data_3BV9 # _model_server_result.job_id r6bOGWC8cDRoacJ14QDm4g _model_server_result.datetime_utc '2024-12-27 01:15:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 3BV9 # _exptl.entry_id 3BV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BV9 _cell.length_a 80.907 _cell.length_b 80.907 _cell.length_c 183.718 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 C C DAR 1 C DAR 401 1_555 C N OIC 2 C OIC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 C C OIC 2 C OIC 402 1_555 C N PRO 3 C PRO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale3 C C PRO 3 C PRO 403 1_555 C N DAL 4 C DAL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? metalc ? metalc1 B O ARG 233 B ARG 221 1_555 G NA NA . B NA 307 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 B O LYS 236 B LYS 224 1_555 G NA NA . B NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 G NA NA . B NA 307 1_555 K O HOH . B HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 G NA NA . B NA 307 1_555 K O HOH . B HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 G NA NA . B NA 307 1_555 K O HOH . B HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 G NA NA . B NA 307 1_555 K O HOH . B HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BV9 _atom_sites.fract_transf_matrix[1][1] 0.01236 _atom_sites.fract_transf_matrix[1][2] 0.007136 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IOD B 1 302 302 IOD IOD . E 4 IOD B 1 303 303 IOD IOD . F 4 IOD B 1 304 304 IOD IOD . G 5 NA B 1 307 307 NA NA . H 6 GOL B 1 305 305 GOL GOL . I 6 GOL B 1 306 306 GOL GOL . J 7 HOH A 1 36 36 HOH HOH . J 7 HOH A 2 38 38 HOH HOH . J 7 HOH A 3 40 40 HOH HOH . J 7 HOH A 4 45 45 HOH HOH . J 7 HOH A 5 48 48 HOH HOH . J 7 HOH A 6 53 53 HOH HOH . J 7 HOH A 7 82 82 HOH HOH . J 7 HOH A 8 92 92 HOH HOH . J 7 HOH A 9 106 106 HOH HOH . J 7 HOH A 10 112 112 HOH HOH . J 7 HOH A 11 116 116 HOH HOH . J 7 HOH A 12 117 117 HOH HOH . J 7 HOH A 13 119 119 HOH HOH . J 7 HOH A 14 125 125 HOH HOH . J 7 HOH A 15 135 135 HOH HOH . J 7 HOH A 16 152 152 HOH HOH . J 7 HOH A 17 156 156 HOH HOH . J 7 HOH A 18 161 161 HOH HOH . J 7 HOH A 19 168 168 HOH HOH . J 7 HOH A 20 180 180 HOH HOH . J 7 HOH A 21 184 184 HOH HOH . J 7 HOH A 22 192 192 HOH HOH . J 7 HOH A 23 201 201 HOH HOH . J 7 HOH A 24 202 202 HOH HOH . J 7 HOH A 25 204 204 HOH HOH . J 7 HOH A 26 205 205 HOH HOH . J 7 HOH A 27 206 206 HOH HOH . J 7 HOH A 28 212 212 HOH HOH . J 7 HOH A 29 252 252 HOH HOH . J 7 HOH A 30 253 253 HOH HOH . J 7 HOH A 31 254 254 HOH HOH . J 7 HOH A 32 256 256 HOH HOH . K 7 HOH B 1 308 1 HOH HOH . K 7 HOH B 2 309 2 HOH HOH . K 7 HOH B 3 310 3 HOH HOH . K 7 HOH B 4 311 4 HOH HOH . K 7 HOH B 5 312 5 HOH HOH . K 7 HOH B 6 313 6 HOH HOH . K 7 HOH B 7 314 7 HOH HOH . K 7 HOH B 8 315 8 HOH HOH . K 7 HOH B 9 316 9 HOH HOH . K 7 HOH B 10 317 10 HOH HOH . K 7 HOH B 11 318 11 HOH HOH . K 7 HOH B 12 319 12 HOH HOH . K 7 HOH B 13 320 13 HOH HOH . K 7 HOH B 14 321 14 HOH HOH . K 7 HOH B 15 322 15 HOH HOH . K 7 HOH B 16 323 16 HOH HOH . K 7 HOH B 17 324 17 HOH HOH . K 7 HOH B 18 325 18 HOH HOH . K 7 HOH B 19 326 19 HOH HOH . K 7 HOH B 20 327 20 HOH HOH . K 7 HOH B 21 328 21 HOH HOH . K 7 HOH B 22 329 22 HOH HOH . K 7 HOH B 23 330 23 HOH HOH . K 7 HOH B 24 331 24 HOH HOH . K 7 HOH B 25 332 25 HOH HOH . K 7 HOH B 26 333 26 HOH HOH . K 7 HOH B 27 334 27 HOH HOH . K 7 HOH B 28 335 28 HOH HOH . K 7 HOH B 29 336 29 HOH HOH . K 7 HOH B 30 337 30 HOH HOH . K 7 HOH B 31 338 31 HOH HOH . K 7 HOH B 32 339 32 HOH HOH . K 7 HOH B 33 340 33 HOH HOH . K 7 HOH B 34 341 34 HOH HOH . K 7 HOH B 35 342 35 HOH HOH . K 7 HOH B 36 343 37 HOH HOH . K 7 HOH B 37 344 39 HOH HOH . K 7 HOH B 38 345 41 HOH HOH . K 7 HOH B 39 346 42 HOH HOH . K 7 HOH B 40 347 43 HOH HOH . K 7 HOH B 41 348 44 HOH HOH . K 7 HOH B 42 349 46 HOH HOH . K 7 HOH B 43 350 47 HOH HOH . K 7 HOH B 44 351 49 HOH HOH . K 7 HOH B 45 352 50 HOH HOH . K 7 HOH B 46 353 51 HOH HOH . K 7 HOH B 47 354 52 HOH HOH . K 7 HOH B 48 355 54 HOH HOH . K 7 HOH B 49 356 55 HOH HOH . K 7 HOH B 50 357 56 HOH HOH . K 7 HOH B 51 358 57 HOH HOH . K 7 HOH B 52 359 58 HOH HOH . K 7 HOH B 53 360 60 HOH HOH . K 7 HOH B 54 361 61 HOH HOH . K 7 HOH B 55 362 62 HOH HOH . K 7 HOH B 56 363 63 HOH HOH . K 7 HOH B 57 364 64 HOH HOH . K 7 HOH B 58 365 65 HOH HOH . K 7 HOH B 59 366 66 HOH HOH . K 7 HOH B 60 367 67 HOH HOH . K 7 HOH B 61 368 68 HOH HOH . K 7 HOH B 62 369 69 HOH HOH . K 7 HOH B 63 370 70 HOH HOH . K 7 HOH B 64 371 71 HOH HOH . K 7 HOH B 65 372 72 HOH HOH . K 7 HOH B 66 373 73 HOH HOH . K 7 HOH B 67 374 74 HOH HOH . K 7 HOH B 68 375 75 HOH HOH . K 7 HOH B 69 376 76 HOH HOH . K 7 HOH B 70 377 78 HOH HOH . K 7 HOH B 71 378 79 HOH HOH . K 7 HOH B 72 379 80 HOH HOH . K 7 HOH B 73 380 81 HOH HOH . K 7 HOH B 74 381 84 HOH HOH . K 7 HOH B 75 382 85 HOH HOH . K 7 HOH B 76 383 86 HOH HOH . K 7 HOH B 77 384 87 HOH HOH . K 7 HOH B 78 385 88 HOH HOH . K 7 HOH B 79 386 89 HOH HOH . K 7 HOH B 80 387 90 HOH HOH . K 7 HOH B 81 388 91 HOH HOH . K 7 HOH B 82 389 93 HOH HOH . K 7 HOH B 83 390 94 HOH HOH . K 7 HOH B 84 391 95 HOH HOH . K 7 HOH B 85 392 96 HOH HOH . K 7 HOH B 86 393 97 HOH HOH . K 7 HOH B 87 394 98 HOH HOH . K 7 HOH B 88 395 99 HOH HOH . K 7 HOH B 89 396 100 HOH HOH . K 7 HOH B 90 397 101 HOH HOH . K 7 HOH B 91 398 102 HOH HOH . K 7 HOH B 92 399 103 HOH HOH . K 7 HOH B 93 400 104 HOH HOH . K 7 HOH B 94 401 105 HOH HOH . K 7 HOH B 95 402 107 HOH HOH . K 7 HOH B 96 403 108 HOH HOH . K 7 HOH B 97 404 109 HOH HOH . K 7 HOH B 98 405 110 HOH HOH . K 7 HOH B 99 406 111 HOH HOH . K 7 HOH B 100 407 113 HOH HOH . K 7 HOH B 101 408 114 HOH HOH . K 7 HOH B 102 409 115 HOH HOH . K 7 HOH B 103 410 118 HOH HOH . K 7 HOH B 104 411 120 HOH HOH . K 7 HOH B 105 412 121 HOH HOH . K 7 HOH B 106 413 122 HOH HOH . K 7 HOH B 107 414 123 HOH HOH . K 7 HOH B 108 415 124 HOH HOH . K 7 HOH B 109 416 126 HOH HOH . K 7 HOH B 110 417 127 HOH HOH . K 7 HOH B 111 418 128 HOH HOH . K 7 HOH B 112 419 129 HOH HOH . K 7 HOH B 113 420 130 HOH HOH . K 7 HOH B 114 421 131 HOH HOH . K 7 HOH B 115 422 132 HOH HOH . K 7 HOH B 116 423 133 HOH HOH . K 7 HOH B 117 424 134 HOH HOH . K 7 HOH B 118 425 136 HOH HOH . K 7 HOH B 119 426 137 HOH HOH . K 7 HOH B 120 427 138 HOH HOH . K 7 HOH B 121 428 139 HOH HOH . K 7 HOH B 122 429 140 HOH HOH . K 7 HOH B 123 430 141 HOH HOH . K 7 HOH B 124 431 142 HOH HOH . K 7 HOH B 125 432 143 HOH HOH . K 7 HOH B 126 433 144 HOH HOH . K 7 HOH B 127 434 145 HOH HOH . K 7 HOH B 128 435 146 HOH HOH . K 7 HOH B 129 436 147 HOH HOH . K 7 HOH B 130 437 148 HOH HOH . K 7 HOH B 131 438 149 HOH HOH . K 7 HOH B 132 439 150 HOH HOH . K 7 HOH B 133 440 151 HOH HOH . K 7 HOH B 134 441 153 HOH HOH . K 7 HOH B 135 442 154 HOH HOH . K 7 HOH B 136 443 155 HOH HOH . K 7 HOH B 137 444 157 HOH HOH . K 7 HOH B 138 445 158 HOH HOH . K 7 HOH B 139 446 159 HOH HOH . K 7 HOH B 140 447 160 HOH HOH . K 7 HOH B 141 448 162 HOH HOH . K 7 HOH B 142 449 163 HOH HOH . K 7 HOH B 143 450 164 HOH HOH . K 7 HOH B 144 451 165 HOH HOH . K 7 HOH B 145 452 166 HOH HOH . K 7 HOH B 146 453 167 HOH HOH . K 7 HOH B 147 454 169 HOH HOH . K 7 HOH B 148 455 170 HOH HOH . K 7 HOH B 149 456 171 HOH HOH . K 7 HOH B 150 457 172 HOH HOH . K 7 HOH B 151 458 173 HOH HOH . K 7 HOH B 152 459 174 HOH HOH . K 7 HOH B 153 460 175 HOH HOH . K 7 HOH B 154 461 176 HOH HOH . K 7 HOH B 155 462 177 HOH HOH . K 7 HOH B 156 463 178 HOH HOH . K 7 HOH B 157 464 179 HOH HOH . K 7 HOH B 158 465 181 HOH HOH . K 7 HOH B 159 466 182 HOH HOH . K 7 HOH B 160 467 183 HOH HOH . K 7 HOH B 161 468 185 HOH HOH . K 7 HOH B 162 469 186 HOH HOH . K 7 HOH B 163 470 187 HOH HOH . K 7 HOH B 164 471 188 HOH HOH . K 7 HOH B 165 472 189 HOH HOH . K 7 HOH B 166 473 190 HOH HOH . K 7 HOH B 167 474 191 HOH HOH . K 7 HOH B 168 475 193 HOH HOH . K 7 HOH B 169 476 194 HOH HOH . K 7 HOH B 170 477 195 HOH HOH . K 7 HOH B 171 478 196 HOH HOH . K 7 HOH B 172 479 197 HOH HOH . K 7 HOH B 173 480 198 HOH HOH . K 7 HOH B 174 481 199 HOH HOH . K 7 HOH B 175 482 200 HOH HOH . K 7 HOH B 176 483 203 HOH HOH . K 7 HOH B 177 484 207 HOH HOH . K 7 HOH B 178 485 208 HOH HOH . K 7 HOH B 179 486 209 HOH HOH . K 7 HOH B 180 487 210 HOH HOH . K 7 HOH B 181 488 211 HOH HOH . K 7 HOH B 182 489 213 HOH HOH . K 7 HOH B 183 490 214 HOH HOH . K 7 HOH B 184 491 215 HOH HOH . K 7 HOH B 185 492 216 HOH HOH . K 7 HOH B 186 493 217 HOH HOH . K 7 HOH B 187 494 218 HOH HOH . K 7 HOH B 188 495 219 HOH HOH . K 7 HOH B 189 496 220 HOH HOH . K 7 HOH B 190 497 221 HOH HOH . K 7 HOH B 191 498 222 HOH HOH . K 7 HOH B 192 499 223 HOH HOH . K 7 HOH B 193 500 224 HOH HOH . K 7 HOH B 194 501 225 HOH HOH . K 7 HOH B 195 502 226 HOH HOH . K 7 HOH B 196 503 227 HOH HOH . K 7 HOH B 197 504 228 HOH HOH . K 7 HOH B 198 505 229 HOH HOH . K 7 HOH B 199 506 230 HOH HOH . K 7 HOH B 200 507 231 HOH HOH . K 7 HOH B 201 508 232 HOH HOH . K 7 HOH B 202 509 233 HOH HOH . K 7 HOH B 203 510 234 HOH HOH . K 7 HOH B 204 511 235 HOH HOH . K 7 HOH B 205 512 236 HOH HOH . K 7 HOH B 206 513 237 HOH HOH . K 7 HOH B 207 514 238 HOH HOH . K 7 HOH B 208 515 239 HOH HOH . K 7 HOH B 209 516 240 HOH HOH . K 7 HOH B 210 517 241 HOH HOH . K 7 HOH B 211 518 242 HOH HOH . K 7 HOH B 212 519 243 HOH HOH . K 7 HOH B 213 520 244 HOH HOH . K 7 HOH B 214 521 245 HOH HOH . K 7 HOH B 215 522 246 HOH HOH . K 7 HOH B 216 523 247 HOH HOH . K 7 HOH B 217 524 248 HOH HOH . K 7 HOH B 218 525 249 HOH HOH . K 7 HOH B 219 526 250 HOH HOH . K 7 HOH B 220 527 251 HOH HOH . K 7 HOH B 221 528 255 HOH HOH . K 7 HOH B 222 529 257 HOH HOH . K 7 HOH B 223 530 258 HOH HOH . K 7 HOH B 224 531 259 HOH HOH . K 7 HOH B 225 532 260 HOH HOH . K 7 HOH B 226 533 261 HOH HOH . K 7 HOH B 227 534 262 HOH HOH . K 7 HOH B 228 535 263 HOH HOH . K 7 HOH B 229 536 264 HOH HOH . K 7 HOH B 230 537 265 HOH HOH . K 7 HOH B 231 538 266 HOH HOH . K 7 HOH B 232 539 267 HOH HOH . K 7 HOH B 233 540 268 HOH HOH . K 7 HOH B 234 541 269 HOH HOH . K 7 HOH B 235 542 270 HOH HOH . K 7 HOH B 236 543 271 HOH HOH . K 7 HOH B 237 544 272 HOH HOH . K 7 HOH B 238 545 273 HOH HOH . L 7 HOH C 1 59 59 HOH HOH . L 7 HOH C 2 77 77 HOH HOH . L 7 HOH C 3 83 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -6.447 _atom_site.Cartn_y 23.856 _atom_site.Cartn_z 12.804 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 28.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #