data_3BVB
#
_model_server_result.job_id            GocdC0SMLiXYGftHFZ0Wxg 
_model_server_result.datetime_utc      '2024-11-18 01:38:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bvb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    3BVB 
#
_exptl.entry_id    3BVB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BVB 
_cell.length_a            58.26 
_cell.length_b            85.91 
_cell.length_c            46.051 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 C NA NA . A NA 501 1_555 G O HOH . A HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc3 C NA NA . A NA 501 1_555 G O HOH . A HOH 1087 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 C NA NA . A NA 501 1_555 G O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc5 C NA NA . A NA 501 1_555 G O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 207 n n 
C1 C2 GOL sing 208 n n 
C1 H11 GOL sing 209 n n 
C1 H12 GOL sing 210 n n 
O1 HO1 GOL sing 211 n n 
C2 O2 GOL sing 212 n n 
C2 C3 GOL sing 213 n n 
C2 H2 GOL sing 214 n n 
O2 HO2 GOL sing 215 n n 
C3 O3 GOL sing 216 n n 
C3 H31 GOL sing 217 n n 
C3 H32 GOL sing 218 n n 
O3 HO3 GOL sing 219 n n 
#
_atom_sites.entry_id                     3BVB 
_atom_sites.fract_transf_matrix[1][1]    0.017164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 501 501 NA NA . 
D 3 CL B 1 502 502 CL CL . 
E 4 017 B 1 401 401 017 DRV . 
F 5 GOL B 1 801 801 GOL GOL . 
G 6 HOH A 1 1001 1001 HOH HOH . 
G 6 HOH A 2 1003 1003 HOH HOH . 
G 6 HOH A 3 1007 1007 HOH HOH . 
G 6 HOH A 4 1008 1008 HOH HOH . 
G 6 HOH A 5 1009 1009 HOH HOH . 
G 6 HOH A 6 1013 1013 HOH HOH . 
G 6 HOH A 7 1015 1015 HOH HOH . 
G 6 HOH A 8 1016 1016 HOH HOH . 
G 6 HOH A 9 1018 1018 HOH HOH . 
G 6 HOH A 10 1021 1021 HOH HOH . 
G 6 HOH A 11 1027 1027 HOH HOH . 
G 6 HOH A 12 1031 1031 HOH HOH . 
G 6 HOH A 13 1033 1033 HOH HOH . 
G 6 HOH A 14 1036 1036 HOH HOH . 
G 6 HOH A 15 1037 1037 HOH HOH . 
G 6 HOH A 16 1038 1038 HOH HOH . 
G 6 HOH A 17 1039 1039 HOH HOH . 
G 6 HOH A 18 1042 1042 HOH HOH . 
G 6 HOH A 19 1043 1043 HOH HOH . 
G 6 HOH A 20 1044 1044 HOH HOH . 
G 6 HOH A 21 1046 1046 HOH HOH . 
G 6 HOH A 22 1049 1049 HOH HOH . 
G 6 HOH A 23 1053 1053 HOH HOH . 
G 6 HOH A 24 1054 1054 HOH HOH . 
G 6 HOH A 25 1055 1055 HOH HOH . 
G 6 HOH A 26 1061 1061 HOH HOH . 
G 6 HOH A 27 1062 1062 HOH HOH . 
G 6 HOH A 28 1063 1063 HOH HOH . 
G 6 HOH A 29 1066 1066 HOH HOH . 
G 6 HOH A 30 1068 1068 HOH HOH . 
G 6 HOH A 31 1069 1069 HOH HOH . 
G 6 HOH A 32 1073 1073 HOH HOH . 
G 6 HOH A 33 1075 1075 HOH HOH . 
G 6 HOH A 34 1083 1083 HOH HOH . 
G 6 HOH A 35 1085 1085 HOH HOH . 
G 6 HOH A 36 1087 1087 HOH HOH . 
G 6 HOH A 37 1088 1088 HOH HOH . 
G 6 HOH A 38 1090 1090 HOH HOH . 
G 6 HOH A 39 1094 1094 HOH HOH . 
G 6 HOH A 40 1095 1095 HOH HOH . 
G 6 HOH A 41 1096 1096 HOH HOH . 
G 6 HOH A 42 1099 1099 HOH HOH . 
G 6 HOH A 43 1100 1100 HOH HOH . 
G 6 HOH A 44 1102 1102 HOH HOH . 
G 6 HOH A 45 1103 1103 HOH HOH . 
G 6 HOH A 46 1104 1104 HOH HOH . 
G 6 HOH A 47 1106 1106 HOH HOH . 
G 6 HOH A 48 1107 1107 HOH HOH . 
G 6 HOH A 49 1108 1108 HOH HOH . 
G 6 HOH A 50 1109 1109 HOH HOH . 
G 6 HOH A 51 1112 1112 HOH HOH . 
G 6 HOH A 52 1114 1114 HOH HOH . 
G 6 HOH A 53 1116 1116 HOH HOH . 
G 6 HOH A 54 1118 1118 HOH HOH . 
G 6 HOH A 55 1125 1125 HOH HOH . 
G 6 HOH A 56 1126 1126 HOH HOH . 
G 6 HOH A 57 1127 1127 HOH HOH . 
G 6 HOH A 58 1128 1128 HOH HOH . 
G 6 HOH A 59 1130 1130 HOH HOH . 
G 6 HOH A 60 1133 1133 HOH HOH . 
G 6 HOH A 61 1136 1136 HOH HOH . 
G 6 HOH A 62 1143 1143 HOH HOH . 
G 6 HOH A 63 1145 1145 HOH HOH . 
G 6 HOH A 64 1147 1147 HOH HOH . 
G 6 HOH A 65 1148 1148 HOH HOH . 
G 6 HOH A 66 1149 1149 HOH HOH . 
G 6 HOH A 67 1150 1150 HOH HOH . 
G 6 HOH A 68 1151 1151 HOH HOH . 
G 6 HOH A 69 1153 1153 HOH HOH . 
G 6 HOH A 70 1154 1154 HOH HOH . 
G 6 HOH A 71 1155 1155 HOH HOH . 
G 6 HOH A 72 1156 1156 HOH HOH . 
G 6 HOH A 73 1160 1160 HOH HOH . 
G 6 HOH A 74 1161 1161 HOH HOH . 
G 6 HOH A 75 1164 1164 HOH HOH . 
G 6 HOH A 76 1165 1165 HOH HOH . 
G 6 HOH A 77 1166 1166 HOH HOH . 
G 6 HOH A 78 1170 1170 HOH HOH . 
G 6 HOH A 79 1172 1172 HOH HOH . 
G 6 HOH A 80 1176 1176 HOH HOH . 
G 6 HOH A 81 1177 1177 HOH HOH . 
G 6 HOH A 82 1178 1178 HOH HOH . 
G 6 HOH A 83 1180 1180 HOH HOH . 
G 6 HOH A 84 1181 1181 HOH HOH . 
G 6 HOH A 85 1182 1182 HOH HOH . 
G 6 HOH A 86 1183 1183 HOH HOH . 
G 6 HOH A 87 1185 1185 HOH HOH . 
G 6 HOH A 88 1186 1186 HOH HOH . 
G 6 HOH A 89 1188 1188 HOH HOH . 
G 6 HOH A 90 1194 1194 HOH HOH . 
G 6 HOH A 91 1195 1195 HOH HOH . 
G 6 HOH A 92 1196 1196 HOH HOH . 
G 6 HOH A 93 1197 1197 HOH HOH . 
G 6 HOH A 94 1202 1202 HOH HOH . 
G 6 HOH A 95 1230 1230 HOH HOH . 
H 6 HOH B 1 1002 1002 HOH HOH . 
H 6 HOH B 2 1004 1004 HOH HOH . 
H 6 HOH B 3 1005 1005 HOH HOH . 
H 6 HOH B 4 1006 1006 HOH HOH . 
H 6 HOH B 5 1010 1010 HOH HOH . 
H 6 HOH B 6 1011 1011 HOH HOH . 
H 6 HOH B 7 1012 1012 HOH HOH . 
H 6 HOH B 8 1014 1014 HOH HOH . 
H 6 HOH B 9 1017 1017 HOH HOH . 
H 6 HOH B 10 1019 1019 HOH HOH . 
H 6 HOH B 11 1020 1020 HOH HOH . 
H 6 HOH B 12 1022 1022 HOH HOH . 
H 6 HOH B 13 1023 1023 HOH HOH . 
H 6 HOH B 14 1024 1024 HOH HOH . 
H 6 HOH B 15 1025 1025 HOH HOH . 
H 6 HOH B 16 1026 1026 HOH HOH . 
H 6 HOH B 17 1028 1028 HOH HOH . 
H 6 HOH B 18 1029 1029 HOH HOH . 
H 6 HOH B 19 1030 1030 HOH HOH . 
H 6 HOH B 20 1032 1032 HOH HOH . 
H 6 HOH B 21 1034 1034 HOH HOH . 
H 6 HOH B 22 1035 1035 HOH HOH . 
H 6 HOH B 23 1040 1040 HOH HOH . 
H 6 HOH B 24 1041 1041 HOH HOH . 
H 6 HOH B 25 1045 1045 HOH HOH . 
H 6 HOH B 26 1047 1047 HOH HOH . 
H 6 HOH B 27 1048 1048 HOH HOH . 
H 6 HOH B 28 1050 1050 HOH HOH . 
H 6 HOH B 29 1051 1051 HOH HOH . 
H 6 HOH B 30 1052 1052 HOH HOH . 
H 6 HOH B 31 1056 1056 HOH HOH . 
H 6 HOH B 32 1057 1057 HOH HOH . 
H 6 HOH B 33 1058 1058 HOH HOH . 
H 6 HOH B 34 1059 1059 HOH HOH . 
H 6 HOH B 35 1060 1060 HOH HOH . 
H 6 HOH B 36 1064 1064 HOH HOH . 
H 6 HOH B 37 1065 1065 HOH HOH . 
H 6 HOH B 38 1067 1067 HOH HOH . 
H 6 HOH B 39 1070 1070 HOH HOH . 
H 6 HOH B 40 1071 1071 HOH HOH . 
H 6 HOH B 41 1072 1072 HOH HOH . 
H 6 HOH B 42 1074 1074 HOH HOH . 
H 6 HOH B 43 1076 1076 HOH HOH . 
H 6 HOH B 44 1077 1077 HOH HOH . 
H 6 HOH B 45 1078 1078 HOH HOH . 
H 6 HOH B 46 1079 1079 HOH HOH . 
H 6 HOH B 47 1080 1080 HOH HOH . 
H 6 HOH B 48 1081 1081 HOH HOH . 
H 6 HOH B 49 1082 1082 HOH HOH . 
H 6 HOH B 50 1084 1084 HOH HOH . 
H 6 HOH B 51 1086 1086 HOH HOH . 
H 6 HOH B 52 1089 1089 HOH HOH . 
H 6 HOH B 53 1091 1091 HOH HOH . 
H 6 HOH B 54 1092 1092 HOH HOH . 
H 6 HOH B 55 1093 1093 HOH HOH . 
H 6 HOH B 56 1097 1097 HOH HOH . 
H 6 HOH B 57 1098 1098 HOH HOH . 
H 6 HOH B 58 1101 1101 HOH HOH . 
H 6 HOH B 59 1105 1105 HOH HOH . 
H 6 HOH B 60 1110 1110 HOH HOH . 
H 6 HOH B 61 1111 1111 HOH HOH . 
H 6 HOH B 62 1113 1113 HOH HOH . 
H 6 HOH B 63 1115 1115 HOH HOH . 
H 6 HOH B 64 1117 1117 HOH HOH . 
H 6 HOH B 65 1119 1119 HOH HOH . 
H 6 HOH B 66 1120 1120 HOH HOH . 
H 6 HOH B 67 1121 1121 HOH HOH . 
H 6 HOH B 68 1122 1122 HOH HOH . 
H 6 HOH B 69 1123 1123 HOH HOH . 
H 6 HOH B 70 1124 1124 HOH HOH . 
H 6 HOH B 71 1129 1129 HOH HOH . 
H 6 HOH B 72 1131 1131 HOH HOH . 
H 6 HOH B 73 1132 1132 HOH HOH . 
H 6 HOH B 74 1134 1134 HOH HOH . 
H 6 HOH B 75 1137 1137 HOH HOH . 
H 6 HOH B 76 1138 1138 HOH HOH . 
H 6 HOH B 77 1139 1139 HOH HOH . 
H 6 HOH B 78 1140 1140 HOH HOH . 
H 6 HOH B 79 1141 1141 HOH HOH . 
H 6 HOH B 80 1142 1142 HOH HOH . 
H 6 HOH B 81 1144 1144 HOH HOH . 
H 6 HOH B 82 1146 1146 HOH HOH . 
H 6 HOH B 83 1152 1152 HOH HOH . 
H 6 HOH B 84 1157 1157 HOH HOH . 
H 6 HOH B 85 1158 1158 HOH HOH . 
H 6 HOH B 86 1159 1159 HOH HOH . 
H 6 HOH B 87 1162 1162 HOH HOH . 
H 6 HOH B 88 1163 1163 HOH HOH . 
H 6 HOH B 89 1167 1167 HOH HOH . 
H 6 HOH B 90 1168 1168 HOH HOH . 
H 6 HOH B 91 1169 1169 HOH HOH . 
H 6 HOH B 92 1171 1171 HOH HOH . 
H 6 HOH B 93 1173 1173 HOH HOH . 
H 6 HOH B 94 1174 1174 HOH HOH . 
H 6 HOH B 95 1175 1175 HOH HOH . 
H 6 HOH B 96 1179 1179 HOH HOH . 
H 6 HOH B 97 1184 1184 HOH HOH . 
H 6 HOH B 98 1187 1187 HOH HOH . 
H 6 HOH B 99 1189 1189 HOH HOH . 
H 6 HOH B 100 1193 1193 HOH HOH . 
H 6 HOH B 101 1199 1199 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 9.503 82.275 26.979 0.5 45.41 ? C1 GOL 801 B 1 
HETATM 2 O O1 GOL . . . F 5 8.448 82.532 27.843 0.5 47.71 ? O1 GOL 801 B 1 
HETATM 3 C C2 GOL . . . F 5 9.365 81.039 26.087 0.5 48.35 ? C2 GOL 801 B 1 
HETATM 4 O O2 GOL . . . F 5 9.278 79.854 26.86 0.5 44.35 ? O2 GOL 801 B 1 
HETATM 5 C C3 GOL . . . F 5 10.554 80.956 25.08 0.5 43.52 ? C3 GOL 801 B 1 
HETATM 6 O O3 GOL . . . F 5 10.665 79.639 24.626 0.5 46.76 ? O3 GOL 801 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#