data_3BWJ # _model_server_result.job_id FbmP-zxx-gg1EImTvHOC-g _model_server_result.datetime_utc '2024-10-12 14:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":352}' # _entry.id 3BWJ # _exptl.entry_id 3BWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 705.769 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-N-(6-{[(1R)-4-carbamimidamido-1-{[(1R)-4-carbamimidamido-1-carbamoylbutyl]carbamoyl}butyl]amino}-6-oxohexyl)-3,4-dihydroxytetrahydrofuran-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BWJ _cell.length_a 71.188 _cell.length_b 72.632 _cell.length_c 77.221 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 138 A PHE 138 1_555 A N SEP 139 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 139 A SEP 139 1_555 A N GLU 140 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C28 H47 N15 O7' _chem_comp.formula_weight 705.769 _chem_comp.id ARX _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-N-(6-{[(1R)-4-carbamimidamido-1-{[(1R)-4-carbamimidamido-1-carbamoylbutyl]carbamoyl}butyl]amino}-6-oxohexyl)-3,4-dihydroxytetrahydrofuran-2-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ARC-1034 # _atom_sites.entry_id 3BWJ _atom_sites.fract_transf_matrix[1][1] 0.014047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARX A 1 351 1 ARX ARX . C 2 ARX A 1 352 2 ARX ARX . D 3 HOH A 1 401 401 HOH HOH . D 3 HOH A 2 402 402 HOH HOH . D 3 HOH A 3 403 403 HOH HOH . D 3 HOH A 4 404 404 HOH HOH . D 3 HOH A 5 405 405 HOH HOH . D 3 HOH A 6 406 406 HOH HOH . D 3 HOH A 7 407 407 HOH HOH . D 3 HOH A 8 408 408 HOH HOH . D 3 HOH A 9 409 409 HOH HOH . D 3 HOH A 10 411 411 HOH HOH . D 3 HOH A 11 412 412 HOH HOH . D 3 HOH A 12 413 413 HOH HOH . D 3 HOH A 13 415 415 HOH HOH . D 3 HOH A 14 416 416 HOH HOH . D 3 HOH A 15 417 417 HOH HOH . D 3 HOH A 16 418 418 HOH HOH . D 3 HOH A 17 419 419 HOH HOH . D 3 HOH A 18 420 420 HOH HOH . D 3 HOH A 19 421 421 HOH HOH . D 3 HOH A 20 422 422 HOH HOH . D 3 HOH A 21 423 423 HOH HOH . D 3 HOH A 22 424 424 HOH HOH . D 3 HOH A 23 425 425 HOH HOH . D 3 HOH A 24 426 426 HOH HOH . D 3 HOH A 25 427 427 HOH HOH . D 3 HOH A 26 428 428 HOH HOH . D 3 HOH A 27 429 429 HOH HOH . D 3 HOH A 28 430 430 HOH HOH . D 3 HOH A 29 431 431 HOH HOH . D 3 HOH A 30 432 432 HOH HOH . D 3 HOH A 31 433 433 HOH HOH . D 3 HOH A 32 434 434 HOH HOH . D 3 HOH A 33 435 435 HOH HOH . D 3 HOH A 34 436 436 HOH HOH . D 3 HOH A 35 437 437 HOH HOH . D 3 HOH A 36 438 438 HOH HOH . D 3 HOH A 37 440 440 HOH HOH . D 3 HOH A 38 441 441 HOH HOH . D 3 HOH A 39 442 442 HOH HOH . D 3 HOH A 40 443 443 HOH HOH . D 3 HOH A 41 444 444 HOH HOH . D 3 HOH A 42 446 446 HOH HOH . D 3 HOH A 43 447 447 HOH HOH . D 3 HOH A 44 448 448 HOH HOH . D 3 HOH A 45 449 449 HOH HOH . D 3 HOH A 46 450 450 HOH HOH . D 3 HOH A 47 451 451 HOH HOH . D 3 HOH A 48 452 452 HOH HOH . D 3 HOH A 49 453 453 HOH HOH . D 3 HOH A 50 454 454 HOH HOH . D 3 HOH A 51 455 455 HOH HOH . D 3 HOH A 52 456 456 HOH HOH . D 3 HOH A 53 457 457 HOH HOH . D 3 HOH A 54 458 458 HOH HOH . D 3 HOH A 55 459 459 HOH HOH . D 3 HOH A 56 460 460 HOH HOH . D 3 HOH A 57 461 461 HOH HOH . D 3 HOH A 58 462 462 HOH HOH . D 3 HOH A 59 463 463 HOH HOH . D 3 HOH A 60 464 464 HOH HOH . D 3 HOH A 61 465 465 HOH HOH . D 3 HOH A 62 466 466 HOH HOH . D 3 HOH A 63 467 467 HOH HOH . D 3 HOH A 64 468 468 HOH HOH . D 3 HOH A 65 469 469 HOH HOH . D 3 HOH A 66 470 470 HOH HOH . D 3 HOH A 67 471 471 HOH HOH . D 3 HOH A 68 472 472 HOH HOH . D 3 HOH A 69 473 473 HOH HOH . D 3 HOH A 70 476 476 HOH HOH . D 3 HOH A 71 481 481 HOH HOH . D 3 HOH A 72 482 482 HOH HOH . D 3 HOH A 73 483 483 HOH HOH . D 3 HOH A 74 484 484 HOH HOH . D 3 HOH A 75 485 485 HOH HOH . D 3 HOH A 76 486 486 HOH HOH . D 3 HOH A 77 487 487 HOH HOH . D 3 HOH A 78 488 488 HOH HOH . D 3 HOH A 79 489 489 HOH HOH . D 3 HOH A 80 490 490 HOH HOH . D 3 HOH A 81 491 491 HOH HOH . D 3 HOH A 82 492 492 HOH HOH . D 3 HOH A 83 493 493 HOH HOH . D 3 HOH A 84 495 495 HOH HOH . D 3 HOH A 85 497 497 HOH HOH . D 3 HOH A 86 498 498 HOH HOH . D 3 HOH A 87 499 499 HOH HOH . D 3 HOH A 88 500 500 HOH HOH . D 3 HOH A 89 502 502 HOH HOH . D 3 HOH A 90 503 503 HOH HOH . D 3 HOH A 91 504 504 HOH HOH . D 3 HOH A 92 505 505 HOH HOH . D 3 HOH A 93 506 506 HOH HOH . D 3 HOH A 94 509 509 HOH HOH . D 3 HOH A 95 510 510 HOH HOH . D 3 HOH A 96 511 511 HOH HOH . D 3 HOH A 97 512 512 HOH HOH . D 3 HOH A 98 513 513 HOH HOH . D 3 HOH A 99 515 515 HOH HOH . D 3 HOH A 100 516 516 HOH HOH . D 3 HOH A 101 517 517 HOH HOH . D 3 HOH A 102 518 518 HOH HOH . D 3 HOH A 103 519 519 HOH HOH . D 3 HOH A 104 520 520 HOH HOH . D 3 HOH A 105 524 524 HOH HOH . D 3 HOH A 106 527 527 HOH HOH . D 3 HOH A 107 528 528 HOH HOH . D 3 HOH A 108 529 529 HOH HOH . D 3 HOH A 109 530 530 HOH HOH . D 3 HOH A 110 531 531 HOH HOH . D 3 HOH A 111 533 533 HOH HOH . D 3 HOH A 112 534 534 HOH HOH . D 3 HOH A 113 535 535 HOH HOH . D 3 HOH A 114 536 536 HOH HOH . D 3 HOH A 115 537 537 HOH HOH . D 3 HOH A 116 538 538 HOH HOH . D 3 HOH A 117 539 539 HOH HOH . D 3 HOH A 118 540 540 HOH HOH . D 3 HOH A 119 541 541 HOH HOH . D 3 HOH A 120 542 542 HOH HOH . D 3 HOH A 121 543 543 HOH HOH . D 3 HOH A 122 544 544 HOH HOH . D 3 HOH A 123 545 545 HOH HOH . D 3 HOH A 124 546 546 HOH HOH . D 3 HOH A 125 547 547 HOH HOH . D 3 HOH A 126 548 548 HOH HOH . D 3 HOH A 127 549 549 HOH HOH . D 3 HOH A 128 550 550 HOH HOH . D 3 HOH A 129 551 551 HOH HOH . D 3 HOH A 130 552 552 HOH HOH . D 3 HOH A 131 553 553 HOH HOH . D 3 HOH A 132 554 554 HOH HOH . D 3 HOH A 133 556 556 HOH HOH . D 3 HOH A 134 557 557 HOH HOH . D 3 HOH A 135 558 558 HOH HOH . D 3 HOH A 136 559 559 HOH HOH . D 3 HOH A 137 560 560 HOH HOH . D 3 HOH A 138 561 561 HOH HOH . D 3 HOH A 139 562 562 HOH HOH . D 3 HOH A 140 563 563 HOH HOH . D 3 HOH A 141 564 564 HOH HOH . D 3 HOH A 142 565 565 HOH HOH . D 3 HOH A 143 566 566 HOH HOH . D 3 HOH A 144 567 567 HOH HOH . D 3 HOH A 145 568 568 HOH HOH . D 3 HOH A 146 569 569 HOH HOH . D 3 HOH A 147 570 570 HOH HOH . D 3 HOH A 148 571 571 HOH HOH . D 3 HOH A 149 572 572 HOH HOH . D 3 HOH A 150 573 573 HOH HOH . D 3 HOH A 151 574 574 HOH HOH . D 3 HOH A 152 575 575 HOH HOH . D 3 HOH A 153 576 576 HOH HOH . D 3 HOH A 154 577 577 HOH HOH . D 3 HOH A 155 578 578 HOH HOH . D 3 HOH A 156 579 579 HOH HOH . D 3 HOH A 157 580 580 HOH HOH . D 3 HOH A 158 581 581 HOH HOH . D 3 HOH A 159 582 582 HOH HOH . D 3 HOH A 160 583 583 HOH HOH . D 3 HOH A 161 584 584 HOH HOH . D 3 HOH A 162 585 585 HOH HOH . D 3 HOH A 163 586 586 HOH HOH . D 3 HOH A 164 587 587 HOH HOH . D 3 HOH A 165 588 588 HOH HOH . D 3 HOH A 166 589 589 HOH HOH . D 3 HOH A 167 590 590 HOH HOH . D 3 HOH A 168 591 591 HOH HOH . D 3 HOH A 169 592 592 HOH HOH . D 3 HOH A 170 593 593 HOH HOH . D 3 HOH A 171 594 594 HOH HOH . D 3 HOH A 172 595 595 HOH HOH . D 3 HOH A 173 596 596 HOH HOH . D 3 HOH A 174 597 597 HOH HOH . D 3 HOH A 175 598 598 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ARX . . . C 2 37.235 34.933 24.178 1 41.37 ? N1 ARX 352 A 1 HETATM 2 C C2 ARX . . . C 2 38.243 35.837 24.028 1 43.9 ? C2 ARX 352 A 1 HETATM 3 N N3 ARX . . . C 2 39.129 36.224 24.983 1 41.6 ? N3 ARX 352 A 1 HETATM 4 C C4 ARX . . . C 2 39.022 35.67 26.208 1 42.01 ? C4 ARX 352 A 1 HETATM 5 C C5 ARX . . . C 2 37.945 34.672 26.484 1 41.87 ? C5 ARX 352 A 1 HETATM 6 C C6 ARX . . . C 2 37.037 34.314 25.368 1 42.66 ? C6 ARX 352 A 1 HETATM 7 N N6 ARX . . . C 2 36.047 33.391 25.56 1 44.36 ? N6 ARX 352 A 1 HETATM 8 N N7 ARX . . . C 2 38.052 34.304 27.766 1 40.08 ? N7 ARX 352 A 1 HETATM 9 C C8 ARX . . . C 2 39.108 34.998 28.259 1 42.33 ? C8 ARX 352 A 1 HETATM 10 N N9 ARX . . . C 2 39.68 35.828 27.341 1 43.04 ? N9 ARX 352 A 1 HETATM 11 O O5' ARX . . . C 2 42.492 35.853 31.663 1 48.29 ? O5' ARX 352 A 1 HETATM 12 O O3' ARX . . . C 2 42.829 38.836 29.214 1 43.57 ? O3' ARX 352 A 1 HETATM 13 O O2' ARX . . . C 2 40.789 39.191 27.59 1 40.9 ? O2' ARX 352 A 1 HETATM 14 O O4' ARX . . . C 2 41.898 35.915 28.147 1 43.24 ? O4' ARX 352 A 1 HETATM 15 C C5' ARX . . . C 2 41.837 35.702 30.64 1 45.85 ? C5' ARX 352 A 1 HETATM 16 C C3' ARX . . . C 2 41.745 37.917 29.457 1 43.28 ? C3' ARX 352 A 1 HETATM 17 C C2' ARX . . . C 2 40.681 37.982 28.378 1 42.11 ? C2' ARX 352 A 1 HETATM 18 C C4' ARX . . . C 2 42.282 36.484 29.418 1 45.13 ? C4' ARX 352 A 1 HETATM 19 C C1' ARX . . . C 2 40.881 36.719 27.52 1 43.33 ? C1' ARX 352 A 1 HETATM 20 C C26 ARX . . . C 2 35.282 37.865 32.203 1 25.17 ? C26 ARX 352 A 1 HETATM 21 O O28 ARX . . . C 2 34.561 37.581 33.146 1 28.27 ? O28 ARX 352 A 1 HETATM 22 C C25 ARX . . . C 2 36.767 38.127 32.444 1 27.98 ? C25 ARX 352 A 1 HETATM 23 C C24 ARX . . . C 2 37.583 37.055 31.716 1 31.77 ? C24 ARX 352 A 1 HETATM 24 C C23 ARX . . . C 2 38.108 35.946 32.611 1 36.18 ? C23 ARX 352 A 1 HETATM 25 C C22 ARX . . . C 2 38.547 34.747 31.745 1 41.67 ? C22 ARX 352 A 1 HETATM 26 C C21 ARX . . . C 2 40.044 34.411 31.763 1 42.4 ? C21 ARX 352 A 1 HETATM 27 N N20 ARX . . . C 2 40.764 34.88 30.576 1 45.34 ? N20 ARX 352 A 1 HETATM 28 N N27 ARX . . . C 2 34.783 37.917 30.977 1 21.1 ? N27 ARX 352 A 1 HETATM 29 C C29 ARX . . . C 2 33.432 37.409 30.699 1 19.32 ? C29 ARX 352 A 1 HETATM 30 C C37 ARX . . . C 2 33.216 37.114 29.224 1 15.21 ? C37 ARX 352 A 1 HETATM 31 C C38 ARX . . . C 2 34.179 36.013 28.8 1 10.79 ? C38 ARX 352 A 1 HETATM 32 C C39 ARX . . . C 2 34.225 35.923 27.305 1 8.92 ? C39 ARX 352 A 1 HETATM 33 N N40 ARX . . . C 2 34.92 37.061 26.761 1 13.07 ? N40 ARX 352 A 1 HETATM 34 C C41 ARX . . . C 2 34.705 37.508 25.522 1 15.34 ? C41 ARX 352 A 1 HETATM 35 N N43 ARX . . . C 2 35.419 38.542 25.075 1 16.12 ? N43 ARX 352 A 1 HETATM 36 N N42 ARX . . . C 2 33.864 36.946 24.759 1 14.56 ? N42 ARX 352 A 1 HETATM 37 C C30 ARX . . . C 2 32.349 38.337 31.186 1 20.64 ? C30 ARX 352 A 1 HETATM 38 O O35 ARX . . . C 2 31.422 37.911 31.866 1 23.73 ? O35 ARX 352 A 1 HETATM 39 N N31 ARX . . . C 2 32.489 39.617 30.865 1 19.65 ? N31 ARX 352 A 1 HETATM 40 C C32 ARX . . . C 2 31.625 40.729 31.256 1 18.88 ? C32 ARX 352 A 1 HETATM 41 C C78 ARX . . . C 2 30.57 40.951 30.171 1 17.97 ? C78 ARX 352 A 1 HETATM 42 C C79 ARX . . . C 2 29.426 39.995 30.46 1 20.72 ? C79 ARX 352 A 1 HETATM 43 C C85 ARX . . . C 2 28.148 40.504 29.827 1 19.74 ? C85 ARX 352 A 1 HETATM 44 N N77 ARX . . . C 2 27.185 39.504 29.42 1 18.55 ? N77 ARX 352 A 1 HETATM 45 C C86 ARX . . . C 2 26.084 39.267 30.156 1 20.71 ? C86 ARX 352 A 1 HETATM 46 N N93 ARX . . . C 2 25.149 38.483 29.752 1 18.34 ? N93 ARX 352 A 1 HETATM 47 N N94 ARX . . . C 2 25.976 39.872 31.341 1 19.32 ? N94 ARX 352 A 1 HETATM 48 C C75 ARX . . . C 2 32.455 41.986 31.399 1 18.75 ? C75 ARX 352 A 1 HETATM 49 O O77 ARX . . . C 2 33.548 42.035 30.833 1 16.53 ? O77 ARX 352 A 1 HETATM 50 N N76 ARX . . . C 2 31.98 43.02 32.112 1 15.33 ? N76 ARX 352 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #