data_3BWM
#
_model_server_result.job_id            HCBB3DXYgga0H7vga9uFSg 
_model_server_result.datetime_utc      '2024-11-04 22:44:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bwm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3BWM 
#
_exptl.entry_id    3BWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BWM 
_cell.length_a            43.284 
_cell.length_b            66.648 
_cell.length_c            68.046 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 140 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc2 A OD2 ASP 168 A ASP 169 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc3 A OD1 ASN 169 A ASN 170 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc4 A O ARG 183 A ARG 184 1_555 C K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc5 A O SER 185 A SER 186 1_555 C K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc6 A O PHE 188 A PHE 189 1_555 C K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc7 B MG MG . A MG 300 1_555 E O1 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc8 B MG MG . A MG 300 1_555 E O2 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc9 B MG MG . A MG 300 1_555 F O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc10 C K K . A K 303 1_555 F O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc11 C K K . A K 303 1_555 F O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 295 n n 
N HN1 SAM sing 296 n n 
N HN2 SAM sing 297 n n 
CA C SAM sing 298 n n 
CA CB SAM sing 299 n n 
CA HA SAM sing 300 n n 
C O SAM doub 301 n n 
C OXT SAM sing 302 n n 
CB CG SAM sing 303 n n 
CB HB1 SAM sing 304 n n 
CB HB2 SAM sing 305 n n 
CG SD SAM sing 306 n n 
CG HG1 SAM sing 307 n n 
CG HG2 SAM sing 308 n n 
SD CE SAM sing 309 n n 
SD C5' SAM sing 310 n n 
CE HE1 SAM sing 311 n n 
CE HE2 SAM sing 312 n n 
CE HE3 SAM sing 313 n n 
C5' C4' SAM sing 314 n n 
C5' "H5'1" SAM sing 315 n n 
C5' "H5'2" SAM sing 316 n n 
C4' O4' SAM sing 317 n n 
C4' C3' SAM sing 318 n n 
C4' H4' SAM sing 319 n n 
O4' C1' SAM sing 320 n n 
C3' O3' SAM sing 321 n n 
C3' C2' SAM sing 322 n n 
C3' H3' SAM sing 323 n n 
O3' HO3' SAM sing 324 n n 
C2' O2' SAM sing 325 n n 
C2' C1' SAM sing 326 n n 
C2' H2' SAM sing 327 n n 
O2' HO2' SAM sing 328 n n 
C1' N9 SAM sing 329 n n 
C1' H1' SAM sing 330 n n 
N9 C8 SAM sing 331 n y 
N9 C4 SAM sing 332 n y 
C8 N7 SAM doub 333 n y 
C8 H8 SAM sing 334 n n 
N7 C5 SAM sing 335 n y 
C5 C6 SAM sing 336 n y 
C5 C4 SAM doub 337 n y 
C6 N6 SAM sing 338 n n 
C6 N1 SAM doub 339 n y 
N6 HN61 SAM sing 340 n n 
N6 HN62 SAM sing 341 n n 
N1 C2 SAM sing 342 n y 
C2 N3 SAM doub 343 n y 
C2 H2 SAM sing 344 n n 
N3 C4 SAM sing 345 n y 
#
_atom_sites.entry_id                     3BWM 
_atom_sites.fract_transf_matrix[1][1]    0.023103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015004 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 300 300 MG MG . 
C 3 K A 1 303 303 K K . 
D 4 SAM A 1 301 301 SAM SAM . 
E 5 DNC A 1 302 302 DNC DNC . 
F 6 HOH A 1 401 401 HOH HOH . 
F 6 HOH A 2 402 402 HOH HOH . 
F 6 HOH A 3 403 403 HOH HOH . 
F 6 HOH A 4 404 404 HOH HOH . 
F 6 HOH A 5 405 405 HOH HOH . 
F 6 HOH A 6 406 406 HOH HOH . 
F 6 HOH A 7 407 407 HOH HOH . 
F 6 HOH A 8 408 408 HOH HOH . 
F 6 HOH A 9 409 409 HOH HOH . 
F 6 HOH A 10 410 410 HOH HOH . 
F 6 HOH A 11 411 411 HOH HOH . 
F 6 HOH A 12 412 412 HOH HOH . 
F 6 HOH A 13 413 413 HOH HOH . 
F 6 HOH A 14 414 414 HOH HOH . 
F 6 HOH A 15 415 415 HOH HOH . 
F 6 HOH A 16 416 416 HOH HOH . 
F 6 HOH A 17 417 417 HOH HOH . 
F 6 HOH A 18 418 418 HOH HOH . 
F 6 HOH A 19 419 419 HOH HOH . 
F 6 HOH A 20 420 420 HOH HOH . 
F 6 HOH A 21 421 421 HOH HOH . 
F 6 HOH A 22 422 422 HOH HOH . 
F 6 HOH A 23 423 423 HOH HOH . 
F 6 HOH A 24 424 424 HOH HOH . 
F 6 HOH A 25 425 425 HOH HOH . 
F 6 HOH A 26 426 426 HOH HOH . 
F 6 HOH A 27 427 427 HOH HOH . 
F 6 HOH A 28 428 428 HOH HOH . 
F 6 HOH A 29 429 429 HOH HOH . 
F 6 HOH A 30 430 430 HOH HOH . 
F 6 HOH A 31 431 431 HOH HOH . 
F 6 HOH A 32 432 432 HOH HOH . 
F 6 HOH A 33 433 433 HOH HOH . 
F 6 HOH A 34 434 434 HOH HOH . 
F 6 HOH A 35 435 435 HOH HOH . 
F 6 HOH A 36 436 436 HOH HOH . 
F 6 HOH A 37 437 437 HOH HOH . 
F 6 HOH A 38 438 438 HOH HOH . 
F 6 HOH A 39 439 439 HOH HOH . 
F 6 HOH A 40 440 440 HOH HOH . 
F 6 HOH A 41 441 441 HOH HOH . 
F 6 HOH A 42 442 442 HOH HOH . 
F 6 HOH A 43 443 443 HOH HOH . 
F 6 HOH A 44 444 444 HOH HOH . 
F 6 HOH A 45 445 445 HOH HOH . 
F 6 HOH A 46 446 446 HOH HOH . 
F 6 HOH A 47 447 447 HOH HOH . 
F 6 HOH A 48 448 448 HOH HOH . 
F 6 HOH A 49 449 449 HOH HOH . 
F 6 HOH A 50 450 450 HOH HOH . 
F 6 HOH A 51 451 451 HOH HOH . 
F 6 HOH A 52 452 452 HOH HOH . 
F 6 HOH A 53 453 453 HOH HOH . 
F 6 HOH A 54 454 454 HOH HOH . 
F 6 HOH A 55 455 455 HOH HOH . 
F 6 HOH A 56 456 456 HOH HOH . 
F 6 HOH A 57 457 457 HOH HOH . 
F 6 HOH A 58 458 458 HOH HOH . 
F 6 HOH A 59 459 459 HOH HOH . 
F 6 HOH A 60 460 460 HOH HOH . 
F 6 HOH A 61 461 461 HOH HOH . 
F 6 HOH A 62 462 462 HOH HOH . 
F 6 HOH A 63 463 463 HOH HOH . 
F 6 HOH A 64 464 464 HOH HOH . 
F 6 HOH A 65 465 465 HOH HOH . 
F 6 HOH A 66 466 466 HOH HOH . 
F 6 HOH A 67 467 467 HOH HOH . 
F 6 HOH A 68 468 468 HOH HOH . 
F 6 HOH A 69 469 469 HOH HOH . 
F 6 HOH A 70 470 470 HOH HOH . 
F 6 HOH A 71 471 471 HOH HOH . 
F 6 HOH A 72 472 472 HOH HOH . 
F 6 HOH A 73 473 473 HOH HOH . 
F 6 HOH A 74 474 474 HOH HOH . 
F 6 HOH A 75 475 475 HOH HOH . 
F 6 HOH A 76 476 476 HOH HOH . 
F 6 HOH A 77 477 477 HOH HOH . 
F 6 HOH A 78 478 478 HOH HOH . 
F 6 HOH A 79 479 479 HOH HOH . 
F 6 HOH A 80 480 480 HOH HOH . 
F 6 HOH A 81 481 481 HOH HOH . 
F 6 HOH A 82 482 482 HOH HOH . 
F 6 HOH A 83 483 483 HOH HOH . 
F 6 HOH A 84 484 484 HOH HOH . 
F 6 HOH A 85 485 485 HOH HOH . 
F 6 HOH A 86 486 486 HOH HOH . 
F 6 HOH A 87 487 487 HOH HOH . 
F 6 HOH A 88 488 488 HOH HOH . 
F 6 HOH A 89 489 489 HOH HOH . 
F 6 HOH A 90 490 490 HOH HOH . 
F 6 HOH A 91 491 491 HOH HOH . 
F 6 HOH A 92 492 492 HOH HOH . 
F 6 HOH A 93 493 493 HOH HOH . 
F 6 HOH A 94 494 494 HOH HOH . 
F 6 HOH A 95 495 495 HOH HOH . 
F 6 HOH A 96 496 496 HOH HOH . 
F 6 HOH A 97 497 497 HOH HOH . 
F 6 HOH A 98 498 498 HOH HOH . 
F 6 HOH A 99 499 499 HOH HOH . 
F 6 HOH A 100 500 500 HOH HOH . 
F 6 HOH A 101 501 501 HOH HOH . 
F 6 HOH A 102 502 502 HOH HOH . 
F 6 HOH A 103 503 503 HOH HOH . 
F 6 HOH A 104 504 504 HOH HOH . 
F 6 HOH A 105 505 505 HOH HOH . 
F 6 HOH A 106 506 506 HOH HOH . 
F 6 HOH A 107 507 507 HOH HOH . 
F 6 HOH A 108 508 508 HOH HOH . 
F 6 HOH A 109 509 509 HOH HOH . 
F 6 HOH A 110 510 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 4 -9.436 -7.062 -12.623 1 30.55 ? N SAM 301 A 1 
HETATM 2 C CA SAM . . . D 4 -10.413 -7.764 -13.503 1 30.85 ? CA SAM 301 A 1 
HETATM 3 C C SAM . . . D 4 -10.999 -9 -12.829 1 30.92 ? C SAM 301 A 1 
HETATM 4 O O SAM . . . D 4 -10.325 -9.744 -12.109 1 30.97 ? O SAM 301 A 1 
HETATM 5 O OXT SAM . . . D 4 -12.176 -9.3 -13.006 1 31.27 ? OXT SAM 301 A 1 
HETATM 6 C CB SAM . . . D 4 -9.747 -8.222 -14.8 1 31.01 ? CB SAM 301 A 1 
HETATM 7 C CG SAM . . . D 4 -8.997 -7.141 -15.564 1 31.29 ? CG SAM 301 A 1 
HETATM 8 S SD SAM . . . D 4 -8.416 -7.793 -17.147 1 32.3 ? SD SAM 301 A 1 
HETATM 9 C CE SAM . . . D 4 -7.044 -8.84 -16.583 1 28.78 ? CE SAM 301 A 1 
HETATM 10 C C5' SAM . . . D 4 -7.344 -6.494 -17.854 1 31.51 ? C5' SAM 301 A 1 
HETATM 11 C C4' SAM . . . D 4 -8.113 -5.22 -18.168 1 30.26 ? C4' SAM 301 A 1 
HETATM 12 O O4' SAM . . . D 4 -7.308 -4.061 -18.074 1 29.55 ? O4' SAM 301 A 1 
HETATM 13 C C3' SAM . . . D 4 -8.715 -5.258 -19.571 1 29.16 ? C3' SAM 301 A 1 
HETATM 14 O O3' SAM . . . D 4 -10.114 -5.088 -19.415 1 29.13 ? O3' SAM 301 A 1 
HETATM 15 C C2' SAM . . . D 4 -8.002 -4.128 -20.312 1 28.1 ? C2' SAM 301 A 1 
HETATM 16 O O2' SAM . . . D 4 -8.822 -3.498 -21.252 1 25.15 ? O2' SAM 301 A 1 
HETATM 17 C C1' SAM . . . D 4 -7.619 -3.196 -19.162 1 28.9 ? C1' SAM 301 A 1 
HETATM 18 N N9 SAM . . . D 4 -6.477 -2.29 -19.395 1 28.08 ? N9 SAM 301 A 1 
HETATM 19 C C8 SAM . . . D 4 -5.302 -2.543 -20.047 1 28.02 ? C8 SAM 301 A 1 
HETATM 20 N N7 SAM . . . D 4 -4.531 -1.437 -19.974 1 27.55 ? N7 SAM 301 A 1 
HETATM 21 C C5 SAM . . . D 4 -5.202 -0.487 -19.289 1 26.31 ? C5 SAM 301 A 1 
HETATM 22 C C6 SAM . . . D 4 -4.898 0.815 -18.92 1 26.22 ? C6 SAM 301 A 1 
HETATM 23 N N6 SAM . . . D 4 -3.738 1.365 -19.259 1 27 ? N6 SAM 301 A 1 
HETATM 24 N N1 SAM . . . D 4 -5.808 1.534 -18.182 1 24.76 ? N1 SAM 301 A 1 
HETATM 25 C C2 SAM . . . D 4 -7.031 0.987 -17.825 1 25.61 ? C2 SAM 301 A 1 
HETATM 26 N N3 SAM . . . D 4 -7.317 -0.302 -18.197 1 23.95 ? N3 SAM 301 A 1 
HETATM 27 C C4 SAM . . . D 4 -6.423 -1.018 -18.906 1 25.91 ? C4 SAM 301 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#