data_3BWM # _model_server_result.job_id iJWl4w9xtH8teMqk8B856g _model_server_result.datetime_utc '2024-11-04 22:41:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 3BWM # _exptl.entry_id 3BWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.106 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-DINITROCATECHOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BWM _cell.length_a 43.284 _cell.length_b 66.648 _cell.length_c 68.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 140 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A OD2 ASP 168 A ASP 169 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A OD1 ASN 169 A ASN 170 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 A O ARG 183 A ARG 184 1_555 C K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A O SER 185 A SER 186 1_555 C K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 A O PHE 188 A PHE 189 1_555 C K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc7 B MG MG . A MG 300 1_555 E O1 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc8 B MG MG . A MG 300 1_555 E O2 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc9 B MG MG . A MG 300 1_555 F O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc10 C K K . A K 303 1_555 F O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc11 C K K . A K 303 1_555 F O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? # _chem_comp.formula 'C6 H4 N2 O6' _chem_comp.formula_weight 200.106 _chem_comp.id DNC _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-DINITROCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DNC sing 83 n n C1 C2 DNC doub 84 n y C1 C6 DNC sing 85 n y O1 HO1 DNC sing 86 n n C2 O2 DNC sing 87 n n C2 C3 DNC sing 88 n y O2 HO2 DNC sing 89 n n C3 N1 DNC sing 90 n n C3 C4 DNC doub 91 n y N1 O3 DNC sing 92 n n N1 O4 DNC doub 93 n n C4 C5 DNC sing 94 n y C4 H4 DNC sing 95 n n C5 N2 DNC sing 96 n n C5 C6 DNC doub 97 n y N2 O5 DNC sing 98 n n N2 O6 DNC doub 99 n n C6 H6 DNC sing 100 n n # _atom_sites.entry_id 3BWM _atom_sites.fract_transf_matrix[1][1] 0.023103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 300 300 MG MG . C 3 K A 1 303 303 K K . D 4 SAM A 1 301 301 SAM SAM . E 5 DNC A 1 302 302 DNC DNC . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 404 HOH HOH . F 6 HOH A 5 405 405 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 407 HOH HOH . F 6 HOH A 8 408 408 HOH HOH . F 6 HOH A 9 409 409 HOH HOH . F 6 HOH A 10 410 410 HOH HOH . F 6 HOH A 11 411 411 HOH HOH . F 6 HOH A 12 412 412 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 414 HOH HOH . F 6 HOH A 15 415 415 HOH HOH . F 6 HOH A 16 416 416 HOH HOH . F 6 HOH A 17 417 417 HOH HOH . F 6 HOH A 18 418 418 HOH HOH . F 6 HOH A 19 419 419 HOH HOH . F 6 HOH A 20 420 420 HOH HOH . F 6 HOH A 21 421 421 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 424 HOH HOH . F 6 HOH A 25 425 425 HOH HOH . F 6 HOH A 26 426 426 HOH HOH . F 6 HOH A 27 427 427 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . F 6 HOH A 38 438 438 HOH HOH . F 6 HOH A 39 439 439 HOH HOH . F 6 HOH A 40 440 440 HOH HOH . F 6 HOH A 41 441 441 HOH HOH . F 6 HOH A 42 442 442 HOH HOH . F 6 HOH A 43 443 443 HOH HOH . F 6 HOH A 44 444 444 HOH HOH . F 6 HOH A 45 445 445 HOH HOH . F 6 HOH A 46 446 446 HOH HOH . F 6 HOH A 47 447 447 HOH HOH . F 6 HOH A 48 448 448 HOH HOH . F 6 HOH A 49 449 449 HOH HOH . F 6 HOH A 50 450 450 HOH HOH . F 6 HOH A 51 451 451 HOH HOH . F 6 HOH A 52 452 452 HOH HOH . F 6 HOH A 53 453 453 HOH HOH . F 6 HOH A 54 454 454 HOH HOH . F 6 HOH A 55 455 455 HOH HOH . F 6 HOH A 56 456 456 HOH HOH . F 6 HOH A 57 457 457 HOH HOH . F 6 HOH A 58 458 458 HOH HOH . F 6 HOH A 59 459 459 HOH HOH . F 6 HOH A 60 460 460 HOH HOH . F 6 HOH A 61 461 461 HOH HOH . F 6 HOH A 62 462 462 HOH HOH . F 6 HOH A 63 463 463 HOH HOH . F 6 HOH A 64 464 464 HOH HOH . F 6 HOH A 65 465 465 HOH HOH . F 6 HOH A 66 466 466 HOH HOH . F 6 HOH A 67 467 467 HOH HOH . F 6 HOH A 68 468 468 HOH HOH . F 6 HOH A 69 469 469 HOH HOH . F 6 HOH A 70 470 470 HOH HOH . F 6 HOH A 71 471 471 HOH HOH . F 6 HOH A 72 472 472 HOH HOH . F 6 HOH A 73 473 473 HOH HOH . F 6 HOH A 74 474 474 HOH HOH . F 6 HOH A 75 475 475 HOH HOH . F 6 HOH A 76 476 476 HOH HOH . F 6 HOH A 77 477 477 HOH HOH . F 6 HOH A 78 478 478 HOH HOH . F 6 HOH A 79 479 479 HOH HOH . F 6 HOH A 80 480 480 HOH HOH . F 6 HOH A 81 481 481 HOH HOH . F 6 HOH A 82 482 482 HOH HOH . F 6 HOH A 83 483 483 HOH HOH . F 6 HOH A 84 484 484 HOH HOH . F 6 HOH A 85 485 485 HOH HOH . F 6 HOH A 86 486 486 HOH HOH . F 6 HOH A 87 487 487 HOH HOH . F 6 HOH A 88 488 488 HOH HOH . F 6 HOH A 89 489 489 HOH HOH . F 6 HOH A 90 490 490 HOH HOH . F 6 HOH A 91 491 491 HOH HOH . F 6 HOH A 92 492 492 HOH HOH . F 6 HOH A 93 493 493 HOH HOH . F 6 HOH A 94 494 494 HOH HOH . F 6 HOH A 95 495 495 HOH HOH . F 6 HOH A 96 496 496 HOH HOH . F 6 HOH A 97 497 497 HOH HOH . F 6 HOH A 98 498 498 HOH HOH . F 6 HOH A 99 499 499 HOH HOH . F 6 HOH A 100 500 500 HOH HOH . F 6 HOH A 101 501 501 HOH HOH . F 6 HOH A 102 502 502 HOH HOH . F 6 HOH A 103 503 503 HOH HOH . F 6 HOH A 104 504 504 HOH HOH . F 6 HOH A 105 505 505 HOH HOH . F 6 HOH A 106 506 506 HOH HOH . F 6 HOH A 107 507 507 HOH HOH . F 6 HOH A 108 508 508 HOH HOH . F 6 HOH A 109 509 509 HOH HOH . F 6 HOH A 110 510 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNC . . . E 5 -4.54 -12.555 -16.207 1 29.6 ? C1 DNC 302 A 1 HETATM 2 O O1 DNC . . . E 5 -4.979 -12.746 -14.93 1 29.22 ? O1 DNC 302 A 1 HETATM 3 C C2 DNC . . . E 5 -4.419 -11.187 -16.751 1 30.15 ? C2 DNC 302 A 1 HETATM 4 O O2 DNC . . . E 5 -4.73 -10.119 -15.972 1 28.09 ? O2 DNC 302 A 1 HETATM 5 C C3 DNC . . . E 5 -3.946 -11.022 -18.139 1 31.48 ? C3 DNC 302 A 1 HETATM 6 N N1 DNC . . . E 5 -3.797 -9.746 -18.696 1 34.24 ? N1 DNC 302 A 1 HETATM 7 O O3 DNC . . . E 5 -4.338 -8.772 -18.2 1 35.85 ? O3 DNC 302 A 1 HETATM 8 O O4 DNC . . . E 5 -3.105 -9.595 -19.686 1 37.06 ? O4 DNC 302 A 1 HETATM 9 C C4 DNC . . . E 5 -3.639 -12.157 -18.876 1 30.92 ? C4 DNC 302 A 1 HETATM 10 C C5 DNC . . . E 5 -3.773 -13.433 -18.328 1 30.26 ? C5 DNC 302 A 1 HETATM 11 N N2 DNC . . . E 5 -3.431 -14.541 -19.112 1 31.97 ? N2 DNC 302 A 1 HETATM 12 O O5 DNC . . . E 5 -3.053 -14.345 -20.251 1 31.12 ? O5 DNC 302 A 1 HETATM 13 O O6 DNC . . . E 5 -3.483 -15.692 -18.664 1 32.13 ? O6 DNC 302 A 1 HETATM 14 C C6 DNC . . . E 5 -4.211 -13.629 -17.016 1 30.05 ? C6 DNC 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #