data_3BWY # _model_server_result.job_id k64qDbhXvoTXFQq4BSjDfw _model_server_result.datetime_utc '2024-11-25 16:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3BWY # _exptl.entry_id 3BWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BWY _cell.length_a 43.249 _cell.length_b 66.163 _cell.length_c 68.519 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 140 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A OD2 ASP 168 A ASP 169 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A OD1 ASN 169 A ASN 170 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 B MG MG . A MG 300 1_555 D O1 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 B MG MG . A MG 300 1_555 D O2 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 B MG MG . A MG 300 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 316 n n N HN1 SAM sing 317 n n N HN2 SAM sing 318 n n CA C SAM sing 319 n n CA CB SAM sing 320 n n CA HA SAM sing 321 n n C O SAM doub 322 n n C OXT SAM sing 323 n n CB CG SAM sing 324 n n CB HB1 SAM sing 325 n n CB HB2 SAM sing 326 n n CG SD SAM sing 327 n n CG HG1 SAM sing 328 n n CG HG2 SAM sing 329 n n SD CE SAM sing 330 n n SD C5' SAM sing 331 n n CE HE1 SAM sing 332 n n CE HE2 SAM sing 333 n n CE HE3 SAM sing 334 n n C5' C4' SAM sing 335 n n C5' "H5'1" SAM sing 336 n n C5' "H5'2" SAM sing 337 n n C4' O4' SAM sing 338 n n C4' C3' SAM sing 339 n n C4' H4' SAM sing 340 n n O4' C1' SAM sing 341 n n C3' O3' SAM sing 342 n n C3' C2' SAM sing 343 n n C3' H3' SAM sing 344 n n O3' HO3' SAM sing 345 n n C2' O2' SAM sing 346 n n C2' C1' SAM sing 347 n n C2' H2' SAM sing 348 n n O2' HO2' SAM sing 349 n n C1' N9 SAM sing 350 n n C1' H1' SAM sing 351 n n N9 C8 SAM sing 352 n y N9 C4 SAM sing 353 n y C8 N7 SAM doub 354 n y C8 H8 SAM sing 355 n n N7 C5 SAM sing 356 n y C5 C6 SAM sing 357 n y C5 C4 SAM doub 358 n y C6 N6 SAM sing 359 n n C6 N1 SAM doub 360 n y N6 HN61 SAM sing 361 n n N6 HN62 SAM sing 362 n n N1 C2 SAM sing 363 n y C2 N3 SAM doub 364 n y C2 H2 SAM sing 365 n n N3 C4 SAM sing 366 n y # _atom_sites.entry_id 3BWY _atom_sites.fract_transf_matrix[1][1] 0.023122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 300 300 MG MG . C 3 SAM A 1 301 301 SAM SAM . D 4 DNC A 1 302 302 DNC DNC . E 5 MPD A 1 303 303 MPD MPD . F 5 MPD A 1 304 304 MPD MPD . G 5 MPD A 1 305 305 MPD MPD . H 6 HOH A 1 401 401 HOH HOH . H 6 HOH A 2 402 402 HOH HOH . H 6 HOH A 3 403 403 HOH HOH . H 6 HOH A 4 404 404 HOH HOH . H 6 HOH A 5 405 405 HOH HOH . H 6 HOH A 6 406 406 HOH HOH . H 6 HOH A 7 407 407 HOH HOH . H 6 HOH A 8 408 408 HOH HOH . H 6 HOH A 9 409 409 HOH HOH . H 6 HOH A 10 410 410 HOH HOH . H 6 HOH A 11 411 411 HOH HOH . H 6 HOH A 12 412 412 HOH HOH . H 6 HOH A 13 413 413 HOH HOH . H 6 HOH A 14 414 414 HOH HOH . H 6 HOH A 15 415 415 HOH HOH . H 6 HOH A 16 416 416 HOH HOH . H 6 HOH A 17 417 417 HOH HOH . H 6 HOH A 18 418 418 HOH HOH . H 6 HOH A 19 419 419 HOH HOH . H 6 HOH A 20 421 421 HOH HOH . H 6 HOH A 21 422 422 HOH HOH . H 6 HOH A 22 423 423 HOH HOH . H 6 HOH A 23 424 424 HOH HOH . H 6 HOH A 24 425 425 HOH HOH . H 6 HOH A 25 426 426 HOH HOH . H 6 HOH A 26 427 427 HOH HOH . H 6 HOH A 27 428 428 HOH HOH . H 6 HOH A 28 429 429 HOH HOH . H 6 HOH A 29 430 430 HOH HOH . H 6 HOH A 30 431 431 HOH HOH . H 6 HOH A 31 432 432 HOH HOH . H 6 HOH A 32 433 433 HOH HOH . H 6 HOH A 33 434 434 HOH HOH . H 6 HOH A 34 435 435 HOH HOH . H 6 HOH A 35 436 436 HOH HOH . H 6 HOH A 36 437 437 HOH HOH . H 6 HOH A 37 438 438 HOH HOH . H 6 HOH A 38 439 439 HOH HOH . H 6 HOH A 39 440 440 HOH HOH . H 6 HOH A 40 441 441 HOH HOH . H 6 HOH A 41 443 443 HOH HOH . H 6 HOH A 42 444 444 HOH HOH . H 6 HOH A 43 445 445 HOH HOH . H 6 HOH A 44 446 446 HOH HOH . H 6 HOH A 45 447 447 HOH HOH . H 6 HOH A 46 448 448 HOH HOH . H 6 HOH A 47 449 449 HOH HOH . H 6 HOH A 48 450 450 HOH HOH . H 6 HOH A 49 451 451 HOH HOH . H 6 HOH A 50 452 452 HOH HOH . H 6 HOH A 51 453 453 HOH HOH . H 6 HOH A 52 454 454 HOH HOH . H 6 HOH A 53 455 455 HOH HOH . H 6 HOH A 54 456 456 HOH HOH . H 6 HOH A 55 457 457 HOH HOH . H 6 HOH A 56 458 458 HOH HOH . H 6 HOH A 57 459 459 HOH HOH . H 6 HOH A 58 460 460 HOH HOH . H 6 HOH A 59 461 461 HOH HOH . H 6 HOH A 60 462 462 HOH HOH . H 6 HOH A 61 463 463 HOH HOH . H 6 HOH A 62 464 464 HOH HOH . H 6 HOH A 63 465 465 HOH HOH . H 6 HOH A 64 466 466 HOH HOH . H 6 HOH A 65 467 467 HOH HOH . H 6 HOH A 66 469 469 HOH HOH . H 6 HOH A 67 470 470 HOH HOH . H 6 HOH A 68 471 471 HOH HOH . H 6 HOH A 69 472 472 HOH HOH . H 6 HOH A 70 473 473 HOH HOH . H 6 HOH A 71 474 474 HOH HOH . H 6 HOH A 72 475 475 HOH HOH . H 6 HOH A 73 476 476 HOH HOH . H 6 HOH A 74 477 477 HOH HOH . H 6 HOH A 75 478 478 HOH HOH . H 6 HOH A 76 479 479 HOH HOH . H 6 HOH A 77 480 480 HOH HOH . H 6 HOH A 78 481 481 HOH HOH . H 6 HOH A 79 483 483 HOH HOH . H 6 HOH A 80 484 484 HOH HOH . H 6 HOH A 81 485 485 HOH HOH . H 6 HOH A 82 486 486 HOH HOH . H 6 HOH A 83 487 487 HOH HOH . H 6 HOH A 84 489 489 HOH HOH . H 6 HOH A 85 490 490 HOH HOH . H 6 HOH A 86 491 491 HOH HOH . H 6 HOH A 87 492 492 HOH HOH . H 6 HOH A 88 493 493 HOH HOH . H 6 HOH A 89 494 494 HOH HOH . H 6 HOH A 90 495 495 HOH HOH . H 6 HOH A 91 496 496 HOH HOH . H 6 HOH A 92 497 497 HOH HOH . H 6 HOH A 93 498 498 HOH HOH . H 6 HOH A 94 499 499 HOH HOH . H 6 HOH A 95 500 500 HOH HOH . H 6 HOH A 96 501 501 HOH HOH . H 6 HOH A 97 502 502 HOH HOH . H 6 HOH A 98 505 505 HOH HOH . H 6 HOH A 99 506 506 HOH HOH . H 6 HOH A 100 507 507 HOH HOH . H 6 HOH A 101 508 508 HOH HOH . H 6 HOH A 102 510 510 HOH HOH . H 6 HOH A 103 511 511 HOH HOH . H 6 HOH A 104 512 512 HOH HOH . H 6 HOH A 105 515 515 HOH HOH . H 6 HOH A 106 516 516 HOH HOH . H 6 HOH A 107 517 517 HOH HOH . H 6 HOH A 108 518 518 HOH HOH . H 6 HOH A 109 519 519 HOH HOH . H 6 HOH A 110 520 520 HOH HOH . H 6 HOH A 111 522 522 HOH HOH . H 6 HOH A 112 523 523 HOH HOH . H 6 HOH A 113 524 524 HOH HOH . H 6 HOH A 114 525 525 HOH HOH . H 6 HOH A 115 526 526 HOH HOH . H 6 HOH A 116 529 529 HOH HOH . H 6 HOH A 117 530 530 HOH HOH . H 6 HOH A 118 531 531 HOH HOH . H 6 HOH A 119 532 532 HOH HOH . H 6 HOH A 120 533 533 HOH HOH . H 6 HOH A 121 534 534 HOH HOH . H 6 HOH A 122 535 535 HOH HOH . H 6 HOH A 123 536 536 HOH HOH . H 6 HOH A 124 537 537 HOH HOH . H 6 HOH A 125 538 538 HOH HOH . H 6 HOH A 126 539 539 HOH HOH . H 6 HOH A 127 540 540 HOH HOH . H 6 HOH A 128 541 541 HOH HOH . H 6 HOH A 129 543 543 HOH HOH . H 6 HOH A 130 544 544 HOH HOH . H 6 HOH A 131 545 545 HOH HOH . H 6 HOH A 132 546 546 HOH HOH . H 6 HOH A 133 547 547 HOH HOH . H 6 HOH A 134 548 548 HOH HOH . H 6 HOH A 135 549 549 HOH HOH . H 6 HOH A 136 550 550 HOH HOH . H 6 HOH A 137 551 551 HOH HOH . H 6 HOH A 138 552 552 HOH HOH . H 6 HOH A 139 553 553 HOH HOH . H 6 HOH A 140 554 554 HOH HOH . H 6 HOH A 141 555 555 HOH HOH . H 6 HOH A 142 556 556 HOH HOH . H 6 HOH A 143 557 557 HOH HOH . H 6 HOH A 144 558 558 HOH HOH . H 6 HOH A 145 559 559 HOH HOH . H 6 HOH A 146 560 560 HOH HOH . H 6 HOH A 147 561 561 HOH HOH . H 6 HOH A 148 562 562 HOH HOH . H 6 HOH A 149 563 563 HOH HOH . H 6 HOH A 150 564 564 HOH HOH . H 6 HOH A 151 565 565 HOH HOH . H 6 HOH A 152 566 566 HOH HOH . H 6 HOH A 153 567 567 HOH HOH . H 6 HOH A 154 568 568 HOH HOH . H 6 HOH A 155 569 569 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 -9.361 -7.101 -12.783 1 13.75 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . C 3 -10.294 -7.794 -13.737 1 13.88 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . C 3 -10.976 -8.94 -12.998 1 15.39 ? C SAM 301 A 1 HETATM 4 O O SAM . . . C 3 -10.267 -9.62 -12.237 1 15.84 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . C 3 -12.161 -9.192 -13.205 1 17.75 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . C 3 -9.612 -8.353 -14.981 1 14.58 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . C 3 -8.92 -7.262 -15.803 1 15.83 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . C 3 -8.291 -7.948 -17.321 1 17.62 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . C 3 -6.846 -8.833 -16.685 1 18.12 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . C 3 -7.27 -6.495 -17.905 1 20.16 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . C 3 -7.914 -5.203 -18.44 1 17.6 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . C 3 -7.118 -4.024 -18.343 1 17.32 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . C 3 -8.568 -5.291 -19.814 1 15.84 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . C 3 -9.955 -5.062 -19.638 1 17.78 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . C 3 -7.928 -4.118 -20.555 1 13.28 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . C 3 -8.75 -3.459 -21.528 1 15.91 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . C 3 -7.556 -3.173 -19.422 1 13.63 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . C 3 -6.446 -2.283 -19.662 1 13.85 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . C 3 -5.263 -2.546 -20.351 1 14.3 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . C 3 -4.436 -1.474 -20.239 1 16.4 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . C 3 -5.093 -0.527 -19.479 1 14.34 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . C 3 -4.718 0.742 -19.011 1 14.88 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . C 3 -3.537 1.313 -19.325 1 16.89 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . C 3 -5.584 1.418 -18.225 1 15.2 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . C 3 -6.844 0.854 -17.926 1 15.19 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . C 3 -7.22 -0.384 -18.351 1 14.49 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . C 3 -6.34 -1.056 -19.108 1 13.41 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #