data_3BWY # _model_server_result.job_id O6kbeGMi352IbRYAfsy-Ug _model_server_result.datetime_utc '2024-11-05 23:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 3BWY # _exptl.entry_id 3BWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BWY _cell.length_a 43.249 _cell.length_b 66.163 _cell.length_c 68.519 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 140 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A OD2 ASP 168 A ASP 169 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A OD1 ASN 169 A ASN 170 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 B MG MG . A MG 300 1_555 D O1 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 B MG MG . A MG 300 1_555 D O2 DNC . A DNC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 B MG MG . A MG 300 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 255 n n C1 H11 MPD sing 256 n n C1 H12 MPD sing 257 n n C1 H13 MPD sing 258 n n C2 O2 MPD sing 259 n n C2 CM MPD sing 260 n n C2 C3 MPD sing 261 n n O2 HO2 MPD sing 262 n n CM HM1 MPD sing 263 n n CM HM2 MPD sing 264 n n CM HM3 MPD sing 265 n n C3 C4 MPD sing 266 n n C3 H31 MPD sing 267 n n C3 H32 MPD sing 268 n n C4 O4 MPD sing 269 n n C4 C5 MPD sing 270 n n C4 H4 MPD sing 271 n n O4 HO4 MPD sing 272 n n C5 H51 MPD sing 273 n n C5 H52 MPD sing 274 n n C5 H53 MPD sing 275 n n # _atom_sites.entry_id 3BWY _atom_sites.fract_transf_matrix[1][1] 0.023122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 300 300 MG MG . C 3 SAM A 1 301 301 SAM SAM . D 4 DNC A 1 302 302 DNC DNC . E 5 MPD A 1 303 303 MPD MPD . F 5 MPD A 1 304 304 MPD MPD . G 5 MPD A 1 305 305 MPD MPD . H 6 HOH A 1 401 401 HOH HOH . H 6 HOH A 2 402 402 HOH HOH . H 6 HOH A 3 403 403 HOH HOH . H 6 HOH A 4 404 404 HOH HOH . H 6 HOH A 5 405 405 HOH HOH . H 6 HOH A 6 406 406 HOH HOH . H 6 HOH A 7 407 407 HOH HOH . H 6 HOH A 8 408 408 HOH HOH . H 6 HOH A 9 409 409 HOH HOH . H 6 HOH A 10 410 410 HOH HOH . H 6 HOH A 11 411 411 HOH HOH . H 6 HOH A 12 412 412 HOH HOH . H 6 HOH A 13 413 413 HOH HOH . H 6 HOH A 14 414 414 HOH HOH . H 6 HOH A 15 415 415 HOH HOH . H 6 HOH A 16 416 416 HOH HOH . H 6 HOH A 17 417 417 HOH HOH . H 6 HOH A 18 418 418 HOH HOH . H 6 HOH A 19 419 419 HOH HOH . H 6 HOH A 20 421 421 HOH HOH . H 6 HOH A 21 422 422 HOH HOH . H 6 HOH A 22 423 423 HOH HOH . H 6 HOH A 23 424 424 HOH HOH . H 6 HOH A 24 425 425 HOH HOH . H 6 HOH A 25 426 426 HOH HOH . H 6 HOH A 26 427 427 HOH HOH . H 6 HOH A 27 428 428 HOH HOH . H 6 HOH A 28 429 429 HOH HOH . H 6 HOH A 29 430 430 HOH HOH . H 6 HOH A 30 431 431 HOH HOH . H 6 HOH A 31 432 432 HOH HOH . H 6 HOH A 32 433 433 HOH HOH . H 6 HOH A 33 434 434 HOH HOH . H 6 HOH A 34 435 435 HOH HOH . H 6 HOH A 35 436 436 HOH HOH . H 6 HOH A 36 437 437 HOH HOH . H 6 HOH A 37 438 438 HOH HOH . H 6 HOH A 38 439 439 HOH HOH . H 6 HOH A 39 440 440 HOH HOH . H 6 HOH A 40 441 441 HOH HOH . H 6 HOH A 41 443 443 HOH HOH . H 6 HOH A 42 444 444 HOH HOH . H 6 HOH A 43 445 445 HOH HOH . H 6 HOH A 44 446 446 HOH HOH . H 6 HOH A 45 447 447 HOH HOH . H 6 HOH A 46 448 448 HOH HOH . H 6 HOH A 47 449 449 HOH HOH . H 6 HOH A 48 450 450 HOH HOH . H 6 HOH A 49 451 451 HOH HOH . H 6 HOH A 50 452 452 HOH HOH . H 6 HOH A 51 453 453 HOH HOH . H 6 HOH A 52 454 454 HOH HOH . H 6 HOH A 53 455 455 HOH HOH . H 6 HOH A 54 456 456 HOH HOH . H 6 HOH A 55 457 457 HOH HOH . H 6 HOH A 56 458 458 HOH HOH . H 6 HOH A 57 459 459 HOH HOH . H 6 HOH A 58 460 460 HOH HOH . H 6 HOH A 59 461 461 HOH HOH . H 6 HOH A 60 462 462 HOH HOH . H 6 HOH A 61 463 463 HOH HOH . H 6 HOH A 62 464 464 HOH HOH . H 6 HOH A 63 465 465 HOH HOH . H 6 HOH A 64 466 466 HOH HOH . H 6 HOH A 65 467 467 HOH HOH . H 6 HOH A 66 469 469 HOH HOH . H 6 HOH A 67 470 470 HOH HOH . H 6 HOH A 68 471 471 HOH HOH . H 6 HOH A 69 472 472 HOH HOH . H 6 HOH A 70 473 473 HOH HOH . H 6 HOH A 71 474 474 HOH HOH . H 6 HOH A 72 475 475 HOH HOH . H 6 HOH A 73 476 476 HOH HOH . H 6 HOH A 74 477 477 HOH HOH . H 6 HOH A 75 478 478 HOH HOH . H 6 HOH A 76 479 479 HOH HOH . H 6 HOH A 77 480 480 HOH HOH . H 6 HOH A 78 481 481 HOH HOH . H 6 HOH A 79 483 483 HOH HOH . H 6 HOH A 80 484 484 HOH HOH . H 6 HOH A 81 485 485 HOH HOH . H 6 HOH A 82 486 486 HOH HOH . H 6 HOH A 83 487 487 HOH HOH . H 6 HOH A 84 489 489 HOH HOH . H 6 HOH A 85 490 490 HOH HOH . H 6 HOH A 86 491 491 HOH HOH . H 6 HOH A 87 492 492 HOH HOH . H 6 HOH A 88 493 493 HOH HOH . H 6 HOH A 89 494 494 HOH HOH . H 6 HOH A 90 495 495 HOH HOH . H 6 HOH A 91 496 496 HOH HOH . H 6 HOH A 92 497 497 HOH HOH . H 6 HOH A 93 498 498 HOH HOH . H 6 HOH A 94 499 499 HOH HOH . H 6 HOH A 95 500 500 HOH HOH . H 6 HOH A 96 501 501 HOH HOH . H 6 HOH A 97 502 502 HOH HOH . H 6 HOH A 98 505 505 HOH HOH . H 6 HOH A 99 506 506 HOH HOH . H 6 HOH A 100 507 507 HOH HOH . H 6 HOH A 101 508 508 HOH HOH . H 6 HOH A 102 510 510 HOH HOH . H 6 HOH A 103 511 511 HOH HOH . H 6 HOH A 104 512 512 HOH HOH . H 6 HOH A 105 515 515 HOH HOH . H 6 HOH A 106 516 516 HOH HOH . H 6 HOH A 107 517 517 HOH HOH . H 6 HOH A 108 518 518 HOH HOH . H 6 HOH A 109 519 519 HOH HOH . H 6 HOH A 110 520 520 HOH HOH . H 6 HOH A 111 522 522 HOH HOH . H 6 HOH A 112 523 523 HOH HOH . H 6 HOH A 113 524 524 HOH HOH . H 6 HOH A 114 525 525 HOH HOH . H 6 HOH A 115 526 526 HOH HOH . H 6 HOH A 116 529 529 HOH HOH . H 6 HOH A 117 530 530 HOH HOH . H 6 HOH A 118 531 531 HOH HOH . H 6 HOH A 119 532 532 HOH HOH . H 6 HOH A 120 533 533 HOH HOH . H 6 HOH A 121 534 534 HOH HOH . H 6 HOH A 122 535 535 HOH HOH . H 6 HOH A 123 536 536 HOH HOH . H 6 HOH A 124 537 537 HOH HOH . H 6 HOH A 125 538 538 HOH HOH . H 6 HOH A 126 539 539 HOH HOH . H 6 HOH A 127 540 540 HOH HOH . H 6 HOH A 128 541 541 HOH HOH . H 6 HOH A 129 543 543 HOH HOH . H 6 HOH A 130 544 544 HOH HOH . H 6 HOH A 131 545 545 HOH HOH . H 6 HOH A 132 546 546 HOH HOH . H 6 HOH A 133 547 547 HOH HOH . H 6 HOH A 134 548 548 HOH HOH . H 6 HOH A 135 549 549 HOH HOH . H 6 HOH A 136 550 550 HOH HOH . H 6 HOH A 137 551 551 HOH HOH . H 6 HOH A 138 552 552 HOH HOH . H 6 HOH A 139 553 553 HOH HOH . H 6 HOH A 140 554 554 HOH HOH . H 6 HOH A 141 555 555 HOH HOH . H 6 HOH A 142 556 556 HOH HOH . H 6 HOH A 143 557 557 HOH HOH . H 6 HOH A 144 558 558 HOH HOH . H 6 HOH A 145 559 559 HOH HOH . H 6 HOH A 146 560 560 HOH HOH . H 6 HOH A 147 561 561 HOH HOH . H 6 HOH A 148 562 562 HOH HOH . H 6 HOH A 149 563 563 HOH HOH . H 6 HOH A 150 564 564 HOH HOH . H 6 HOH A 151 565 565 HOH HOH . H 6 HOH A 152 566 566 HOH HOH . H 6 HOH A 153 567 567 HOH HOH . H 6 HOH A 154 568 568 HOH HOH . H 6 HOH A 155 569 569 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 5 -4.547 6.038 7.336 1 23.15 ? C1 MPD 304 A 1 HETATM 2 C C2 MPD . . . F 5 -5.797 6.623 7.927 1 21.29 ? C2 MPD 304 A 1 HETATM 3 O O2 MPD . . . F 5 -5.576 8.041 7.958 1 21.82 ? O2 MPD 304 A 1 HETATM 4 C CM MPD . . . F 5 -6.006 6.066 9.321 1 22.74 ? CM MPD 304 A 1 HETATM 5 C C3 MPD . . . F 5 -7.102 6.276 7.225 1 34.16 ? C3 MPD 304 A 1 HETATM 6 C C4 MPD . . . F 5 -7.214 6.648 5.763 1 43.29 ? C4 MPD 304 A 1 HETATM 7 O O4 MPD . . . F 5 -7.47 8.028 5.608 1 52.19 ? O4 MPD 304 A 1 HETATM 8 C C5 MPD . . . F 5 -8.388 5.884 5.207 1 44.97 ? C5 MPD 304 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #