data_3BXD # _model_server_result.job_id aK9djimLPpWDlgnFlkr7sA _model_server_result.datetime_utc '2024-11-16 13:48:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":304}' # _entry.id 3BXD # _exptl.entry_id 3BXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 17.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROXIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BXD _cell.length_a 44.6 _cell.length_b 77.2 _cell.length_c 85.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 98 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A NE2 HIS 127 A HIS 123 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 A OD2 ASP 128 A ASP 124 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 A OD1 ASP 128 A ASP 124 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 A NE2 HIS 198 A HIS 194 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 A NE2 HIS 224 A HIS 220 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 A OD1 ASP 257 A ASP 253 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 B FE FE . A FE 301 1_555 D O OH . A OH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc9 B FE FE . A FE 301 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc10 C FE FE . A FE 302 1_555 E O1 INS . A INS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc11 C FE FE . A FE 302 1_555 E O6 INS . A INS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc12 C FE FE . A FE 302 1_555 D O OH . A OH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'H O -1' _chem_comp.formula_weight 17.007 _chem_comp.id OH _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROXIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O _chem_comp_bond.atom_id_2 HO _chem_comp_bond.comp_id OH _chem_comp_bond.value_order sing _chem_comp_bond.pdbx_ordinal 265 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 3BXD _atom_sites.fract_transf_matrix[1][1] 0.022422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 301 FE FE . C 2 FE A 1 302 302 FE FE . D 3 OH A 1 304 304 OH OH . E 4 INS A 1 303 303 INS INS . F 5 FMT A 1 305 154 FMT FMT . G 6 HOH A 1 306 1 HOH HOH . G 6 HOH A 2 307 2 HOH HOH . G 6 HOH A 3 308 3 HOH HOH . G 6 HOH A 4 309 4 HOH HOH . G 6 HOH A 5 310 5 HOH HOH . G 6 HOH A 6 311 6 HOH HOH . G 6 HOH A 7 312 7 HOH HOH . G 6 HOH A 8 313 8 HOH HOH . G 6 HOH A 9 314 9 HOH HOH . G 6 HOH A 10 315 10 HOH HOH . G 6 HOH A 11 316 11 HOH HOH . G 6 HOH A 12 317 12 HOH HOH . G 6 HOH A 13 318 13 HOH HOH . G 6 HOH A 14 319 14 HOH HOH . G 6 HOH A 15 320 15 HOH HOH . G 6 HOH A 16 321 16 HOH HOH . G 6 HOH A 17 322 17 HOH HOH . G 6 HOH A 18 323 18 HOH HOH . G 6 HOH A 19 324 19 HOH HOH . G 6 HOH A 20 325 20 HOH HOH . G 6 HOH A 21 326 21 HOH HOH . G 6 HOH A 22 327 22 HOH HOH . G 6 HOH A 23 328 23 HOH HOH . G 6 HOH A 24 329 24 HOH HOH . G 6 HOH A 25 330 25 HOH HOH . G 6 HOH A 26 331 26 HOH HOH . G 6 HOH A 27 332 27 HOH HOH . G 6 HOH A 28 333 28 HOH HOH . G 6 HOH A 29 334 29 HOH HOH . G 6 HOH A 30 335 30 HOH HOH . G 6 HOH A 31 336 31 HOH HOH . G 6 HOH A 32 337 32 HOH HOH . G 6 HOH A 33 338 33 HOH HOH . G 6 HOH A 34 339 34 HOH HOH . G 6 HOH A 35 340 35 HOH HOH . G 6 HOH A 36 341 36 HOH HOH . G 6 HOH A 37 342 37 HOH HOH . G 6 HOH A 38 343 38 HOH HOH . G 6 HOH A 39 344 39 HOH HOH . G 6 HOH A 40 345 40 HOH HOH . G 6 HOH A 41 346 41 HOH HOH . G 6 HOH A 42 347 42 HOH HOH . G 6 HOH A 43 348 43 HOH HOH . G 6 HOH A 44 349 44 HOH HOH . G 6 HOH A 45 350 45 HOH HOH . G 6 HOH A 46 351 46 HOH HOH . G 6 HOH A 47 352 47 HOH HOH . G 6 HOH A 48 353 48 HOH HOH . G 6 HOH A 49 354 49 HOH HOH . G 6 HOH A 50 355 50 HOH HOH . G 6 HOH A 51 356 51 HOH HOH . G 6 HOH A 52 357 52 HOH HOH . G 6 HOH A 53 358 53 HOH HOH . G 6 HOH A 54 359 54 HOH HOH . G 6 HOH A 55 360 55 HOH HOH . G 6 HOH A 56 361 56 HOH HOH . G 6 HOH A 57 362 57 HOH HOH . G 6 HOH A 58 363 58 HOH HOH . G 6 HOH A 59 364 59 HOH HOH . G 6 HOH A 60 365 60 HOH HOH . G 6 HOH A 61 366 61 HOH HOH . G 6 HOH A 62 367 62 HOH HOH . G 6 HOH A 63 368 63 HOH HOH . G 6 HOH A 64 369 64 HOH HOH . G 6 HOH A 65 370 65 HOH HOH . G 6 HOH A 66 371 66 HOH HOH . G 6 HOH A 67 372 67 HOH HOH . G 6 HOH A 68 373 68 HOH HOH . G 6 HOH A 69 374 70 HOH HOH . G 6 HOH A 70 375 71 HOH HOH . G 6 HOH A 71 376 72 HOH HOH . G 6 HOH A 72 377 73 HOH HOH . G 6 HOH A 73 378 74 HOH HOH . G 6 HOH A 74 379 75 HOH HOH . G 6 HOH A 75 380 76 HOH HOH . G 6 HOH A 76 381 77 HOH HOH . G 6 HOH A 77 382 78 HOH HOH . G 6 HOH A 78 383 79 HOH HOH . G 6 HOH A 79 384 80 HOH HOH . G 6 HOH A 80 385 81 HOH HOH . G 6 HOH A 81 386 82 HOH HOH . G 6 HOH A 82 387 83 HOH HOH . G 6 HOH A 83 388 84 HOH HOH . G 6 HOH A 84 389 85 HOH HOH . G 6 HOH A 85 390 86 HOH HOH . G 6 HOH A 86 391 87 HOH HOH . G 6 HOH A 87 392 88 HOH HOH . G 6 HOH A 88 393 89 HOH HOH . G 6 HOH A 89 394 90 HOH HOH . G 6 HOH A 90 395 91 HOH HOH . G 6 HOH A 91 396 92 HOH HOH . G 6 HOH A 92 397 93 HOH HOH . G 6 HOH A 93 398 94 HOH HOH . G 6 HOH A 94 399 95 HOH HOH . G 6 HOH A 95 400 96 HOH HOH . G 6 HOH A 96 401 97 HOH HOH . G 6 HOH A 97 402 98 HOH HOH . G 6 HOH A 98 403 99 HOH HOH . G 6 HOH A 99 404 100 HOH HOH . G 6 HOH A 100 405 101 HOH HOH . G 6 HOH A 101 406 102 HOH HOH . G 6 HOH A 102 407 103 HOH HOH . G 6 HOH A 103 408 104 HOH HOH . G 6 HOH A 104 409 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol O _atom_site.label_atom_id O _atom_site.label_comp_id OH _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.89 _atom_site.Cartn_y 23.642 _atom_site.Cartn_z 29.001 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id O _atom_site.auth_comp_id OH _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #