data_3BXL # _model_server_result.job_id 2hDnM6TEdW6k2FiOt7XvnA _model_server_result.datetime_utc '2024-12-26 10:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":151}' # _entry.id 3BXL # _exptl.entry_id 3BXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BXL _cell.length_a 124.606 _cell.length_b 124.606 _cell.length_c 74.024 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 x,-y-1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 -62.303 18.506 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 A OD2 ASP 24 A ASP 24 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc13 A OD1 ASP 93 A ASP 93 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc14 A OD2 ASP 95 A ASP 95 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc19 A OD2 ASP 129 A ASP 129 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc20 A OD1 ASP 131 A ASP 131 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc21 A OD1 ASP 133 A ASP 133 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc25 C CA CA . A CA 149 1_555 I O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc26 D CA CA . A CA 150 1_555 I O HOH . A HOH 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc27 E CA CA . A CA 151 1_555 I O HOH . A HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc28 F CA CA . A CA 152 1_555 I O HOH . A HOH 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc29 F CA CA . A CA 152 1_555 I O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BXL _atom_sites.fract_transf_matrix[1][1] 0.008025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 149 1 CA CA . D 3 CA A 1 150 2 CA CA . E 3 CA A 1 151 3 CA CA . F 3 CA A 1 152 4 CA CA . G 4 SO4 A 1 153 1 SO4 SO4 . H 4 SO4 A 1 154 2 SO4 SO4 . I 5 HOH A 1 155 1 HOH HOH . I 5 HOH A 2 156 3 HOH HOH . I 5 HOH A 3 157 4 HOH HOH . I 5 HOH A 4 158 5 HOH HOH . I 5 HOH A 5 159 6 HOH HOH . I 5 HOH A 6 160 7 HOH HOH . I 5 HOH A 7 161 8 HOH HOH . I 5 HOH A 8 162 9 HOH HOH . I 5 HOH A 9 163 10 HOH HOH . I 5 HOH A 10 164 11 HOH HOH . I 5 HOH A 11 165 12 HOH HOH . I 5 HOH A 12 166 13 HOH HOH . I 5 HOH A 13 167 14 HOH HOH . I 5 HOH A 14 168 15 HOH HOH . I 5 HOH A 15 169 16 HOH HOH . I 5 HOH A 16 170 17 HOH HOH . I 5 HOH A 17 171 18 HOH HOH . I 5 HOH A 18 172 19 HOH HOH . I 5 HOH A 19 173 21 HOH HOH . I 5 HOH A 20 174 22 HOH HOH . I 5 HOH A 21 175 23 HOH HOH . I 5 HOH A 22 176 24 HOH HOH . I 5 HOH A 23 177 25 HOH HOH . I 5 HOH A 24 178 26 HOH HOH . I 5 HOH A 25 179 27 HOH HOH . I 5 HOH A 26 180 28 HOH HOH . I 5 HOH A 27 181 29 HOH HOH . I 5 HOH A 28 182 30 HOH HOH . I 5 HOH A 29 183 31 HOH HOH . I 5 HOH A 30 184 32 HOH HOH . I 5 HOH A 31 185 33 HOH HOH . I 5 HOH A 32 186 34 HOH HOH . I 5 HOH A 33 187 35 HOH HOH . I 5 HOH A 34 188 36 HOH HOH . I 5 HOH A 35 189 37 HOH HOH . I 5 HOH A 36 190 38 HOH HOH . I 5 HOH A 37 191 42 HOH HOH . I 5 HOH A 38 192 43 HOH HOH . I 5 HOH A 39 193 44 HOH HOH . I 5 HOH A 40 194 45 HOH HOH . I 5 HOH A 41 195 47 HOH HOH . I 5 HOH A 42 196 48 HOH HOH . I 5 HOH A 43 197 49 HOH HOH . I 5 HOH A 44 198 50 HOH HOH . I 5 HOH A 45 199 51 HOH HOH . I 5 HOH A 46 200 52 HOH HOH . I 5 HOH A 47 201 53 HOH HOH . I 5 HOH A 48 202 54 HOH HOH . I 5 HOH A 49 203 55 HOH HOH . I 5 HOH A 50 204 56 HOH HOH . I 5 HOH A 51 205 57 HOH HOH . I 5 HOH A 52 206 58 HOH HOH . I 5 HOH A 53 207 59 HOH HOH . I 5 HOH A 54 208 60 HOH HOH . I 5 HOH A 55 209 61 HOH HOH . I 5 HOH A 56 210 62 HOH HOH . I 5 HOH A 57 211 63 HOH HOH . I 5 HOH A 58 212 64 HOH HOH . I 5 HOH A 59 213 65 HOH HOH . I 5 HOH A 60 214 66 HOH HOH . I 5 HOH A 61 215 67 HOH HOH . I 5 HOH A 62 216 68 HOH HOH . I 5 HOH A 63 217 69 HOH HOH . I 5 HOH A 64 218 70 HOH HOH . I 5 HOH A 65 219 71 HOH HOH . I 5 HOH A 66 220 72 HOH HOH . I 5 HOH A 67 221 73 HOH HOH . I 5 HOH A 68 222 74 HOH HOH . I 5 HOH A 69 223 75 HOH HOH . I 5 HOH A 70 224 76 HOH HOH . I 5 HOH A 71 225 77 HOH HOH . I 5 HOH A 72 226 78 HOH HOH . I 5 HOH A 73 227 79 HOH HOH . I 5 HOH A 74 228 80 HOH HOH . I 5 HOH A 75 229 81 HOH HOH . I 5 HOH A 76 230 82 HOH HOH . I 5 HOH A 77 231 83 HOH HOH . I 5 HOH A 78 232 84 HOH HOH . I 5 HOH A 79 233 86 HOH HOH . I 5 HOH A 80 234 87 HOH HOH . I 5 HOH A 81 235 88 HOH HOH . I 5 HOH A 82 236 89 HOH HOH . I 5 HOH A 83 237 90 HOH HOH . I 5 HOH A 84 238 91 HOH HOH . I 5 HOH A 85 239 92 HOH HOH . I 5 HOH A 86 240 93 HOH HOH . I 5 HOH A 87 241 94 HOH HOH . I 5 HOH A 88 242 95 HOH HOH . I 5 HOH A 89 243 96 HOH HOH . I 5 HOH A 90 244 97 HOH HOH . I 5 HOH A 91 245 99 HOH HOH . I 5 HOH A 92 246 100 HOH HOH . I 5 HOH A 93 247 101 HOH HOH . I 5 HOH A 94 248 102 HOH HOH . I 5 HOH A 95 249 103 HOH HOH . I 5 HOH A 96 250 104 HOH HOH . I 5 HOH A 97 251 105 HOH HOH . I 5 HOH A 98 252 106 HOH HOH . I 5 HOH A 99 253 107 HOH HOH . I 5 HOH A 100 254 108 HOH HOH . I 5 HOH A 101 255 109 HOH HOH . I 5 HOH A 102 256 111 HOH HOH . I 5 HOH A 103 257 112 HOH HOH . I 5 HOH A 104 258 113 HOH HOH . I 5 HOH A 105 259 114 HOH HOH . I 5 HOH A 106 260 115 HOH HOH . I 5 HOH A 107 261 116 HOH HOH . I 5 HOH A 108 262 118 HOH HOH . I 5 HOH A 109 263 119 HOH HOH . I 5 HOH A 110 264 120 HOH HOH . I 5 HOH A 111 265 121 HOH HOH . I 5 HOH A 112 266 123 HOH HOH . I 5 HOH A 113 267 124 HOH HOH . I 5 HOH A 114 268 125 HOH HOH . I 5 HOH A 115 269 126 HOH HOH . I 5 HOH A 116 270 127 HOH HOH . I 5 HOH A 117 271 128 HOH HOH . I 5 HOH A 118 272 129 HOH HOH . I 5 HOH A 119 273 130 HOH HOH . I 5 HOH A 120 274 131 HOH HOH . I 5 HOH A 121 275 132 HOH HOH . I 5 HOH A 122 276 133 HOH HOH . I 5 HOH A 123 277 134 HOH HOH . I 5 HOH A 124 278 135 HOH HOH . I 5 HOH A 125 279 136 HOH HOH . I 5 HOH A 126 280 137 HOH HOH . I 5 HOH A 127 281 138 HOH HOH . J 5 HOH B 1 2 2 HOH HOH . J 5 HOH B 2 20 20 HOH HOH . J 5 HOH B 3 39 39 HOH HOH . J 5 HOH B 4 40 40 HOH HOH . J 5 HOH B 5 41 41 HOH HOH . J 5 HOH B 6 46 46 HOH HOH . J 5 HOH B 7 85 85 HOH HOH . J 5 HOH B 8 98 98 HOH HOH . J 5 HOH B 9 110 110 HOH HOH . J 5 HOH B 10 117 117 HOH HOH . J 5 HOH B 11 122 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.51 _atom_site.Cartn_y 1.57 _atom_site.Cartn_z 13.767 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 151 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #