data_3BXX # _model_server_result.job_id klamhuDU8axO5xnkwCt0ag _model_server_result.datetime_utc '2024-11-08 16:09:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":338}' # _entry.id 3BXX # _exptl.entry_id 3BXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BXX _cell.length_a 174.943 _cell.length_b 174.943 _cell.length_c 290.167 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,O,P,Q,V,Y 1 1 B,C,I,J,K,L,M,N,W,X 2 1 E,F,R,S,T,U,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 L N N ? 2 O N N ? 2 R N N ? 2 S N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 3BXX _atom_sites.fract_transf_matrix[1][1] 0.005716 _atom_sites.fract_transf_matrix[1][2] 0.0033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAP A 1 338 335 NAP NAP . H 3 QUE A 1 342 342 QUE QUE . I 2 NAP B 1 338 335 NAP NAP . J 3 QUE B 1 341 341 QUE QUE . K 3 QUE B 1 342 342 QUE QUE . L 2 NAP C 1 338 335 NAP NAP . M 3 QUE C 1 341 341 QUE QUE . N 3 QUE C 1 342 342 QUE QUE . O 2 NAP D 1 338 335 NAP NAP . P 3 QUE D 1 341 341 QUE QUE . Q 3 QUE D 1 342 342 QUE QUE . R 2 NAP E 1 338 335 NAP NAP . S 2 NAP F 1 338 335 NAP NAP . T 3 QUE F 1 341 341 QUE QUE . U 3 QUE F 1 342 342 QUE QUE . V 4 HOH A 1 343 8 HOH HOH . V 4 HOH A 2 344 13 HOH HOH . V 4 HOH A 3 345 20 HOH HOH . V 4 HOH A 4 346 23 HOH HOH . V 4 HOH A 5 347 30 HOH HOH . V 4 HOH A 6 348 36 HOH HOH . V 4 HOH A 7 349 42 HOH HOH . V 4 HOH A 8 350 50 HOH HOH . V 4 HOH A 9 351 69 HOH HOH . V 4 HOH A 10 352 73 HOH HOH . V 4 HOH A 11 353 94 HOH HOH . V 4 HOH A 12 354 105 HOH HOH . V 4 HOH A 13 355 117 HOH HOH . V 4 HOH A 14 356 127 HOH HOH . V 4 HOH A 15 357 129 HOH HOH . V 4 HOH A 16 358 142 HOH HOH . V 4 HOH A 17 359 236 HOH HOH . V 4 HOH A 18 360 253 HOH HOH . V 4 HOH A 19 361 258 HOH HOH . W 4 HOH B 1 343 5 HOH HOH . W 4 HOH B 2 344 14 HOH HOH . W 4 HOH B 3 345 21 HOH HOH . W 4 HOH B 4 346 31 HOH HOH . W 4 HOH B 5 347 38 HOH HOH . W 4 HOH B 6 348 46 HOH HOH . W 4 HOH B 7 349 48 HOH HOH . W 4 HOH B 8 350 61 HOH HOH . W 4 HOH B 9 351 62 HOH HOH . W 4 HOH B 10 352 84 HOH HOH . W 4 HOH B 11 353 85 HOH HOH . W 4 HOH B 12 354 86 HOH HOH . W 4 HOH B 13 355 112 HOH HOH . W 4 HOH B 14 356 207 HOH HOH . W 4 HOH B 15 357 252 HOH HOH . X 4 HOH C 1 343 7 HOH HOH . X 4 HOH C 2 344 18 HOH HOH . X 4 HOH C 3 345 37 HOH HOH . X 4 HOH C 4 346 39 HOH HOH . X 4 HOH C 5 347 41 HOH HOH . X 4 HOH C 6 348 43 HOH HOH . X 4 HOH C 7 349 45 HOH HOH . X 4 HOH C 8 350 80 HOH HOH . X 4 HOH C 9 351 90 HOH HOH . X 4 HOH C 10 352 91 HOH HOH . X 4 HOH C 11 353 120 HOH HOH . X 4 HOH C 12 354 130 HOH HOH . X 4 HOH C 13 355 205 HOH HOH . X 4 HOH C 14 356 238 HOH HOH . X 4 HOH C 15 357 242 HOH HOH . X 4 HOH C 16 358 251 HOH HOH . Y 4 HOH D 1 343 6 HOH HOH . Y 4 HOH D 2 344 11 HOH HOH . Y 4 HOH D 3 345 12 HOH HOH . Y 4 HOH D 4 346 15 HOH HOH . Y 4 HOH D 5 347 22 HOH HOH . Y 4 HOH D 6 348 29 HOH HOH . Y 4 HOH D 7 349 32 HOH HOH . Y 4 HOH D 8 350 34 HOH HOH . Y 4 HOH D 9 351 47 HOH HOH . Y 4 HOH D 10 352 53 HOH HOH . Y 4 HOH D 11 353 54 HOH HOH . Y 4 HOH D 12 354 67 HOH HOH . Y 4 HOH D 13 355 70 HOH HOH . Y 4 HOH D 14 356 72 HOH HOH . Y 4 HOH D 15 357 79 HOH HOH . Y 4 HOH D 16 358 82 HOH HOH . Y 4 HOH D 17 359 99 HOH HOH . Y 4 HOH D 18 360 104 HOH HOH . Y 4 HOH D 19 361 106 HOH HOH . Y 4 HOH D 20 362 115 HOH HOH . Y 4 HOH D 21 363 121 HOH HOH . Y 4 HOH D 22 364 122 HOH HOH . Y 4 HOH D 23 365 143 HOH HOH . Y 4 HOH D 24 366 204 HOH HOH . Y 4 HOH D 25 367 216 HOH HOH . Y 4 HOH D 26 368 237 HOH HOH . Y 4 HOH D 27 369 255 HOH HOH . Y 4 HOH D 28 370 265 HOH HOH . Y 4 HOH D 29 371 271 HOH HOH . Z 4 HOH E 1 339 1 HOH HOH . Z 4 HOH E 2 340 2 HOH HOH . Z 4 HOH E 3 341 3 HOH HOH . Z 4 HOH E 4 342 9 HOH HOH . Z 4 HOH E 5 343 16 HOH HOH . Z 4 HOH E 6 344 17 HOH HOH . Z 4 HOH E 7 345 28 HOH HOH . Z 4 HOH E 8 346 33 HOH HOH . Z 4 HOH E 9 347 40 HOH HOH . Z 4 HOH E 10 348 49 HOH HOH . Z 4 HOH E 11 349 60 HOH HOH . Z 4 HOH E 12 350 65 HOH HOH . Z 4 HOH E 13 351 75 HOH HOH . Z 4 HOH E 14 352 88 HOH HOH . Z 4 HOH E 15 353 92 HOH HOH . Z 4 HOH E 16 354 97 HOH HOH . Z 4 HOH E 17 355 102 HOH HOH . Z 4 HOH E 18 356 103 HOH HOH . Z 4 HOH E 19 357 108 HOH HOH . Z 4 HOH E 20 358 111 HOH HOH . Z 4 HOH E 21 359 125 HOH HOH . Z 4 HOH E 22 360 133 HOH HOH . Z 4 HOH E 23 361 206 HOH HOH . Z 4 HOH E 24 362 217 HOH HOH . Z 4 HOH E 25 363 227 HOH HOH . Z 4 HOH E 26 364 247 HOH HOH . Z 4 HOH E 27 365 250 HOH HOH . Z 4 HOH E 28 366 254 HOH HOH . Z 4 HOH E 29 367 256 HOH HOH . Z 4 HOH E 30 368 272 HOH HOH . Z 4 HOH E 31 369 273 HOH HOH . Z 4 HOH E 32 370 275 HOH HOH . Z 4 HOH E 33 371 280 HOH HOH . AA 4 HOH F 1 343 10 HOH HOH . AA 4 HOH F 2 344 26 HOH HOH . AA 4 HOH F 3 345 51 HOH HOH . AA 4 HOH F 4 346 58 HOH HOH . AA 4 HOH F 5 347 83 HOH HOH . AA 4 HOH F 6 348 93 HOH HOH . AA 4 HOH F 7 349 96 HOH HOH . AA 4 HOH F 8 350 107 HOH HOH . AA 4 HOH F 9 351 113 HOH HOH . AA 4 HOH F 10 352 119 HOH HOH . AA 4 HOH F 11 353 136 HOH HOH . AA 4 HOH F 12 354 140 HOH HOH . AA 4 HOH F 13 355 221 HOH HOH . AA 4 HOH F 14 356 222 HOH HOH . AA 4 HOH F 15 357 240 HOH HOH . AA 4 HOH F 16 358 261 HOH HOH . AA 4 HOH F 17 359 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . G 2 -72.037 23.616 49.607 1 19.7 ? PA NAP 338 A 1 HETATM 2 O O1A NAP . . . G 2 -71.109 23.624 48.471 1 19.75 ? O1A NAP 338 A 1 HETATM 3 O O2A NAP . . . G 2 -73.023 24.704 49.534 1 19.95 ? O2A NAP 338 A 1 HETATM 4 O O5B NAP . . . G 2 -71.345 23.51 51.056 1 20.01 ? O5B NAP 338 A 1 HETATM 5 C C5B NAP . . . G 2 -70.269 22.638 51.292 1 20.33 ? C5B NAP 338 A 1 HETATM 6 C C4B NAP . . . G 2 -69.313 23.324 52.267 1 20.93 ? C4B NAP 338 A 1 HETATM 7 O O4B NAP . . . G 2 -68.198 22.474 52.452 1 21.07 ? O4B NAP 338 A 1 HETATM 8 C C3B NAP . . . G 2 -68.729 24.626 51.727 1 21.85 ? C3B NAP 338 A 1 HETATM 9 O O3B NAP . . . G 2 -69.396 25.814 52.114 1 23.14 ? O3B NAP 338 A 1 HETATM 10 C C2B NAP . . . G 2 -67.295 24.61 52.229 1 22.09 ? C2B NAP 338 A 1 HETATM 11 O O2B NAP . . . G 2 -67.095 25.685 53.131 1 24.4 ? O2B NAP 338 A 1 HETATM 12 C C1B NAP . . . G 2 -67.025 23.212 52.797 1 20.26 ? C1B NAP 338 A 1 HETATM 13 N N9A NAP . . . G 2 -65.858 22.457 52.25 1 19.46 ? N9A NAP 338 A 1 HETATM 14 C C8A NAP . . . G 2 -65.528 22.271 50.911 1 19.02 ? C8A NAP 338 A 1 HETATM 15 N N7A NAP . . . G 2 -64.424 21.496 50.785 1 17.96 ? N7A NAP 338 A 1 HETATM 16 C C5A NAP . . . G 2 -64.03 21.169 52.037 1 18.26 ? C5A NAP 338 A 1 HETATM 17 C C6A NAP . . . G 2 -62.933 20.407 52.463 1 18.93 ? C6A NAP 338 A 1 HETATM 18 N N6A NAP . . . G 2 -62.094 19.871 51.557 1 18.28 ? N6A NAP 338 A 1 HETATM 19 N N1A NAP . . . G 2 -62.759 20.25 53.838 1 18.7 ? N1A NAP 338 A 1 HETATM 20 C C2A NAP . . . G 2 -63.674 20.849 54.706 1 18.53 ? C2A NAP 338 A 1 HETATM 21 N N3A NAP . . . G 2 -64.761 21.609 54.279 1 17.38 ? N3A NAP 338 A 1 HETATM 22 C C4A NAP . . . G 2 -64.916 21.762 52.957 1 17.87 ? C4A NAP 338 A 1 HETATM 23 O O3 NAP . . . G 2 -73.018 22.337 49.651 1 21.31 ? O3 NAP 338 A 1 HETATM 24 P PN NAP . . . G 2 -74.478 22.17 50.319 1 20.87 ? PN NAP 338 A 1 HETATM 25 O O1N NAP . . . G 2 -75.372 22.306 49.147 1 21.56 ? O1N NAP 338 A 1 HETATM 26 O O2N NAP . . . G 2 -74.633 23.036 51.53 1 20.51 ? O2N NAP 338 A 1 HETATM 27 O O5D NAP . . . G 2 -74.307 20.649 50.768 1 21.07 ? O5D NAP 338 A 1 HETATM 28 C C5D NAP . . . G 2 -73.778 20.406 52.052 1 21.74 ? C5D NAP 338 A 1 HETATM 29 C C4D NAP . . . G 2 -73.715 18.92 52.404 1 21.57 ? C4D NAP 338 A 1 HETATM 30 O O4D NAP . . . G 2 -74.94 18.29 52.152 1 20.59 ? O4D NAP 338 A 1 HETATM 31 C C3D NAP . . . G 2 -72.65 18.162 51.619 1 22.32 ? C3D NAP 338 A 1 HETATM 32 O O3D NAP . . . G 2 -72.213 17.115 52.479 1 22.56 ? O3D NAP 338 A 1 HETATM 33 C C2D NAP . . . G 2 -73.441 17.731 50.383 1 22.47 ? C2D NAP 338 A 1 HETATM 34 O O2D NAP . . . G 2 -72.967 16.66 49.563 1 24.09 ? O2D NAP 338 A 1 HETATM 35 C C1D NAP . . . G 2 -74.746 17.354 51.106 1 22.04 ? C1D NAP 338 A 1 HETATM 36 N N1N NAP . . . G 2 -75.951 17.214 50.23 1 22.1 ? N1N NAP 338 A 1 HETATM 37 C C2N NAP . . . G 2 -76.313 18.281 49.465 1 20.94 ? C2N NAP 338 A 1 HETATM 38 C C3N NAP . . . G 2 -77.402 18.236 48.634 1 20.44 ? C3N NAP 338 A 1 HETATM 39 C C7N NAP . . . G 2 -77.963 19.557 48.219 1 19.16 ? C7N NAP 338 A 1 HETATM 40 O O7N NAP . . . G 2 -79.17 19.502 47.493 1 20.72 ? O7N NAP 338 A 1 HETATM 41 N N7N NAP . . . G 2 -77.349 20.695 48.542 1 17.31 ? N7N NAP 338 A 1 HETATM 42 C C4N NAP . . . G 2 -78.143 17.057 48.583 1 21.93 ? C4N NAP 338 A 1 HETATM 43 C C5N NAP . . . G 2 -77.782 15.96 49.363 1 22.26 ? C5N NAP 338 A 1 HETATM 44 C C6N NAP . . . G 2 -76.67 16.043 50.19 1 22 ? C6N NAP 338 A 1 HETATM 45 P P2B NAP . . . G 2 -65.711 26.531 53.04 1 27.31 ? P2B NAP 338 A 1 HETATM 46 O O1X NAP . . . G 2 -65.236 26.803 51.617 1 26.21 ? O1X NAP 338 A 1 HETATM 47 O O2X NAP . . . G 2 -65.85 27.903 53.683 1 26.93 ? O2X NAP 338 A 1 HETATM 48 O O3X NAP . . . G 2 -64.748 25.617 53.789 1 27.54 ? O3X NAP 338 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #