data_3BXX # _model_server_result.job_id ild3fVMl8zOF4wOYzI0zzA _model_server_result.datetime_utc '2024-11-22 04:15:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":341}' # _entry.id 3BXX # _exptl.entry_id 3BXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BXX _cell.length_a 174.943 _cell.length_b 174.943 _cell.length_c 290.167 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,O,P,Q,V,Y 1 1 B,C,I,J,K,L,M,N,W,X 2 1 E,F,R,S,T,U,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 T N N ? 3 U N N # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QUE doub 357 n y C1 C6 QUE sing 358 n y C1 H1 QUE sing 359 n n C2 C3 QUE sing 360 n y C2 O30 QUE sing 361 n n C3 C4 QUE doub 362 n y C3 C9 QUE sing 363 n y C4 C5 QUE sing 364 n y C4 O12 QUE sing 365 n y C5 C6 QUE doub 366 n y C5 H5 QUE sing 367 n n C6 O29 QUE sing 368 n n C9 C10 QUE sing 369 n y C9 O13 QUE doub 370 n n C10 C11 QUE doub 371 n y C10 O27 QUE sing 372 n n C11 C14 QUE sing 373 n y C11 O12 QUE sing 374 n y C14 C15 QUE doub 375 n y C14 C19 QUE sing 376 n y C15 C16 QUE sing 377 n y C15 H15 QUE sing 378 n n C16 C17 QUE doub 379 n y C16 H16 QUE sing 380 n n C17 C18 QUE sing 381 n y C17 O24 QUE sing 382 n n C18 C19 QUE doub 383 n y C18 O23 QUE sing 384 n n C19 H19 QUE sing 385 n n O23 HO3 QUE sing 386 n n O24 HO4 QUE sing 387 n n O27 HO7 QUE sing 388 n n O29 HO9 QUE sing 389 n n O30 HO0 QUE sing 390 n n # _atom_sites.entry_id 3BXX _atom_sites.fract_transf_matrix[1][1] 0.005716 _atom_sites.fract_transf_matrix[1][2] 0.0033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAP A 1 338 335 NAP NAP . H 3 QUE A 1 342 342 QUE QUE . I 2 NAP B 1 338 335 NAP NAP . J 3 QUE B 1 341 341 QUE QUE . K 3 QUE B 1 342 342 QUE QUE . L 2 NAP C 1 338 335 NAP NAP . M 3 QUE C 1 341 341 QUE QUE . N 3 QUE C 1 342 342 QUE QUE . O 2 NAP D 1 338 335 NAP NAP . P 3 QUE D 1 341 341 QUE QUE . Q 3 QUE D 1 342 342 QUE QUE . R 2 NAP E 1 338 335 NAP NAP . S 2 NAP F 1 338 335 NAP NAP . T 3 QUE F 1 341 341 QUE QUE . U 3 QUE F 1 342 342 QUE QUE . V 4 HOH A 1 343 8 HOH HOH . V 4 HOH A 2 344 13 HOH HOH . V 4 HOH A 3 345 20 HOH HOH . V 4 HOH A 4 346 23 HOH HOH . V 4 HOH A 5 347 30 HOH HOH . V 4 HOH A 6 348 36 HOH HOH . V 4 HOH A 7 349 42 HOH HOH . V 4 HOH A 8 350 50 HOH HOH . V 4 HOH A 9 351 69 HOH HOH . V 4 HOH A 10 352 73 HOH HOH . V 4 HOH A 11 353 94 HOH HOH . V 4 HOH A 12 354 105 HOH HOH . V 4 HOH A 13 355 117 HOH HOH . V 4 HOH A 14 356 127 HOH HOH . V 4 HOH A 15 357 129 HOH HOH . V 4 HOH A 16 358 142 HOH HOH . V 4 HOH A 17 359 236 HOH HOH . V 4 HOH A 18 360 253 HOH HOH . V 4 HOH A 19 361 258 HOH HOH . W 4 HOH B 1 343 5 HOH HOH . W 4 HOH B 2 344 14 HOH HOH . W 4 HOH B 3 345 21 HOH HOH . W 4 HOH B 4 346 31 HOH HOH . W 4 HOH B 5 347 38 HOH HOH . W 4 HOH B 6 348 46 HOH HOH . W 4 HOH B 7 349 48 HOH HOH . W 4 HOH B 8 350 61 HOH HOH . W 4 HOH B 9 351 62 HOH HOH . W 4 HOH B 10 352 84 HOH HOH . W 4 HOH B 11 353 85 HOH HOH . W 4 HOH B 12 354 86 HOH HOH . W 4 HOH B 13 355 112 HOH HOH . W 4 HOH B 14 356 207 HOH HOH . W 4 HOH B 15 357 252 HOH HOH . X 4 HOH C 1 343 7 HOH HOH . X 4 HOH C 2 344 18 HOH HOH . X 4 HOH C 3 345 37 HOH HOH . X 4 HOH C 4 346 39 HOH HOH . X 4 HOH C 5 347 41 HOH HOH . X 4 HOH C 6 348 43 HOH HOH . X 4 HOH C 7 349 45 HOH HOH . X 4 HOH C 8 350 80 HOH HOH . X 4 HOH C 9 351 90 HOH HOH . X 4 HOH C 10 352 91 HOH HOH . X 4 HOH C 11 353 120 HOH HOH . X 4 HOH C 12 354 130 HOH HOH . X 4 HOH C 13 355 205 HOH HOH . X 4 HOH C 14 356 238 HOH HOH . X 4 HOH C 15 357 242 HOH HOH . X 4 HOH C 16 358 251 HOH HOH . Y 4 HOH D 1 343 6 HOH HOH . Y 4 HOH D 2 344 11 HOH HOH . Y 4 HOH D 3 345 12 HOH HOH . Y 4 HOH D 4 346 15 HOH HOH . Y 4 HOH D 5 347 22 HOH HOH . Y 4 HOH D 6 348 29 HOH HOH . Y 4 HOH D 7 349 32 HOH HOH . Y 4 HOH D 8 350 34 HOH HOH . Y 4 HOH D 9 351 47 HOH HOH . Y 4 HOH D 10 352 53 HOH HOH . Y 4 HOH D 11 353 54 HOH HOH . Y 4 HOH D 12 354 67 HOH HOH . Y 4 HOH D 13 355 70 HOH HOH . Y 4 HOH D 14 356 72 HOH HOH . Y 4 HOH D 15 357 79 HOH HOH . Y 4 HOH D 16 358 82 HOH HOH . Y 4 HOH D 17 359 99 HOH HOH . Y 4 HOH D 18 360 104 HOH HOH . Y 4 HOH D 19 361 106 HOH HOH . Y 4 HOH D 20 362 115 HOH HOH . Y 4 HOH D 21 363 121 HOH HOH . Y 4 HOH D 22 364 122 HOH HOH . Y 4 HOH D 23 365 143 HOH HOH . Y 4 HOH D 24 366 204 HOH HOH . Y 4 HOH D 25 367 216 HOH HOH . Y 4 HOH D 26 368 237 HOH HOH . Y 4 HOH D 27 369 255 HOH HOH . Y 4 HOH D 28 370 265 HOH HOH . Y 4 HOH D 29 371 271 HOH HOH . Z 4 HOH E 1 339 1 HOH HOH . Z 4 HOH E 2 340 2 HOH HOH . Z 4 HOH E 3 341 3 HOH HOH . Z 4 HOH E 4 342 9 HOH HOH . Z 4 HOH E 5 343 16 HOH HOH . Z 4 HOH E 6 344 17 HOH HOH . Z 4 HOH E 7 345 28 HOH HOH . Z 4 HOH E 8 346 33 HOH HOH . Z 4 HOH E 9 347 40 HOH HOH . Z 4 HOH E 10 348 49 HOH HOH . Z 4 HOH E 11 349 60 HOH HOH . Z 4 HOH E 12 350 65 HOH HOH . Z 4 HOH E 13 351 75 HOH HOH . Z 4 HOH E 14 352 88 HOH HOH . Z 4 HOH E 15 353 92 HOH HOH . Z 4 HOH E 16 354 97 HOH HOH . Z 4 HOH E 17 355 102 HOH HOH . Z 4 HOH E 18 356 103 HOH HOH . Z 4 HOH E 19 357 108 HOH HOH . Z 4 HOH E 20 358 111 HOH HOH . Z 4 HOH E 21 359 125 HOH HOH . Z 4 HOH E 22 360 133 HOH HOH . Z 4 HOH E 23 361 206 HOH HOH . Z 4 HOH E 24 362 217 HOH HOH . Z 4 HOH E 25 363 227 HOH HOH . Z 4 HOH E 26 364 247 HOH HOH . Z 4 HOH E 27 365 250 HOH HOH . Z 4 HOH E 28 366 254 HOH HOH . Z 4 HOH E 29 367 256 HOH HOH . Z 4 HOH E 30 368 272 HOH HOH . Z 4 HOH E 31 369 273 HOH HOH . Z 4 HOH E 32 370 275 HOH HOH . Z 4 HOH E 33 371 280 HOH HOH . AA 4 HOH F 1 343 10 HOH HOH . AA 4 HOH F 2 344 26 HOH HOH . AA 4 HOH F 3 345 51 HOH HOH . AA 4 HOH F 4 346 58 HOH HOH . AA 4 HOH F 5 347 83 HOH HOH . AA 4 HOH F 6 348 93 HOH HOH . AA 4 HOH F 7 349 96 HOH HOH . AA 4 HOH F 8 350 107 HOH HOH . AA 4 HOH F 9 351 113 HOH HOH . AA 4 HOH F 10 352 119 HOH HOH . AA 4 HOH F 11 353 136 HOH HOH . AA 4 HOH F 12 354 140 HOH HOH . AA 4 HOH F 13 355 221 HOH HOH . AA 4 HOH F 14 356 222 HOH HOH . AA 4 HOH F 15 357 240 HOH HOH . AA 4 HOH F 16 358 261 HOH HOH . AA 4 HOH F 17 359 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . . . J 3 -13.537 30.806 36.822 1 11.45 ? C1 QUE 341 B 1 HETATM 2 C C2 QUE . . . J 3 -13.584 31.79 37.778 1 11.32 ? C2 QUE 341 B 1 HETATM 3 C C3 QUE . . . J 3 -12.736 32.986 37.67 1 11.78 ? C3 QUE 341 B 1 HETATM 4 C C4 QUE . . . J 3 -11.854 33.104 36.506 1 12 ? C4 QUE 341 B 1 HETATM 5 C C5 QUE . . . J 3 -11.877 32.052 35.589 1 12.12 ? C5 QUE 341 B 1 HETATM 6 C C6 QUE . . . J 3 -12.687 30.934 35.753 1 11.92 ? C6 QUE 341 B 1 HETATM 7 C C9 QUE . . . J 3 -12.752 34.077 38.652 1 11.94 ? C9 QUE 341 B 1 HETATM 8 C C10 QUE . . . J 3 -11.867 35.231 38.401 1 11.64 ? C10 QUE 341 B 1 HETATM 9 C C11 QUE . . . J 3 -11.012 35.248 37.223 1 11.57 ? C11 QUE 341 B 1 HETATM 10 C C14 QUE . . . J 3 -10.081 36.354 36.889 1 12.03 ? C14 QUE 341 B 1 HETATM 11 C C15 QUE . . . J 3 -8.709 36.132 36.809 1 12.46 ? C15 QUE 341 B 1 HETATM 12 C C16 QUE . . . J 3 -7.819 37.159 36.49 1 12.06 ? C16 QUE 341 B 1 HETATM 13 C C17 QUE . . . J 3 -8.258 38.453 36.24 1 11.2 ? C17 QUE 341 B 1 HETATM 14 C C18 QUE . . . J 3 -9.709 38.68 36.34 1 11.12 ? C18 QUE 341 B 1 HETATM 15 C C19 QUE . . . J 3 -10.563 37.634 36.649 1 11.72 ? C19 QUE 341 B 1 HETATM 16 O O12 QUE . . . J 3 -11.052 34.207 36.372 1 11.71 ? O12 QUE 341 B 1 HETATM 17 O O13 QUE . . . J 3 -13.509 33.972 39.635 1 11.92 ? O13 QUE 341 B 1 HETATM 18 O O23 QUE . . . J 3 -10.238 39.899 36.107 1 11.95 ? O23 QUE 341 B 1 HETATM 19 O O24 QUE . . . J 3 -7.417 39.468 35.922 1 11.17 ? O24 QUE 341 B 1 HETATM 20 O O27 QUE . . . J 3 -11.814 36.285 39.241 1 12.17 ? O27 QUE 341 B 1 HETATM 21 O O29 QUE . . . J 3 -12.657 29.928 34.84 1 12.35 ? O29 QUE 341 B 1 HETATM 22 O O30 QUE . . . J 3 -14.417 31.684 38.828 1 11.36 ? O30 QUE 341 B 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 81 _model_server_stats.create_model_time_ms 180 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #