data_3BXX
#
_model_server_result.job_id            I7DyyLVai-YZo4fLzadgXA 
_model_server_result.datetime_utc      '2024-11-08 15:45:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bxx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":342}' 
#
_entry.id    3BXX 
#
_exptl.entry_id    3BXX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.236 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3,5,7,3',4'-PENTAHYDROXYFLAVONE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3BXX 
_cell.length_a            174.943 
_cell.length_b            174.943 
_cell.length_c            290.167 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BXX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,O,P,Q,V,Y 1 1 
B,C,I,J,K,L,M,N,W,X 2 1 
E,F,R,S,T,U,Z,AA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 P N N 
? 3 Q N N 
? 3 T N N 
? 3 U N N 
#
_chem_comp.formula           'C15 H10 O7' 
_chem_comp.formula_weight    302.236 
_chem_comp.id                QUE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3,5,7,3',4'-PENTAHYDROXYFLAVONE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     QUERCETIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 QUE doub 357 n y 
C1 C6 QUE sing 358 n y 
C1 H1 QUE sing 359 n n 
C2 C3 QUE sing 360 n y 
C2 O30 QUE sing 361 n n 
C3 C4 QUE doub 362 n y 
C3 C9 QUE sing 363 n y 
C4 C5 QUE sing 364 n y 
C4 O12 QUE sing 365 n y 
C5 C6 QUE doub 366 n y 
C5 H5 QUE sing 367 n n 
C6 O29 QUE sing 368 n n 
C9 C10 QUE sing 369 n y 
C9 O13 QUE doub 370 n n 
C10 C11 QUE doub 371 n y 
C10 O27 QUE sing 372 n n 
C11 C14 QUE sing 373 n y 
C11 O12 QUE sing 374 n y 
C14 C15 QUE doub 375 n y 
C14 C19 QUE sing 376 n y 
C15 C16 QUE sing 377 n y 
C15 H15 QUE sing 378 n n 
C16 C17 QUE doub 379 n y 
C16 H16 QUE sing 380 n n 
C17 C18 QUE sing 381 n y 
C17 O24 QUE sing 382 n n 
C18 C19 QUE doub 383 n y 
C18 O23 QUE sing 384 n n 
C19 H19 QUE sing 385 n n 
O23 HO3 QUE sing 386 n n 
O24 HO4 QUE sing 387 n n 
O27 HO7 QUE sing 388 n n 
O29 HO9 QUE sing 389 n n 
O30 HO0 QUE sing 390 n n 
#
_atom_sites.entry_id                     3BXX 
_atom_sites.fract_transf_matrix[1][1]    0.005716 
_atom_sites.fract_transf_matrix[1][2]    0.0033 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003446 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 338 335 NAP NAP . 
H 3 QUE A 1 342 342 QUE QUE . 
I 2 NAP B 1 338 335 NAP NAP . 
J 3 QUE B 1 341 341 QUE QUE . 
K 3 QUE B 1 342 342 QUE QUE . 
L 2 NAP C 1 338 335 NAP NAP . 
M 3 QUE C 1 341 341 QUE QUE . 
N 3 QUE C 1 342 342 QUE QUE . 
O 2 NAP D 1 338 335 NAP NAP . 
P 3 QUE D 1 341 341 QUE QUE . 
Q 3 QUE D 1 342 342 QUE QUE . 
R 2 NAP E 1 338 335 NAP NAP . 
S 2 NAP F 1 338 335 NAP NAP . 
T 3 QUE F 1 341 341 QUE QUE . 
U 3 QUE F 1 342 342 QUE QUE . 
V 4 HOH A 1 343 8 HOH HOH . 
V 4 HOH A 2 344 13 HOH HOH . 
V 4 HOH A 3 345 20 HOH HOH . 
V 4 HOH A 4 346 23 HOH HOH . 
V 4 HOH A 5 347 30 HOH HOH . 
V 4 HOH A 6 348 36 HOH HOH . 
V 4 HOH A 7 349 42 HOH HOH . 
V 4 HOH A 8 350 50 HOH HOH . 
V 4 HOH A 9 351 69 HOH HOH . 
V 4 HOH A 10 352 73 HOH HOH . 
V 4 HOH A 11 353 94 HOH HOH . 
V 4 HOH A 12 354 105 HOH HOH . 
V 4 HOH A 13 355 117 HOH HOH . 
V 4 HOH A 14 356 127 HOH HOH . 
V 4 HOH A 15 357 129 HOH HOH . 
V 4 HOH A 16 358 142 HOH HOH . 
V 4 HOH A 17 359 236 HOH HOH . 
V 4 HOH A 18 360 253 HOH HOH . 
V 4 HOH A 19 361 258 HOH HOH . 
W 4 HOH B 1 343 5 HOH HOH . 
W 4 HOH B 2 344 14 HOH HOH . 
W 4 HOH B 3 345 21 HOH HOH . 
W 4 HOH B 4 346 31 HOH HOH . 
W 4 HOH B 5 347 38 HOH HOH . 
W 4 HOH B 6 348 46 HOH HOH . 
W 4 HOH B 7 349 48 HOH HOH . 
W 4 HOH B 8 350 61 HOH HOH . 
W 4 HOH B 9 351 62 HOH HOH . 
W 4 HOH B 10 352 84 HOH HOH . 
W 4 HOH B 11 353 85 HOH HOH . 
W 4 HOH B 12 354 86 HOH HOH . 
W 4 HOH B 13 355 112 HOH HOH . 
W 4 HOH B 14 356 207 HOH HOH . 
W 4 HOH B 15 357 252 HOH HOH . 
X 4 HOH C 1 343 7 HOH HOH . 
X 4 HOH C 2 344 18 HOH HOH . 
X 4 HOH C 3 345 37 HOH HOH . 
X 4 HOH C 4 346 39 HOH HOH . 
X 4 HOH C 5 347 41 HOH HOH . 
X 4 HOH C 6 348 43 HOH HOH . 
X 4 HOH C 7 349 45 HOH HOH . 
X 4 HOH C 8 350 80 HOH HOH . 
X 4 HOH C 9 351 90 HOH HOH . 
X 4 HOH C 10 352 91 HOH HOH . 
X 4 HOH C 11 353 120 HOH HOH . 
X 4 HOH C 12 354 130 HOH HOH . 
X 4 HOH C 13 355 205 HOH HOH . 
X 4 HOH C 14 356 238 HOH HOH . 
X 4 HOH C 15 357 242 HOH HOH . 
X 4 HOH C 16 358 251 HOH HOH . 
Y 4 HOH D 1 343 6 HOH HOH . 
Y 4 HOH D 2 344 11 HOH HOH . 
Y 4 HOH D 3 345 12 HOH HOH . 
Y 4 HOH D 4 346 15 HOH HOH . 
Y 4 HOH D 5 347 22 HOH HOH . 
Y 4 HOH D 6 348 29 HOH HOH . 
Y 4 HOH D 7 349 32 HOH HOH . 
Y 4 HOH D 8 350 34 HOH HOH . 
Y 4 HOH D 9 351 47 HOH HOH . 
Y 4 HOH D 10 352 53 HOH HOH . 
Y 4 HOH D 11 353 54 HOH HOH . 
Y 4 HOH D 12 354 67 HOH HOH . 
Y 4 HOH D 13 355 70 HOH HOH . 
Y 4 HOH D 14 356 72 HOH HOH . 
Y 4 HOH D 15 357 79 HOH HOH . 
Y 4 HOH D 16 358 82 HOH HOH . 
Y 4 HOH D 17 359 99 HOH HOH . 
Y 4 HOH D 18 360 104 HOH HOH . 
Y 4 HOH D 19 361 106 HOH HOH . 
Y 4 HOH D 20 362 115 HOH HOH . 
Y 4 HOH D 21 363 121 HOH HOH . 
Y 4 HOH D 22 364 122 HOH HOH . 
Y 4 HOH D 23 365 143 HOH HOH . 
Y 4 HOH D 24 366 204 HOH HOH . 
Y 4 HOH D 25 367 216 HOH HOH . 
Y 4 HOH D 26 368 237 HOH HOH . 
Y 4 HOH D 27 369 255 HOH HOH . 
Y 4 HOH D 28 370 265 HOH HOH . 
Y 4 HOH D 29 371 271 HOH HOH . 
Z 4 HOH E 1 339 1 HOH HOH . 
Z 4 HOH E 2 340 2 HOH HOH . 
Z 4 HOH E 3 341 3 HOH HOH . 
Z 4 HOH E 4 342 9 HOH HOH . 
Z 4 HOH E 5 343 16 HOH HOH . 
Z 4 HOH E 6 344 17 HOH HOH . 
Z 4 HOH E 7 345 28 HOH HOH . 
Z 4 HOH E 8 346 33 HOH HOH . 
Z 4 HOH E 9 347 40 HOH HOH . 
Z 4 HOH E 10 348 49 HOH HOH . 
Z 4 HOH E 11 349 60 HOH HOH . 
Z 4 HOH E 12 350 65 HOH HOH . 
Z 4 HOH E 13 351 75 HOH HOH . 
Z 4 HOH E 14 352 88 HOH HOH . 
Z 4 HOH E 15 353 92 HOH HOH . 
Z 4 HOH E 16 354 97 HOH HOH . 
Z 4 HOH E 17 355 102 HOH HOH . 
Z 4 HOH E 18 356 103 HOH HOH . 
Z 4 HOH E 19 357 108 HOH HOH . 
Z 4 HOH E 20 358 111 HOH HOH . 
Z 4 HOH E 21 359 125 HOH HOH . 
Z 4 HOH E 22 360 133 HOH HOH . 
Z 4 HOH E 23 361 206 HOH HOH . 
Z 4 HOH E 24 362 217 HOH HOH . 
Z 4 HOH E 25 363 227 HOH HOH . 
Z 4 HOH E 26 364 247 HOH HOH . 
Z 4 HOH E 27 365 250 HOH HOH . 
Z 4 HOH E 28 366 254 HOH HOH . 
Z 4 HOH E 29 367 256 HOH HOH . 
Z 4 HOH E 30 368 272 HOH HOH . 
Z 4 HOH E 31 369 273 HOH HOH . 
Z 4 HOH E 32 370 275 HOH HOH . 
Z 4 HOH E 33 371 280 HOH HOH . 
AA 4 HOH F 1 343 10 HOH HOH . 
AA 4 HOH F 2 344 26 HOH HOH . 
AA 4 HOH F 3 345 51 HOH HOH . 
AA 4 HOH F 4 346 58 HOH HOH . 
AA 4 HOH F 5 347 83 HOH HOH . 
AA 4 HOH F 6 348 93 HOH HOH . 
AA 4 HOH F 7 349 96 HOH HOH . 
AA 4 HOH F 8 350 107 HOH HOH . 
AA 4 HOH F 9 351 113 HOH HOH . 
AA 4 HOH F 10 352 119 HOH HOH . 
AA 4 HOH F 11 353 136 HOH HOH . 
AA 4 HOH F 12 354 140 HOH HOH . 
AA 4 HOH F 13 355 221 HOH HOH . 
AA 4 HOH F 14 356 222 HOH HOH . 
AA 4 HOH F 15 357 240 HOH HOH . 
AA 4 HOH F 16 358 261 HOH HOH . 
AA 4 HOH F 17 359 270 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QUE . . . Q 3 -72.082 20.261 28.03 1 24.3 ? C1 QUE 342 D 1 
HETATM 2 C C2 QUE . . . Q 3 -71.195 20.316 29.115 1 24.89 ? C2 QUE 342 D 1 
HETATM 3 C C3 QUE . . . Q 3 -69.707 20.172 28.868 1 24.82 ? C3 QUE 342 D 1 
HETATM 4 C C4 QUE . . . Q 3 -69.266 19.968 27.447 1 24.86 ? C4 QUE 342 D 1 
HETATM 5 C C5 QUE . . . Q 3 -70.245 19.93 26.433 1 24.58 ? C5 QUE 342 D 1 
HETATM 6 C C6 QUE . . . Q 3 -71.608 20.082 26.735 1 24.19 ? C6 QUE 342 D 1 
HETATM 7 C C9 QUE . . . Q 3 -68.621 20.215 29.902 1 24.36 ? C9 QUE 342 D 1 
HETATM 8 C C10 QUE . . . Q 3 -67.204 20.057 29.516 1 24.27 ? C10 QUE 342 D 1 
HETATM 9 C C11 QUE . . . Q 3 -66.869 19.847 28.075 1 24.53 ? C11 QUE 342 D 1 
HETATM 10 C C14 QUE . . . Q 3 -65.482 19.698 27.515 1 24.45 ? C14 QUE 342 D 1 
HETATM 11 C C15 QUE . . . Q 3 -64.404 20.288 28.166 1 24.81 ? C15 QUE 342 D 1 
HETATM 12 C C16 QUE . . . Q 3 -63.119 20.211 27.647 1 25.2 ? C16 QUE 342 D 1 
HETATM 13 C C17 QUE . . . Q 3 -62.861 19.545 26.448 1 24.97 ? C17 QUE 342 D 1 
HETATM 14 C C18 QUE . . . Q 3 -63.974 18.92 25.728 1 24.69 ? C18 QUE 342 D 1 
HETATM 15 C C19 QUE . . . Q 3 -65.24 19.045 26.303 1 24.29 ? C19 QUE 342 D 1 
HETATM 16 O O12 QUE . . . Q 3 -67.919 19.836 27.168 1 24.57 ? O12 QUE 342 D 1 
HETATM 17 O O13 QUE . . . Q 3 -68.787 20.391 31.123 1 24.38 ? O13 QUE 342 D 1 
HETATM 18 O O23 QUE . . . Q 3 -63.621 18.267 24.572 1 24.9 ? O23 QUE 342 D 1 
HETATM 19 O O24 QUE . . . Q 3 -61.638 19.402 25.874 1 25.15 ? O24 QUE 342 D 1 
HETATM 20 O O27 QUE . . . Q 3 -66.348 20.093 30.565 1 24.09 ? O27 QUE 342 D 1 
HETATM 21 O O29 QUE . . . Q 3 -72.53 20.04 25.751 1 24.1 ? O29 QUE 342 D 1 
HETATM 22 O O30 QUE . . . Q 3 -71.713 20.508 30.372 1 25.05 ? O30 QUE 342 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           22 
#