data_3BY0 # _model_server_result.job_id fI5f2-hU7W0_QAK0vQdZqw _model_server_result.datetime_utc '2024-11-24 23:55:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3by0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":191}' # _entry.id 3BY0 # _exptl.entry_id 3BY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.197 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BY0 _cell.length_a 114.358 _cell.length_b 114.358 _cell.length_c 119.042 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,S 1 1 B,J,K,T 2 1 C,L,M,N,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 F O4 DBS . A DBS 191 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 F O1 DBS . A DBS 191 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 G O6 DBH . A DBH 192 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 H O3 DBH . A DBH 193 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? metalc ? metalc5 K O3 DBH . B DBH 201 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc6 K O6 DBH . B DBH 201 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc7 N O1 DBS . C DBS 301 1_555 L FE FE . C FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 N O4 DBS . C DBS 301 1_555 L FE FE . C FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 O O1 DBS . C DBS 302 1_555 L FE FE . C FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc10 O O4 DBS . C DBS 302 1_555 L FE FE . C FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 P O3 DBH . C DBH 303 1_555 L FE FE . C FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc12 P O6 DBH . C DBH 303 1_555 L FE FE . C FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'C10 H11 N O6' _chem_comp.formula_weight 241.197 _chem_comp.id DBS _chem_comp.mon_nstd_flag n _chem_comp.name '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 2,3,-DIHYDROXYBENZOYLSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 DBS sing 100 n n O4 HO4 DBS sing 101 n n C4 C7 DBS doub 102 n y C4 C1 DBS sing 103 n y C7 C10 DBS sing 104 n y C7 HC7 DBS sing 105 n n C1 O1 DBS sing 106 n n C1 C16 DBS doub 107 n y O1 HO1 DBS sing 108 n n C16 C13 DBS sing 109 n y C16 C19 DBS sing 110 n n C13 C10 DBS doub 111 n y C13 HC13 DBS sing 112 n n C10 HC10 DBS sing 113 n n C19 O7 DBS doub 114 n n C19 N1 DBS sing 115 n n N1 C22 DBS sing 116 n n N1 HN1 DBS sing 117 n n C22 C28 DBS sing 118 n n C22 C25 DBS sing 119 n n C22 HC22 DBS sing 120 n n C28 O13 DBS sing 121 n n C28 H281 DBS sing 122 n n C28 H282 DBS sing 123 n n O13 HO13 DBS sing 124 n n C25 O10 DBS doub 125 n n C25 O15 DBS sing 126 n n O15 HO15 DBS sing 127 n n # _atom_sites.entry_id 3BY0 _atom_sites.fract_transf_matrix[1][1] 0.008744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 401 401 FE FE . E 3 SO4 A 1 531 531 SO4 SO4 . F 4 DBS A 1 191 191 DBS DBS . G 5 DBH A 1 192 192 DBH DBH . H 5 DBH A 1 193 193 DBH DBH . I 6 GOL A 1 601 601 GOL GOL . J 2 FE B 1 402 402 FE FE . K 5 DBH B 1 201 201 DBH DBH . L 2 FE C 1 403 403 FE FE . M 3 SO4 C 1 532 532 SO4 SO4 . N 4 DBS C 1 301 301 DBS DBS . O 4 DBS C 1 302 302 DBS DBS . P 5 DBH C 1 303 303 DBH DBH . Q 6 GOL C 1 602 602 GOL GOL . R 6 GOL C 1 603 603 GOL GOL . S 7 HOH A 1 602 703 HOH HOH . S 7 HOH A 2 603 705 HOH HOH . S 7 HOH A 3 604 709 HOH HOH . S 7 HOH A 4 605 714 HOH HOH . S 7 HOH A 5 606 715 HOH HOH . S 7 HOH A 6 607 720 HOH HOH . S 7 HOH A 7 608 721 HOH HOH . S 7 HOH A 8 609 727 HOH HOH . S 7 HOH A 9 610 729 HOH HOH . S 7 HOH A 10 611 730 HOH HOH . S 7 HOH A 11 612 732 HOH HOH . S 7 HOH A 12 613 745 HOH HOH . S 7 HOH A 13 614 747 HOH HOH . S 7 HOH A 14 615 750 HOH HOH . S 7 HOH A 15 616 751 HOH HOH . S 7 HOH A 16 617 754 HOH HOH . S 7 HOH A 17 618 757 HOH HOH . S 7 HOH A 18 619 759 HOH HOH . S 7 HOH A 19 620 762 HOH HOH . S 7 HOH A 20 621 765 HOH HOH . S 7 HOH A 21 622 771 HOH HOH . S 7 HOH A 22 623 772 HOH HOH . S 7 HOH A 23 624 773 HOH HOH . S 7 HOH A 24 625 774 HOH HOH . S 7 HOH A 25 626 777 HOH HOH . S 7 HOH A 26 627 779 HOH HOH . S 7 HOH A 27 628 783 HOH HOH . S 7 HOH A 28 629 784 HOH HOH . S 7 HOH A 29 630 786 HOH HOH . S 7 HOH A 30 631 787 HOH HOH . S 7 HOH A 31 632 788 HOH HOH . T 7 HOH B 1 403 734 HOH HOH . U 7 HOH C 1 604 701 HOH HOH . U 7 HOH C 2 605 702 HOH HOH . U 7 HOH C 3 606 704 HOH HOH . U 7 HOH C 4 607 706 HOH HOH . U 7 HOH C 5 608 707 HOH HOH . U 7 HOH C 6 609 708 HOH HOH . U 7 HOH C 7 610 710 HOH HOH . U 7 HOH C 8 611 711 HOH HOH . U 7 HOH C 9 612 712 HOH HOH . U 7 HOH C 10 613 716 HOH HOH . U 7 HOH C 11 614 717 HOH HOH . U 7 HOH C 12 615 718 HOH HOH . U 7 HOH C 13 616 719 HOH HOH . U 7 HOH C 14 617 722 HOH HOH . U 7 HOH C 15 618 723 HOH HOH . U 7 HOH C 16 619 724 HOH HOH . U 7 HOH C 17 620 725 HOH HOH . U 7 HOH C 18 621 726 HOH HOH . U 7 HOH C 19 622 728 HOH HOH . U 7 HOH C 20 623 731 HOH HOH . U 7 HOH C 21 624 733 HOH HOH . U 7 HOH C 22 625 735 HOH HOH . U 7 HOH C 23 626 738 HOH HOH . U 7 HOH C 24 627 739 HOH HOH . U 7 HOH C 25 628 740 HOH HOH . U 7 HOH C 26 629 741 HOH HOH . U 7 HOH C 27 630 742 HOH HOH . U 7 HOH C 28 631 743 HOH HOH . U 7 HOH C 29 632 744 HOH HOH . U 7 HOH C 30 633 746 HOH HOH . U 7 HOH C 31 634 748 HOH HOH . U 7 HOH C 32 635 749 HOH HOH . U 7 HOH C 33 636 752 HOH HOH . U 7 HOH C 34 637 755 HOH HOH . U 7 HOH C 35 638 756 HOH HOH . U 7 HOH C 36 639 758 HOH HOH . U 7 HOH C 37 640 761 HOH HOH . U 7 HOH C 38 641 763 HOH HOH . U 7 HOH C 39 642 764 HOH HOH . U 7 HOH C 40 643 766 HOH HOH . U 7 HOH C 41 644 767 HOH HOH . U 7 HOH C 42 645 769 HOH HOH . U 7 HOH C 43 646 770 HOH HOH . U 7 HOH C 44 647 775 HOH HOH . U 7 HOH C 45 648 776 HOH HOH . U 7 HOH C 46 649 781 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 DBS . . . F 4 26.795 77.375 63.235 1 52.18 ? O4 DBS 191 A 1 HETATM 2 C C4 DBS . . . F 4 26.863 78.658 62.78 1 52.86 ? C4 DBS 191 A 1 HETATM 3 C C7 DBS . . . F 4 25.97 79.097 61.811 1 52.74 ? C7 DBS 191 A 1 HETATM 4 C C1 DBS . . . F 4 27.827 79.519 63.284 1 53.3 ? C1 DBS 191 A 1 HETATM 5 O O1 DBS . . . F 4 28.691 79.062 64.233 1 53.15 ? O1 DBS 191 A 1 HETATM 6 C C16 DBS . . . F 4 27.906 80.83 62.825 1 54.17 ? C16 DBS 191 A 1 HETATM 7 C C13 DBS . . . F 4 27.009 81.269 61.854 1 53.51 ? C13 DBS 191 A 1 HETATM 8 C C10 DBS . . . F 4 26.044 80.405 61.346 1 53.14 ? C10 DBS 191 A 1 HETATM 9 C C19 DBS . . . F 4 28.942 81.778 63.368 1 55.81 ? C19 DBS 191 A 1 HETATM 10 O O7 DBS . . . F 4 29.394 82.644 62.635 1 56.13 ? O7 DBS 191 A 1 HETATM 11 N N1 DBS . . . F 4 29.325 81.647 64.641 1 57.29 ? N1 DBS 191 A 1 HETATM 12 C C22 DBS . . . F 4 30.325 82.492 65.284 1 58.05 ? C22 DBS 191 A 1 HETATM 13 C C28 DBS . . . F 4 29.758 82.809 66.666 1 57.97 ? C28 DBS 191 A 1 HETATM 14 O O13 DBS . . . F 4 28.579 83.613 66.536 1 58.08 ? O13 DBS 191 A 1 HETATM 15 C C25 DBS . . . F 4 31.644 81.775 65.385 1 58.67 ? C25 DBS 191 A 1 HETATM 16 O O10 DBS . . . F 4 32.005 81.051 64.427 1 59.05 ? O10 DBS 191 A 1 HETATM 17 O O15 DBS . . . F 4 32.339 81.919 66.416 1 59.36 ? O15 DBS 191 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #