data_3BY4 # _model_server_result.job_id hH8bA04-cD_6ixXcb2UTzg _model_server_result.datetime_utc '2024-11-22 09:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3by4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":77}' # _entry.id 3BY4 # _exptl.entry_id 3BY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-AMINOPROPANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BY4 _cell.length_a 46.304 _cell.length_b 73.215 _cell.length_c 88.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 75 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 75 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id ND _struct_conn.ptnr2_label_comp_id 3CN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id 3CN _struct_conn.ptnr2_auth_seq_id 77 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.337 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H9 N' _chem_comp.formula_weight 59.11 _chem_comp.id 3CN _chem_comp.mon_nstd_flag . _chem_comp.name 3-AMINOPROPANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BY4 _atom_sites.fract_transf_matrix[1][1] 0.021596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3CN B 1 77 76 3CN 3CN . D 4 HOH A 1 302 1 HOH HOH . D 4 HOH A 2 303 4 HOH HOH . D 4 HOH A 3 304 5 HOH HOH . D 4 HOH A 4 305 6 HOH HOH . D 4 HOH A 5 306 8 HOH HOH . D 4 HOH A 6 307 9 HOH HOH . D 4 HOH A 7 308 12 HOH HOH . D 4 HOH A 8 309 14 HOH HOH . D 4 HOH A 9 310 15 HOH HOH . D 4 HOH A 10 311 16 HOH HOH . D 4 HOH A 11 312 17 HOH HOH . D 4 HOH A 12 313 18 HOH HOH . D 4 HOH A 13 314 19 HOH HOH . D 4 HOH A 14 315 20 HOH HOH . D 4 HOH A 15 316 21 HOH HOH . D 4 HOH A 16 317 22 HOH HOH . D 4 HOH A 17 318 23 HOH HOH . D 4 HOH A 18 319 24 HOH HOH . D 4 HOH A 19 320 25 HOH HOH . D 4 HOH A 20 321 26 HOH HOH . D 4 HOH A 21 322 27 HOH HOH . D 4 HOH A 22 323 28 HOH HOH . D 4 HOH A 23 324 29 HOH HOH . D 4 HOH A 24 325 30 HOH HOH . D 4 HOH A 25 326 32 HOH HOH . D 4 HOH A 26 327 33 HOH HOH . D 4 HOH A 27 328 34 HOH HOH . D 4 HOH A 28 329 35 HOH HOH . D 4 HOH A 29 330 36 HOH HOH . D 4 HOH A 30 331 37 HOH HOH . D 4 HOH A 31 332 38 HOH HOH . D 4 HOH A 32 333 39 HOH HOH . D 4 HOH A 33 334 40 HOH HOH . D 4 HOH A 34 335 41 HOH HOH . D 4 HOH A 35 336 42 HOH HOH . D 4 HOH A 36 337 43 HOH HOH . D 4 HOH A 37 338 44 HOH HOH . D 4 HOH A 38 339 45 HOH HOH . D 4 HOH A 39 340 46 HOH HOH . D 4 HOH A 40 341 47 HOH HOH . D 4 HOH A 41 342 48 HOH HOH . D 4 HOH A 42 343 49 HOH HOH . D 4 HOH A 43 344 51 HOH HOH . D 4 HOH A 44 345 52 HOH HOH . D 4 HOH A 45 346 53 HOH HOH . D 4 HOH A 46 347 54 HOH HOH . D 4 HOH A 47 348 55 HOH HOH . D 4 HOH A 48 349 56 HOH HOH . D 4 HOH A 49 350 57 HOH HOH . D 4 HOH A 50 351 59 HOH HOH . D 4 HOH A 51 352 60 HOH HOH . D 4 HOH A 52 353 61 HOH HOH . D 4 HOH A 53 354 62 HOH HOH . D 4 HOH A 54 355 64 HOH HOH . D 4 HOH A 55 356 66 HOH HOH . D 4 HOH A 56 357 67 HOH HOH . D 4 HOH A 57 358 68 HOH HOH . D 4 HOH A 58 359 69 HOH HOH . D 4 HOH A 59 360 71 HOH HOH . D 4 HOH A 60 361 72 HOH HOH . D 4 HOH A 61 362 73 HOH HOH . D 4 HOH A 62 363 74 HOH HOH . D 4 HOH A 63 364 76 HOH HOH . D 4 HOH A 64 365 78 HOH HOH . D 4 HOH A 65 366 79 HOH HOH . D 4 HOH A 66 367 81 HOH HOH . D 4 HOH A 67 368 82 HOH HOH . D 4 HOH A 68 369 84 HOH HOH . D 4 HOH A 69 370 86 HOH HOH . D 4 HOH A 70 371 88 HOH HOH . D 4 HOH A 71 372 89 HOH HOH . D 4 HOH A 72 373 90 HOH HOH . D 4 HOH A 73 374 91 HOH HOH . D 4 HOH A 74 375 92 HOH HOH . D 4 HOH A 75 376 93 HOH HOH . D 4 HOH A 76 377 94 HOH HOH . D 4 HOH A 77 378 95 HOH HOH . D 4 HOH A 78 379 96 HOH HOH . D 4 HOH A 79 380 97 HOH HOH . D 4 HOH A 80 381 98 HOH HOH . D 4 HOH A 81 382 99 HOH HOH . D 4 HOH A 82 383 101 HOH HOH . D 4 HOH A 83 384 102 HOH HOH . D 4 HOH A 84 385 103 HOH HOH . D 4 HOH A 85 386 104 HOH HOH . D 4 HOH A 86 387 105 HOH HOH . D 4 HOH A 87 388 108 HOH HOH . D 4 HOH A 88 389 109 HOH HOH . D 4 HOH A 89 390 112 HOH HOH . D 4 HOH A 90 391 113 HOH HOH . D 4 HOH A 91 392 115 HOH HOH . D 4 HOH A 92 393 116 HOH HOH . D 4 HOH A 93 394 117 HOH HOH . D 4 HOH A 94 395 118 HOH HOH . D 4 HOH A 95 396 119 HOH HOH . D 4 HOH A 96 397 120 HOH HOH . D 4 HOH A 97 398 122 HOH HOH . D 4 HOH A 98 399 123 HOH HOH . D 4 HOH A 99 400 124 HOH HOH . D 4 HOH A 100 401 125 HOH HOH . D 4 HOH A 101 402 126 HOH HOH . D 4 HOH A 102 403 127 HOH HOH . D 4 HOH A 103 404 128 HOH HOH . D 4 HOH A 104 405 129 HOH HOH . D 4 HOH A 105 406 130 HOH HOH . D 4 HOH A 106 407 132 HOH HOH . D 4 HOH A 107 408 133 HOH HOH . D 4 HOH A 108 409 135 HOH HOH . D 4 HOH A 109 410 136 HOH HOH . D 4 HOH A 110 411 137 HOH HOH . D 4 HOH A 111 412 140 HOH HOH . D 4 HOH A 112 413 141 HOH HOH . D 4 HOH A 113 414 142 HOH HOH . D 4 HOH A 114 415 144 HOH HOH . D 4 HOH A 115 416 145 HOH HOH . D 4 HOH A 116 417 146 HOH HOH . D 4 HOH A 117 418 147 HOH HOH . D 4 HOH A 118 419 148 HOH HOH . D 4 HOH A 119 420 150 HOH HOH . D 4 HOH A 120 421 151 HOH HOH . D 4 HOH A 121 422 152 HOH HOH . D 4 HOH A 122 423 153 HOH HOH . D 4 HOH A 123 424 157 HOH HOH . D 4 HOH A 124 425 158 HOH HOH . E 4 HOH B 1 78 2 HOH HOH . E 4 HOH B 2 79 3 HOH HOH . E 4 HOH B 3 80 7 HOH HOH . E 4 HOH B 4 81 10 HOH HOH . E 4 HOH B 5 82 11 HOH HOH . E 4 HOH B 6 83 13 HOH HOH . E 4 HOH B 7 84 31 HOH HOH . E 4 HOH B 8 85 50 HOH HOH . E 4 HOH B 9 86 58 HOH HOH . E 4 HOH B 10 87 63 HOH HOH . E 4 HOH B 11 88 65 HOH HOH . E 4 HOH B 12 89 75 HOH HOH . E 4 HOH B 13 90 77 HOH HOH . E 4 HOH B 14 91 85 HOH HOH . E 4 HOH B 15 92 107 HOH HOH . E 4 HOH B 16 93 114 HOH HOH . E 4 HOH B 17 94 121 HOH HOH . E 4 HOH B 18 95 138 HOH HOH . E 4 HOH B 19 96 139 HOH HOH . E 4 HOH B 20 97 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 3CN . . . C 3 38.532 24.032 9.876 1 23.86 ? CA 3CN 77 B 1 HETATM 2 C CB 3CN . . . C 3 37.092 24.028 10.334 1 22.05 ? CB 3CN 77 B 1 HETATM 3 C CC 3CN . . . C 3 36.905 23.018 11.459 1 18.88 ? CC 3CN 77 B 1 HETATM 4 N ND 3CN . . . C 3 37.677 23.441 12.611 1 18.09 ? ND 3CN 77 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #