data_3BY8 # _model_server_result.job_id ytTd5fhWpXmR_mWg65_1-A _model_server_result.datetime_utc '2024-11-26 03:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3by8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3BY8 # _exptl.entry_id 3BY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BY8 _cell.length_a 86.111 _cell.length_b 86.111 _cell.length_c 35.207 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 181 n n C1 O1B LMR sing 182 n n C1 C2 LMR sing 183 n n C2 O2 LMR sing 184 n n C2 C3 LMR sing 185 n n C3 C4 LMR sing 186 n n C4 O4A LMR sing 187 n n C4 O4B LMR doub 188 n n C2 H2 LMR sing 189 n n O2 HO2 LMR sing 190 n n C3 H3 LMR sing 191 n n C3 H3A LMR sing 192 n n O1B H4 LMR sing 193 n n O4A H5 LMR sing 194 n n # _atom_sites.entry_id 3BY8 _atom_sites.fract_transf_matrix[1][1] 0.011613 _atom_sites.fract_transf_matrix[1][2] 0.006705 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMR A 1 1 1 LMR MLT . C 3 HOH A 1 182 1 HOH HOH . C 3 HOH A 2 183 2 HOH HOH . C 3 HOH A 3 184 3 HOH HOH . C 3 HOH A 4 185 4 HOH HOH . C 3 HOH A 5 186 5 HOH HOH . C 3 HOH A 6 187 6 HOH HOH . C 3 HOH A 7 188 7 HOH HOH . C 3 HOH A 8 189 8 HOH HOH . C 3 HOH A 9 190 9 HOH HOH . C 3 HOH A 10 191 10 HOH HOH . C 3 HOH A 11 192 11 HOH HOH . C 3 HOH A 12 193 12 HOH HOH . C 3 HOH A 13 194 13 HOH HOH . C 3 HOH A 14 195 14 HOH HOH . C 3 HOH A 15 196 15 HOH HOH . C 3 HOH A 16 197 16 HOH HOH . C 3 HOH A 17 198 17 HOH HOH . C 3 HOH A 18 199 18 HOH HOH . C 3 HOH A 19 200 19 HOH HOH . C 3 HOH A 20 201 20 HOH HOH . C 3 HOH A 21 202 21 HOH HOH . C 3 HOH A 22 203 22 HOH HOH . C 3 HOH A 23 204 23 HOH HOH . C 3 HOH A 24 205 24 HOH HOH . C 3 HOH A 25 206 25 HOH HOH . C 3 HOH A 26 207 26 HOH HOH . C 3 HOH A 27 208 27 HOH HOH . C 3 HOH A 28 209 28 HOH HOH . C 3 HOH A 29 210 29 HOH HOH . C 3 HOH A 30 211 30 HOH HOH . C 3 HOH A 31 212 31 HOH HOH . C 3 HOH A 32 213 32 HOH HOH . C 3 HOH A 33 214 33 HOH HOH . C 3 HOH A 34 215 34 HOH HOH . C 3 HOH A 35 216 35 HOH HOH . C 3 HOH A 36 217 36 HOH HOH . C 3 HOH A 37 218 37 HOH HOH . C 3 HOH A 38 219 38 HOH HOH . C 3 HOH A 39 220 39 HOH HOH . C 3 HOH A 40 221 40 HOH HOH . C 3 HOH A 41 222 41 HOH HOH . C 3 HOH A 42 223 42 HOH HOH . C 3 HOH A 43 224 43 HOH HOH . C 3 HOH A 44 225 44 HOH HOH . C 3 HOH A 45 226 45 HOH HOH . C 3 HOH A 46 227 46 HOH HOH . C 3 HOH A 47 228 47 HOH HOH . C 3 HOH A 48 229 48 HOH HOH . C 3 HOH A 49 230 49 HOH HOH . C 3 HOH A 50 231 50 HOH HOH . C 3 HOH A 51 232 51 HOH HOH . C 3 HOH A 52 233 52 HOH HOH . C 3 HOH A 53 234 53 HOH HOH . C 3 HOH A 54 235 54 HOH HOH . C 3 HOH A 55 236 55 HOH HOH . C 3 HOH A 56 237 56 HOH HOH . C 3 HOH A 57 238 57 HOH HOH . C 3 HOH A 58 239 58 HOH HOH . C 3 HOH A 59 240 59 HOH HOH . C 3 HOH A 60 241 60 HOH HOH . C 3 HOH A 61 242 61 HOH HOH . C 3 HOH A 62 243 62 HOH HOH . C 3 HOH A 63 244 63 HOH HOH . C 3 HOH A 64 245 64 HOH HOH . C 3 HOH A 65 246 65 HOH HOH . C 3 HOH A 66 247 66 HOH HOH . C 3 HOH A 67 248 67 HOH HOH . C 3 HOH A 68 249 68 HOH HOH . C 3 HOH A 69 250 69 HOH HOH . C 3 HOH A 70 251 70 HOH HOH . C 3 HOH A 71 252 71 HOH HOH . C 3 HOH A 72 253 72 HOH HOH . C 3 HOH A 73 254 73 HOH HOH . C 3 HOH A 74 255 74 HOH HOH . C 3 HOH A 75 256 75 HOH HOH . C 3 HOH A 76 257 76 HOH HOH . C 3 HOH A 77 258 77 HOH HOH . C 3 HOH A 78 259 78 HOH HOH . C 3 HOH A 79 260 79 HOH HOH . C 3 HOH A 80 261 80 HOH HOH . C 3 HOH A 81 262 81 HOH HOH . C 3 HOH A 82 263 82 HOH HOH . C 3 HOH A 83 264 83 HOH HOH . C 3 HOH A 84 265 84 HOH HOH . C 3 HOH A 85 266 85 HOH HOH . C 3 HOH A 86 267 86 HOH HOH . C 3 HOH A 87 268 87 HOH HOH . C 3 HOH A 88 269 88 HOH HOH . C 3 HOH A 89 270 89 HOH HOH . C 3 HOH A 90 271 90 HOH HOH . C 3 HOH A 91 272 91 HOH HOH . C 3 HOH A 92 273 92 HOH HOH . C 3 HOH A 93 274 93 HOH HOH . C 3 HOH A 94 275 94 HOH HOH . C 3 HOH A 95 276 95 HOH HOH . C 3 HOH A 96 277 96 HOH HOH . C 3 HOH A 97 278 97 HOH HOH . C 3 HOH A 98 279 98 HOH HOH . C 3 HOH A 99 280 99 HOH HOH . C 3 HOH A 100 281 100 HOH HOH . C 3 HOH A 101 282 101 HOH HOH . C 3 HOH A 102 283 102 HOH HOH . C 3 HOH A 103 284 103 HOH HOH . C 3 HOH A 104 285 104 HOH HOH . C 3 HOH A 105 286 105 HOH HOH . C 3 HOH A 106 287 106 HOH HOH . C 3 HOH A 107 288 107 HOH HOH . C 3 HOH A 108 289 108 HOH HOH . C 3 HOH A 109 290 109 HOH HOH . C 3 HOH A 110 291 110 HOH HOH . C 3 HOH A 111 292 111 HOH HOH . C 3 HOH A 112 293 112 HOH HOH . C 3 HOH A 113 294 113 HOH HOH . C 3 HOH A 114 295 114 HOH HOH . C 3 HOH A 115 296 115 HOH HOH . C 3 HOH A 116 297 116 HOH HOH . C 3 HOH A 117 298 117 HOH HOH . C 3 HOH A 118 299 118 HOH HOH . C 3 HOH A 119 300 119 HOH HOH . C 3 HOH A 120 301 120 HOH HOH . C 3 HOH A 121 302 121 HOH HOH . C 3 HOH A 122 303 122 HOH HOH . C 3 HOH A 123 304 123 HOH HOH . C 3 HOH A 124 305 124 HOH HOH . C 3 HOH A 125 306 125 HOH HOH . C 3 HOH A 126 307 126 HOH HOH . C 3 HOH A 127 308 127 HOH HOH . C 3 HOH A 128 309 128 HOH HOH . C 3 HOH A 129 310 129 HOH HOH . C 3 HOH A 130 311 130 HOH HOH . C 3 HOH A 131 312 131 HOH HOH . C 3 HOH A 132 313 132 HOH HOH . C 3 HOH A 133 314 133 HOH HOH . C 3 HOH A 134 315 134 HOH HOH . C 3 HOH A 135 316 135 HOH HOH . C 3 HOH A 136 317 136 HOH HOH . C 3 HOH A 137 318 137 HOH HOH . C 3 HOH A 138 319 138 HOH HOH . C 3 HOH A 139 320 139 HOH HOH . C 3 HOH A 140 321 140 HOH HOH . C 3 HOH A 141 322 141 HOH HOH . C 3 HOH A 142 323 142 HOH HOH . C 3 HOH A 143 324 143 HOH HOH . C 3 HOH A 144 325 144 HOH HOH . C 3 HOH A 145 326 145 HOH HOH . C 3 HOH A 146 327 146 HOH HOH . C 3 HOH A 147 328 147 HOH HOH . C 3 HOH A 148 329 148 HOH HOH . C 3 HOH A 149 330 149 HOH HOH . C 3 HOH A 150 331 150 HOH HOH . C 3 HOH A 151 332 151 HOH HOH . C 3 HOH A 152 333 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . B 2 2.774 38.068 10.184 1 14.13 ? C1 LMR 1 A 1 HETATM 2 O O1A LMR . . . B 2 3.024 36.892 10.242 1 13.75 ? O1A LMR 1 A 1 HETATM 3 O O1B LMR . . . B 2 1.62 38.476 10.432 1 14.45 ? O1B LMR 1 A 1 HETATM 4 C C2 LMR . . . B 2 3.937 39.012 10.19 1 13.78 ? C2 LMR 1 A 1 HETATM 5 O O2 LMR . . . B 2 3.489 40.426 10.359 1 13.56 ? O2 LMR 1 A 1 HETATM 6 C C3 LMR . . . B 2 5.07 38.574 11.138 1 13.25 ? C3 LMR 1 A 1 HETATM 7 C C4 LMR . . . B 2 4.743 39.031 12.574 1 12.93 ? C4 LMR 1 A 1 HETATM 8 O O4A LMR . . . B 2 3.853 38.452 13.195 1 14.28 ? O4A LMR 1 A 1 HETATM 9 O O4B LMR . . . B 2 5.341 40.032 13.065 1 12.91 ? O4B LMR 1 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #