data_3BYA # _model_server_result.job_id jNfNCZLbpV2zS9uQXwMXTA _model_server_result.datetime_utc '2024-11-22 13:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":150}' # _entry.id 3BYA # _exptl.entry_id 3BYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.92 _cell.angle_gamma 90 _cell.entry_id 3BYA _cell.length_a 67.768 _cell.length_b 42.737 _cell.length_c 62.012 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 F CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 E CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc13 A OD1 ASP 93 A ASP 93 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc14 A OD1 ASP 95 A ASP 95 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc19 A OD1 ASP 129 A ASP 129 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc20 A OD1 ASP 131 A ASP 131 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc21 A OD1 ASP 133 A ASP 133 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc25 C CA CA . A CA 149 1_555 G O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc26 D CA CA . A CA 150 1_555 G O HOH . A HOH 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc27 E CA CA . A CA 151 1_555 G O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc28 F CA CA . A CA 152 1_555 G O HOH . A HOH 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BYA _atom_sites.fract_transf_matrix[1][1] 0.014756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004489 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 149 1 CA CA . D 3 CA A 1 150 2 CA CA . E 3 CA A 1 151 3 CA CA . F 3 CA A 1 152 4 CA CA . G 4 HOH A 1 153 1 HOH HOH . G 4 HOH A 2 154 2 HOH HOH . G 4 HOH A 3 155 3 HOH HOH . G 4 HOH A 4 156 4 HOH HOH . G 4 HOH A 5 157 5 HOH HOH . G 4 HOH A 6 158 6 HOH HOH . G 4 HOH A 7 159 7 HOH HOH . G 4 HOH A 8 160 8 HOH HOH . G 4 HOH A 9 161 9 HOH HOH . G 4 HOH A 10 162 10 HOH HOH . G 4 HOH A 11 163 11 HOH HOH . G 4 HOH A 12 164 12 HOH HOH . G 4 HOH A 13 165 13 HOH HOH . G 4 HOH A 14 166 14 HOH HOH . G 4 HOH A 15 167 15 HOH HOH . G 4 HOH A 16 168 16 HOH HOH . G 4 HOH A 17 169 17 HOH HOH . G 4 HOH A 18 170 18 HOH HOH . G 4 HOH A 19 171 19 HOH HOH . G 4 HOH A 20 172 20 HOH HOH . G 4 HOH A 21 173 21 HOH HOH . G 4 HOH A 22 174 22 HOH HOH . G 4 HOH A 23 175 23 HOH HOH . G 4 HOH A 24 176 24 HOH HOH . G 4 HOH A 25 177 25 HOH HOH . G 4 HOH A 26 178 26 HOH HOH . G 4 HOH A 27 179 27 HOH HOH . G 4 HOH A 28 180 28 HOH HOH . G 4 HOH A 29 181 29 HOH HOH . G 4 HOH A 30 182 30 HOH HOH . G 4 HOH A 31 183 31 HOH HOH . G 4 HOH A 32 184 32 HOH HOH . G 4 HOH A 33 185 33 HOH HOH . G 4 HOH A 34 186 34 HOH HOH . G 4 HOH A 35 187 35 HOH HOH . G 4 HOH A 36 188 36 HOH HOH . G 4 HOH A 37 189 37 HOH HOH . G 4 HOH A 38 190 38 HOH HOH . G 4 HOH A 39 191 39 HOH HOH . G 4 HOH A 40 192 40 HOH HOH . G 4 HOH A 41 193 41 HOH HOH . G 4 HOH A 42 194 42 HOH HOH . G 4 HOH A 43 195 43 HOH HOH . G 4 HOH A 44 196 44 HOH HOH . G 4 HOH A 45 197 45 HOH HOH . G 4 HOH A 46 198 46 HOH HOH . G 4 HOH A 47 199 47 HOH HOH . G 4 HOH A 48 200 48 HOH HOH . G 4 HOH A 49 201 49 HOH HOH . G 4 HOH A 50 202 50 HOH HOH . G 4 HOH A 51 203 51 HOH HOH . G 4 HOH A 52 204 52 HOH HOH . G 4 HOH A 53 205 53 HOH HOH . G 4 HOH A 54 206 54 HOH HOH . G 4 HOH A 55 207 55 HOH HOH . G 4 HOH A 56 208 57 HOH HOH . G 4 HOH A 57 209 58 HOH HOH . G 4 HOH A 58 210 59 HOH HOH . G 4 HOH A 59 211 60 HOH HOH . G 4 HOH A 60 212 62 HOH HOH . G 4 HOH A 61 213 63 HOH HOH . G 4 HOH A 62 214 64 HOH HOH . G 4 HOH A 63 215 65 HOH HOH . G 4 HOH A 64 216 66 HOH HOH . G 4 HOH A 65 217 67 HOH HOH . G 4 HOH A 66 218 68 HOH HOH . G 4 HOH A 67 219 69 HOH HOH . G 4 HOH A 68 220 70 HOH HOH . G 4 HOH A 69 221 71 HOH HOH . G 4 HOH A 70 222 72 HOH HOH . G 4 HOH A 71 223 73 HOH HOH . G 4 HOH A 72 224 74 HOH HOH . G 4 HOH A 73 225 75 HOH HOH . G 4 HOH A 74 226 76 HOH HOH . G 4 HOH A 75 227 77 HOH HOH . G 4 HOH A 76 228 78 HOH HOH . G 4 HOH A 77 229 79 HOH HOH . H 4 HOH B 1 56 56 HOH HOH . H 4 HOH B 2 61 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.116 _atom_site.Cartn_y 4.752 _atom_site.Cartn_z -2.213 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 150 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #