data_3BYM # _model_server_result.job_id 4eSme8BjGu3YVHShgqGbYg _model_server_result.datetime_utc '2025-07-31 14:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3}' # _entry.id 3BYM # _exptl.entry_id 3BYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BYM _cell.length_a 42.346 _cell.length_b 73.537 _cell.length_c 92.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 164 A GLU 393 1_555 A N PTR 165 A PTR 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C PTR 165 A PTR 394 1_555 A N THR 166 A THR 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 381 n n S O2 SO4 doub 382 n n S O3 SO4 sing 383 n n S O4 SO4 sing 384 n n # _atom_sites.entry_id 3BYM _atom_sites.fract_transf_matrix[1][1] 0.023615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 2 2 SO4 SO4 . C 2 SO4 A 1 3 3 SO4 SO4 . D 3 AM0 A 1 1 1 AM0 AM0 . E 4 HOH A 1 502 2 HOH HOH . E 4 HOH A 2 503 3 HOH HOH . E 4 HOH A 3 504 4 HOH HOH . E 4 HOH A 4 505 5 HOH HOH . E 4 HOH A 5 506 6 HOH HOH . E 4 HOH A 6 507 7 HOH HOH . E 4 HOH A 7 508 8 HOH HOH . E 4 HOH A 8 509 9 HOH HOH . E 4 HOH A 9 510 10 HOH HOH . E 4 HOH A 10 511 12 HOH HOH . E 4 HOH A 11 512 15 HOH HOH . E 4 HOH A 12 513 16 HOH HOH . E 4 HOH A 13 514 17 HOH HOH . E 4 HOH A 14 515 18 HOH HOH . E 4 HOH A 15 516 19 HOH HOH . E 4 HOH A 16 517 20 HOH HOH . E 4 HOH A 17 518 21 HOH HOH . E 4 HOH A 18 519 22 HOH HOH . E 4 HOH A 19 520 24 HOH HOH . E 4 HOH A 20 521 26 HOH HOH . E 4 HOH A 21 522 27 HOH HOH . E 4 HOH A 22 523 28 HOH HOH . E 4 HOH A 23 524 29 HOH HOH . E 4 HOH A 24 525 30 HOH HOH . E 4 HOH A 25 526 31 HOH HOH . E 4 HOH A 26 527 32 HOH HOH . E 4 HOH A 27 528 33 HOH HOH . E 4 HOH A 28 529 34 HOH HOH . E 4 HOH A 29 530 35 HOH HOH . E 4 HOH A 30 531 38 HOH HOH . E 4 HOH A 31 532 43 HOH HOH . E 4 HOH A 32 533 44 HOH HOH . E 4 HOH A 33 534 46 HOH HOH . E 4 HOH A 34 535 48 HOH HOH . E 4 HOH A 35 536 49 HOH HOH . E 4 HOH A 36 537 50 HOH HOH . E 4 HOH A 37 538 51 HOH HOH . E 4 HOH A 38 539 52 HOH HOH . E 4 HOH A 39 540 53 HOH HOH . E 4 HOH A 40 541 54 HOH HOH . E 4 HOH A 41 542 56 HOH HOH . E 4 HOH A 42 543 58 HOH HOH . E 4 HOH A 43 544 59 HOH HOH . E 4 HOH A 44 545 61 HOH HOH . E 4 HOH A 45 546 62 HOH HOH . E 4 HOH A 46 547 63 HOH HOH . E 4 HOH A 47 548 64 HOH HOH . E 4 HOH A 48 549 65 HOH HOH . E 4 HOH A 49 550 66 HOH HOH . E 4 HOH A 50 551 67 HOH HOH . E 4 HOH A 51 552 68 HOH HOH . E 4 HOH A 52 553 71 HOH HOH . E 4 HOH A 53 554 72 HOH HOH . E 4 HOH A 54 555 73 HOH HOH . E 4 HOH A 55 556 74 HOH HOH . E 4 HOH A 56 557 75 HOH HOH . E 4 HOH A 57 558 76 HOH HOH . E 4 HOH A 58 559 77 HOH HOH . E 4 HOH A 59 560 80 HOH HOH . E 4 HOH A 60 561 85 HOH HOH . E 4 HOH A 61 562 86 HOH HOH . E 4 HOH A 62 563 87 HOH HOH . E 4 HOH A 63 564 89 HOH HOH . E 4 HOH A 64 565 92 HOH HOH . E 4 HOH A 65 566 93 HOH HOH . E 4 HOH A 66 567 95 HOH HOH . E 4 HOH A 67 568 96 HOH HOH . E 4 HOH A 68 569 97 HOH HOH . E 4 HOH A 69 570 98 HOH HOH . E 4 HOH A 70 571 99 HOH HOH . E 4 HOH A 71 572 100 HOH HOH . E 4 HOH A 72 573 101 HOH HOH . E 4 HOH A 73 574 102 HOH HOH . E 4 HOH A 74 575 103 HOH HOH . E 4 HOH A 75 576 104 HOH HOH . E 4 HOH A 76 577 105 HOH HOH . E 4 HOH A 77 578 106 HOH HOH . E 4 HOH A 78 579 109 HOH HOH . E 4 HOH A 79 580 110 HOH HOH . E 4 HOH A 80 581 111 HOH HOH . E 4 HOH A 81 582 112 HOH HOH . E 4 HOH A 82 583 113 HOH HOH . E 4 HOH A 83 584 116 HOH HOH . E 4 HOH A 84 585 118 HOH HOH . E 4 HOH A 85 586 119 HOH HOH . E 4 HOH A 86 587 120 HOH HOH . E 4 HOH A 87 588 121 HOH HOH . E 4 HOH A 88 589 122 HOH HOH . E 4 HOH A 89 590 123 HOH HOH . E 4 HOH A 90 591 124 HOH HOH . E 4 HOH A 91 592 126 HOH HOH . E 4 HOH A 92 593 127 HOH HOH . E 4 HOH A 93 594 128 HOH HOH . E 4 HOH A 94 595 129 HOH HOH . E 4 HOH A 95 596 130 HOH HOH . E 4 HOH A 96 597 131 HOH HOH . E 4 HOH A 97 598 132 HOH HOH . E 4 HOH A 98 599 133 HOH HOH . E 4 HOH A 99 600 135 HOH HOH . E 4 HOH A 100 601 136 HOH HOH . E 4 HOH A 101 602 138 HOH HOH . E 4 HOH A 102 603 139 HOH HOH . E 4 HOH A 103 604 140 HOH HOH . E 4 HOH A 104 605 141 HOH HOH . E 4 HOH A 105 606 142 HOH HOH . E 4 HOH A 106 607 143 HOH HOH . E 4 HOH A 107 608 144 HOH HOH . E 4 HOH A 108 609 145 HOH HOH . E 4 HOH A 109 610 148 HOH HOH . E 4 HOH A 110 611 152 HOH HOH . E 4 HOH A 111 612 153 HOH HOH . E 4 HOH A 112 613 154 HOH HOH . E 4 HOH A 113 614 155 HOH HOH . E 4 HOH A 114 615 156 HOH HOH . E 4 HOH A 115 616 157 HOH HOH . E 4 HOH A 116 617 159 HOH HOH . E 4 HOH A 117 618 160 HOH HOH . E 4 HOH A 118 619 161 HOH HOH . E 4 HOH A 119 620 163 HOH HOH . E 4 HOH A 120 621 164 HOH HOH . E 4 HOH A 121 622 165 HOH HOH . E 4 HOH A 122 623 166 HOH HOH . E 4 HOH A 123 624 167 HOH HOH . E 4 HOH A 124 625 168 HOH HOH . E 4 HOH A 125 626 169 HOH HOH . E 4 HOH A 126 627 172 HOH HOH . E 4 HOH A 127 628 173 HOH HOH . E 4 HOH A 128 629 177 HOH HOH . E 4 HOH A 129 630 178 HOH HOH . E 4 HOH A 130 631 179 HOH HOH . E 4 HOH A 131 632 181 HOH HOH . E 4 HOH A 132 633 182 HOH HOH . E 4 HOH A 133 634 183 HOH HOH . E 4 HOH A 134 635 186 HOH HOH . E 4 HOH A 135 636 187 HOH HOH . E 4 HOH A 136 637 188 HOH HOH . E 4 HOH A 137 638 189 HOH HOH . E 4 HOH A 138 639 190 HOH HOH . E 4 HOH A 139 640 191 HOH HOH . E 4 HOH A 140 641 192 HOH HOH . E 4 HOH A 141 642 193 HOH HOH . E 4 HOH A 142 643 194 HOH HOH . E 4 HOH A 143 644 195 HOH HOH . E 4 HOH A 144 645 197 HOH HOH . E 4 HOH A 145 646 198 HOH HOH . E 4 HOH A 146 647 199 HOH HOH . E 4 HOH A 147 648 200 HOH HOH . E 4 HOH A 148 649 201 HOH HOH . E 4 HOH A 149 650 202 HOH HOH . E 4 HOH A 150 651 203 HOH HOH . E 4 HOH A 151 652 204 HOH HOH . E 4 HOH A 152 653 206 HOH HOH . E 4 HOH A 153 654 208 HOH HOH . E 4 HOH A 154 655 210 HOH HOH . E 4 HOH A 155 656 211 HOH HOH . E 4 HOH A 156 657 212 HOH HOH . E 4 HOH A 157 658 213 HOH HOH . E 4 HOH A 158 659 214 HOH HOH . E 4 HOH A 159 660 215 HOH HOH . E 4 HOH A 160 661 216 HOH HOH . E 4 HOH A 161 662 217 HOH HOH . E 4 HOH A 162 663 218 HOH HOH . E 4 HOH A 163 664 219 HOH HOH . E 4 HOH A 164 665 220 HOH HOH . E 4 HOH A 165 666 221 HOH HOH . E 4 HOH A 166 667 222 HOH HOH . E 4 HOH A 167 668 224 HOH HOH . E 4 HOH A 168 669 225 HOH HOH . E 4 HOH A 169 670 226 HOH HOH . E 4 HOH A 170 671 227 HOH HOH . E 4 HOH A 171 672 229 HOH HOH . E 4 HOH A 172 673 230 HOH HOH . E 4 HOH A 173 674 231 HOH HOH . E 4 HOH A 174 675 234 HOH HOH . E 4 HOH A 175 676 235 HOH HOH . E 4 HOH A 176 677 236 HOH HOH . E 4 HOH A 177 678 238 HOH HOH . E 4 HOH A 178 679 240 HOH HOH . E 4 HOH A 179 680 241 HOH HOH . E 4 HOH A 180 681 242 HOH HOH . E 4 HOH A 181 682 243 HOH HOH . E 4 HOH A 182 683 244 HOH HOH . E 4 HOH A 183 684 245 HOH HOH . E 4 HOH A 184 685 247 HOH HOH . E 4 HOH A 185 686 248 HOH HOH . E 4 HOH A 186 687 249 HOH HOH . E 4 HOH A 187 688 250 HOH HOH . E 4 HOH A 188 689 251 HOH HOH . E 4 HOH A 189 690 252 HOH HOH . E 4 HOH A 190 691 253 HOH HOH . E 4 HOH A 191 692 254 HOH HOH . E 4 HOH A 192 693 255 HOH HOH . E 4 HOH A 193 694 258 HOH HOH . E 4 HOH A 194 695 262 HOH HOH . E 4 HOH A 195 696 263 HOH HOH . E 4 HOH A 196 697 264 HOH HOH . E 4 HOH A 197 698 266 HOH HOH . E 4 HOH A 198 699 270 HOH HOH . E 4 HOH A 199 700 271 HOH HOH . E 4 HOH A 200 701 272 HOH HOH . E 4 HOH A 201 702 273 HOH HOH . E 4 HOH A 202 703 275 HOH HOH . E 4 HOH A 203 704 277 HOH HOH . E 4 HOH A 204 705 278 HOH HOH . E 4 HOH A 205 706 279 HOH HOH . E 4 HOH A 206 707 280 HOH HOH . E 4 HOH A 207 708 281 HOH HOH . E 4 HOH A 208 709 282 HOH HOH . E 4 HOH A 209 710 283 HOH HOH . E 4 HOH A 210 711 284 HOH HOH . E 4 HOH A 211 712 285 HOH HOH . E 4 HOH A 212 713 290 HOH HOH . E 4 HOH A 213 714 292 HOH HOH . E 4 HOH A 214 715 295 HOH HOH . E 4 HOH A 215 716 296 HOH HOH . E 4 HOH A 216 717 297 HOH HOH . E 4 HOH A 217 718 298 HOH HOH . E 4 HOH A 218 719 299 HOH HOH . E 4 HOH A 219 720 300 HOH HOH . E 4 HOH A 220 721 302 HOH HOH . E 4 HOH A 221 722 305 HOH HOH . E 4 HOH A 222 723 306 HOH HOH . E 4 HOH A 223 724 308 HOH HOH . E 4 HOH A 224 725 309 HOH HOH . E 4 HOH A 225 726 313 HOH HOH . E 4 HOH A 226 727 315 HOH HOH . E 4 HOH A 227 728 316 HOH HOH . E 4 HOH A 228 729 318 HOH HOH . E 4 HOH A 229 730 319 HOH HOH . E 4 HOH A 230 731 320 HOH HOH . E 4 HOH A 231 732 321 HOH HOH . E 4 HOH A 232 733 323 HOH HOH . E 4 HOH A 233 734 324 HOH HOH . E 4 HOH A 234 735 325 HOH HOH . E 4 HOH A 235 736 326 HOH HOH . E 4 HOH A 236 737 329 HOH HOH . E 4 HOH A 237 738 330 HOH HOH . E 4 HOH A 238 739 335 HOH HOH . E 4 HOH A 239 740 337 HOH HOH . E 4 HOH A 240 741 340 HOH HOH . E 4 HOH A 241 742 341 HOH HOH . E 4 HOH A 242 743 342 HOH HOH . E 4 HOH A 243 744 344 HOH HOH . E 4 HOH A 244 745 345 HOH HOH . E 4 HOH A 245 746 348 HOH HOH . E 4 HOH A 246 747 350 HOH HOH . E 4 HOH A 247 748 351 HOH HOH . E 4 HOH A 248 749 353 HOH HOH . E 4 HOH A 249 750 354 HOH HOH . E 4 HOH A 250 751 355 HOH HOH . E 4 HOH A 251 752 356 HOH HOH . E 4 HOH A 252 753 357 HOH HOH . E 4 HOH A 253 754 358 HOH HOH . E 4 HOH A 254 755 359 HOH HOH . E 4 HOH A 255 756 360 HOH HOH . E 4 HOH A 256 757 363 HOH HOH . E 4 HOH A 257 758 365 HOH HOH . E 4 HOH A 258 759 366 HOH HOH . E 4 HOH A 259 760 367 HOH HOH . E 4 HOH A 260 761 368 HOH HOH . E 4 HOH A 261 762 369 HOH HOH . E 4 HOH A 262 763 372 HOH HOH . E 4 HOH A 263 764 374 HOH HOH . E 4 HOH A 264 765 375 HOH HOH . E 4 HOH A 265 766 379 HOH HOH . E 4 HOH A 266 767 382 HOH HOH . E 4 HOH A 267 768 384 HOH HOH . E 4 HOH A 268 769 386 HOH HOH . E 4 HOH A 269 770 387 HOH HOH . E 4 HOH A 270 771 388 HOH HOH . E 4 HOH A 271 772 390 HOH HOH . E 4 HOH A 272 773 396 HOH HOH . E 4 HOH A 273 774 397 HOH HOH . E 4 HOH A 274 775 400 HOH HOH . E 4 HOH A 275 776 402 HOH HOH . E 4 HOH A 276 777 418 HOH HOH . E 4 HOH A 277 778 425 HOH HOH . E 4 HOH A 278 779 433 HOH HOH . E 4 HOH A 279 780 434 HOH HOH . E 4 HOH A 280 781 435 HOH HOH . E 4 HOH A 281 782 436 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 39.794 37.919 73.407 1 46.29 ? S SO4 3 A 1 HETATM 2 O O1 SO4 . . . C 2 38.866 36.77 73.206 1 46.85 ? O1 SO4 3 A 1 HETATM 3 O O2 SO4 . . . C 2 40.931 37.813 72.449 1 45.89 ? O2 SO4 3 A 1 HETATM 4 O O3 SO4 . . . C 2 39.063 39.193 73.195 1 45.75 ? O3 SO4 3 A 1 HETATM 5 O O4 SO4 . . . C 2 40.335 37.877 74.796 1 45.58 ? O4 SO4 3 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #