data_3BYR # _model_server_result.job_id mCrb1lvGxszMAO5Iq8pbEg _model_server_result.datetime_utc '2024-12-26 23:10:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3byr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3BYR # _exptl.entry_id 3BYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BYR _cell.length_a 50.75 _cell.length_b 74.56 _cell.length_c 43.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 74.56 43.94 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 31 A HIS 31 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OD2 ASP 32 A ASP 32 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc3 A ND1 HIS 47 A HIS 47 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 A NE2 HIS 82 A HIS 82 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc6 A OE2 GLU 84 A GLU 84 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc7 A OE1 GLU 84 A GLU 84 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 B ZN ZN . A ZN 501 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc9 E ZN ZN . A ZN 504 1_555 F O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BYR _atom_sites.fract_transf_matrix[1][1] 0.019704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 2 ZN A 1 502 502 ZN ZN . D 2 ZN A 1 503 503 ZN ZN . E 2 ZN A 1 504 504 ZN ZN . F 3 HOH A 1 505 505 HOH HOH . F 3 HOH A 2 506 506 HOH HOH . F 3 HOH A 3 507 507 HOH HOH . F 3 HOH A 4 508 508 HOH HOH . F 3 HOH A 5 509 509 HOH HOH . F 3 HOH A 6 510 510 HOH HOH . F 3 HOH A 7 511 511 HOH HOH . F 3 HOH A 8 512 512 HOH HOH . F 3 HOH A 9 513 513 HOH HOH . F 3 HOH A 10 514 514 HOH HOH . F 3 HOH A 11 515 515 HOH HOH . F 3 HOH A 12 516 516 HOH HOH . F 3 HOH A 13 517 517 HOH HOH . F 3 HOH A 14 518 518 HOH HOH . F 3 HOH A 15 519 519 HOH HOH . F 3 HOH A 16 520 520 HOH HOH . F 3 HOH A 17 521 521 HOH HOH . F 3 HOH A 18 522 522 HOH HOH . F 3 HOH A 19 523 523 HOH HOH . F 3 HOH A 20 524 524 HOH HOH . F 3 HOH A 21 525 525 HOH HOH . F 3 HOH A 22 526 526 HOH HOH . F 3 HOH A 23 527 527 HOH HOH . F 3 HOH A 24 528 528 HOH HOH . F 3 HOH A 25 529 529 HOH HOH . F 3 HOH A 26 530 530 HOH HOH . F 3 HOH A 27 531 531 HOH HOH . F 3 HOH A 28 532 532 HOH HOH . F 3 HOH A 29 533 533 HOH HOH . F 3 HOH A 30 534 534 HOH HOH . F 3 HOH A 31 535 535 HOH HOH . F 3 HOH A 32 536 536 HOH HOH . F 3 HOH A 33 537 537 HOH HOH . F 3 HOH A 34 538 538 HOH HOH . F 3 HOH A 35 539 539 HOH HOH . F 3 HOH A 36 540 540 HOH HOH . F 3 HOH A 37 541 541 HOH HOH . F 3 HOH A 38 542 542 HOH HOH . F 3 HOH A 39 543 543 HOH HOH . F 3 HOH A 40 544 544 HOH HOH . F 3 HOH A 41 545 545 HOH HOH . F 3 HOH A 42 546 546 HOH HOH . F 3 HOH A 43 547 547 HOH HOH . F 3 HOH A 44 548 548 HOH HOH . F 3 HOH A 45 549 549 HOH HOH . F 3 HOH A 46 550 550 HOH HOH . F 3 HOH A 47 551 551 HOH HOH . F 3 HOH A 48 552 552 HOH HOH . F 3 HOH A 49 553 553 HOH HOH . F 3 HOH A 50 554 554 HOH HOH . F 3 HOH A 51 555 555 HOH HOH . F 3 HOH A 52 556 556 HOH HOH . F 3 HOH A 53 557 557 HOH HOH . F 3 HOH A 54 558 558 HOH HOH . F 3 HOH A 55 559 559 HOH HOH . F 3 HOH A 56 560 560 HOH HOH . F 3 HOH A 57 561 561 HOH HOH . F 3 HOH A 58 562 562 HOH HOH . F 3 HOH A 59 563 563 HOH HOH . F 3 HOH A 60 564 564 HOH HOH . F 3 HOH A 61 565 565 HOH HOH . F 3 HOH A 62 566 566 HOH HOH . F 3 HOH A 63 567 567 HOH HOH . F 3 HOH A 64 568 568 HOH HOH . F 3 HOH A 65 569 569 HOH HOH . F 3 HOH A 66 570 570 HOH HOH . F 3 HOH A 67 571 571 HOH HOH . F 3 HOH A 68 572 572 HOH HOH . F 3 HOH A 69 573 573 HOH HOH . F 3 HOH A 70 574 574 HOH HOH . F 3 HOH A 71 575 575 HOH HOH . F 3 HOH A 72 576 576 HOH HOH . F 3 HOH A 73 577 577 HOH HOH . F 3 HOH A 74 578 578 HOH HOH . F 3 HOH A 75 579 579 HOH HOH . F 3 HOH A 76 580 580 HOH HOH . F 3 HOH A 77 581 581 HOH HOH . F 3 HOH A 78 582 582 HOH HOH . F 3 HOH A 79 583 583 HOH HOH . F 3 HOH A 80 584 584 HOH HOH . F 3 HOH A 81 585 585 HOH HOH . F 3 HOH A 82 586 586 HOH HOH . F 3 HOH A 83 587 587 HOH HOH . F 3 HOH A 84 588 588 HOH HOH . F 3 HOH A 85 589 589 HOH HOH . F 3 HOH A 86 590 590 HOH HOH . F 3 HOH A 87 591 591 HOH HOH . F 3 HOH A 88 592 592 HOH HOH . F 3 HOH A 89 593 593 HOH HOH . F 3 HOH A 90 594 594 HOH HOH . F 3 HOH A 91 595 595 HOH HOH . F 3 HOH A 92 596 596 HOH HOH . F 3 HOH A 93 597 597 HOH HOH . F 3 HOH A 94 598 598 HOH HOH . F 3 HOH A 95 599 599 HOH HOH . F 3 HOH A 96 600 600 HOH HOH . F 3 HOH A 97 601 601 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.725 _atom_site.Cartn_y 34.675 _atom_site.Cartn_z 12.408 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #