data_3BYR
#
_model_server_result.job_id            vVg_Nj-rLiodieP4iYLK7g 
_model_server_result.datetime_utc      '2024-12-26 23:43:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3byr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    3BYR 
#
_exptl.entry_id    3BYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BYR 
_cell.length_a            50.75 
_cell.length_b            74.56 
_cell.length_c            43.94 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 74.56 43.94 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 31 A HIS 31 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 A OD2 ASP 32 A ASP 32 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc3 A ND1 HIS 47 A HIS 47 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc5 A NE2 HIS 82 A HIS 82 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc6 A OE2 GLU 84 A GLU 84 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc7 A OE1 GLU 84 A GLU 84 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc8 B ZN ZN . A ZN 501 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc9 E ZN ZN . A ZN 504 1_555 F O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3BYR 
_atom_sites.fract_transf_matrix[1][1]    0.019704 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 2 ZN A 1 502 502 ZN ZN . 
D 2 ZN A 1 503 503 ZN ZN . 
E 2 ZN A 1 504 504 ZN ZN . 
F 3 HOH A 1 505 505 HOH HOH . 
F 3 HOH A 2 506 506 HOH HOH . 
F 3 HOH A 3 507 507 HOH HOH . 
F 3 HOH A 4 508 508 HOH HOH . 
F 3 HOH A 5 509 509 HOH HOH . 
F 3 HOH A 6 510 510 HOH HOH . 
F 3 HOH A 7 511 511 HOH HOH . 
F 3 HOH A 8 512 512 HOH HOH . 
F 3 HOH A 9 513 513 HOH HOH . 
F 3 HOH A 10 514 514 HOH HOH . 
F 3 HOH A 11 515 515 HOH HOH . 
F 3 HOH A 12 516 516 HOH HOH . 
F 3 HOH A 13 517 517 HOH HOH . 
F 3 HOH A 14 518 518 HOH HOH . 
F 3 HOH A 15 519 519 HOH HOH . 
F 3 HOH A 16 520 520 HOH HOH . 
F 3 HOH A 17 521 521 HOH HOH . 
F 3 HOH A 18 522 522 HOH HOH . 
F 3 HOH A 19 523 523 HOH HOH . 
F 3 HOH A 20 524 524 HOH HOH . 
F 3 HOH A 21 525 525 HOH HOH . 
F 3 HOH A 22 526 526 HOH HOH . 
F 3 HOH A 23 527 527 HOH HOH . 
F 3 HOH A 24 528 528 HOH HOH . 
F 3 HOH A 25 529 529 HOH HOH . 
F 3 HOH A 26 530 530 HOH HOH . 
F 3 HOH A 27 531 531 HOH HOH . 
F 3 HOH A 28 532 532 HOH HOH . 
F 3 HOH A 29 533 533 HOH HOH . 
F 3 HOH A 30 534 534 HOH HOH . 
F 3 HOH A 31 535 535 HOH HOH . 
F 3 HOH A 32 536 536 HOH HOH . 
F 3 HOH A 33 537 537 HOH HOH . 
F 3 HOH A 34 538 538 HOH HOH . 
F 3 HOH A 35 539 539 HOH HOH . 
F 3 HOH A 36 540 540 HOH HOH . 
F 3 HOH A 37 541 541 HOH HOH . 
F 3 HOH A 38 542 542 HOH HOH . 
F 3 HOH A 39 543 543 HOH HOH . 
F 3 HOH A 40 544 544 HOH HOH . 
F 3 HOH A 41 545 545 HOH HOH . 
F 3 HOH A 42 546 546 HOH HOH . 
F 3 HOH A 43 547 547 HOH HOH . 
F 3 HOH A 44 548 548 HOH HOH . 
F 3 HOH A 45 549 549 HOH HOH . 
F 3 HOH A 46 550 550 HOH HOH . 
F 3 HOH A 47 551 551 HOH HOH . 
F 3 HOH A 48 552 552 HOH HOH . 
F 3 HOH A 49 553 553 HOH HOH . 
F 3 HOH A 50 554 554 HOH HOH . 
F 3 HOH A 51 555 555 HOH HOH . 
F 3 HOH A 52 556 556 HOH HOH . 
F 3 HOH A 53 557 557 HOH HOH . 
F 3 HOH A 54 558 558 HOH HOH . 
F 3 HOH A 55 559 559 HOH HOH . 
F 3 HOH A 56 560 560 HOH HOH . 
F 3 HOH A 57 561 561 HOH HOH . 
F 3 HOH A 58 562 562 HOH HOH . 
F 3 HOH A 59 563 563 HOH HOH . 
F 3 HOH A 60 564 564 HOH HOH . 
F 3 HOH A 61 565 565 HOH HOH . 
F 3 HOH A 62 566 566 HOH HOH . 
F 3 HOH A 63 567 567 HOH HOH . 
F 3 HOH A 64 568 568 HOH HOH . 
F 3 HOH A 65 569 569 HOH HOH . 
F 3 HOH A 66 570 570 HOH HOH . 
F 3 HOH A 67 571 571 HOH HOH . 
F 3 HOH A 68 572 572 HOH HOH . 
F 3 HOH A 69 573 573 HOH HOH . 
F 3 HOH A 70 574 574 HOH HOH . 
F 3 HOH A 71 575 575 HOH HOH . 
F 3 HOH A 72 576 576 HOH HOH . 
F 3 HOH A 73 577 577 HOH HOH . 
F 3 HOH A 74 578 578 HOH HOH . 
F 3 HOH A 75 579 579 HOH HOH . 
F 3 HOH A 76 580 580 HOH HOH . 
F 3 HOH A 77 581 581 HOH HOH . 
F 3 HOH A 78 582 582 HOH HOH . 
F 3 HOH A 79 583 583 HOH HOH . 
F 3 HOH A 80 584 584 HOH HOH . 
F 3 HOH A 81 585 585 HOH HOH . 
F 3 HOH A 82 586 586 HOH HOH . 
F 3 HOH A 83 587 587 HOH HOH . 
F 3 HOH A 84 588 588 HOH HOH . 
F 3 HOH A 85 589 589 HOH HOH . 
F 3 HOH A 86 590 590 HOH HOH . 
F 3 HOH A 87 591 591 HOH HOH . 
F 3 HOH A 88 592 592 HOH HOH . 
F 3 HOH A 89 593 593 HOH HOH . 
F 3 HOH A 90 594 594 HOH HOH . 
F 3 HOH A 91 595 595 HOH HOH . 
F 3 HOH A 92 596 596 HOH HOH . 
F 3 HOH A 93 597 597 HOH HOH . 
F 3 HOH A 94 598 598 HOH HOH . 
F 3 HOH A 95 599 599 HOH HOH . 
F 3 HOH A 96 600 600 HOH HOH . 
F 3 HOH A 97 601 601 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -0.007 
_atom_site.Cartn_y               35.537 
_atom_site.Cartn_z               10.985 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        34.28 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           504 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#