data_3BYS # _model_server_result.job_id ae4sSze16OF8J433tvotSQ _model_server_result.datetime_utc '2024-11-26 05:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3BYS # _exptl.entry_id 3BYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 589.611 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methyl-N~3~-(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)-N~1~-[3-(trifluoromethyl)phenyl]benzene-1,3-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BYS _cell.length_a 44 _cell.length_b 73.7 _cell.length_c 101.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H30 F3 N7 O2' _chem_comp.formula_weight 589.611 _chem_comp.id AM5 _chem_comp.mon_nstd_flag . _chem_comp.name 4-methyl-N~3~-(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)-N~1~-[3-(trifluoromethyl)phenyl]benzene-1,3-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C9 AM5 doub 13 n y C7 C21 AM5 sing 14 n y C9 C10 AM5 sing 15 n y C10 C11 AM5 sing 16 n n C10 C12 AM5 doub 17 n y C11 N3 AM5 sing 18 n n C11 O1 AM5 doub 19 n n N3 C14 AM5 sing 20 n n C14 C15 AM5 doub 21 n y C14 C16 AM5 sing 22 n y C15 C19 AM5 sing 23 n y C19 C18 AM5 doub 24 n y C18 C17 AM5 sing 25 n y C17 C16 AM5 doub 26 n y C17 C20 AM5 sing 27 n n C20 F1 AM5 sing 28 n n C20 F3 AM5 sing 29 n n C20 F2 AM5 sing 30 n n C12 C13 AM5 sing 31 n y C13 C21 AM5 doub 32 n y C13 C8 AM5 sing 33 n n C21 C22 AM5 sing 34 n n N1 C23 AM5 doub 35 n y N1 C26 AM5 sing 36 n y C23 C24 AM5 sing 37 n y C24 C25 AM5 doub 38 n y C24 N6 AM5 sing 39 n n C25 N4 AM5 sing 40 n y N4 C26 AM5 doub 41 n y C26 N7 AM5 sing 42 n n N6 C8 AM5 sing 43 n n C8 O2 AM5 doub 44 n n N7 C5 AM5 sing 45 n n C27 C28 AM5 doub 46 n y C27 C31 AM5 sing 47 n y C28 C29 AM5 sing 48 n y C28 N5 AM5 sing 49 n n C29 C30 AM5 doub 50 n y C30 C5 AM5 sing 51 n y C5 C31 AM5 doub 52 n y C1 N2 AM5 sing 53 n n C1 C6 AM5 sing 54 n n N2 C3 AM5 sing 55 n n N2 C2 AM5 sing 56 n n C3 C4 AM5 sing 57 n n C4 N5 AM5 sing 58 n n N5 C6 AM5 sing 59 n n C7 H7 AM5 sing 60 n n C9 H9 AM5 sing 61 n n N3 HN3 AM5 sing 62 n n C15 H15 AM5 sing 63 n n C19 H19 AM5 sing 64 n n C18 H18 AM5 sing 65 n n C16 H16 AM5 sing 66 n n C12 H12 AM5 sing 67 n n C22 H22 AM5 sing 68 n n C22 H22A AM5 sing 69 n n C22 H22B AM5 sing 70 n n C23 H23 AM5 sing 71 n n C25 H25 AM5 sing 72 n n N6 HN6 AM5 sing 73 n n N7 HN7 AM5 sing 74 n n C27 H27 AM5 sing 75 n n C29 H29 AM5 sing 76 n n C30 H30 AM5 sing 77 n n C31 H31 AM5 sing 78 n n C1 H1 AM5 sing 79 n n C1 H1A AM5 sing 80 n n C3 H3 AM5 sing 81 n n C3 H3A AM5 sing 82 n n C4 H4 AM5 sing 83 n n C4 H4A AM5 sing 84 n n C6 H6 AM5 sing 85 n n C6 H6A AM5 sing 86 n n C2 H2 AM5 sing 87 n n C2 H2A AM5 sing 88 n n C2 H2B AM5 sing 89 n n # _atom_sites.entry_id 3BYS _atom_sites.fract_transf_matrix[1][1] 0.022727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AM5 A 1 1 1 AM5 AM5 . C 3 HOH A 1 502 1 HOH HOH . C 3 HOH A 2 503 4 HOH HOH . C 3 HOH A 3 504 6 HOH HOH . C 3 HOH A 4 505 7 HOH HOH . C 3 HOH A 5 506 8 HOH HOH . C 3 HOH A 6 507 9 HOH HOH . C 3 HOH A 7 508 11 HOH HOH . C 3 HOH A 8 509 12 HOH HOH . C 3 HOH A 9 510 14 HOH HOH . C 3 HOH A 10 511 15 HOH HOH . C 3 HOH A 11 512 20 HOH HOH . C 3 HOH A 12 513 21 HOH HOH . C 3 HOH A 13 514 22 HOH HOH . C 3 HOH A 14 515 23 HOH HOH . C 3 HOH A 15 516 26 HOH HOH . C 3 HOH A 16 517 27 HOH HOH . C 3 HOH A 17 518 29 HOH HOH . C 3 HOH A 18 519 36 HOH HOH . C 3 HOH A 19 520 37 HOH HOH . C 3 HOH A 20 521 38 HOH HOH . C 3 HOH A 21 522 39 HOH HOH . C 3 HOH A 22 523 40 HOH HOH . C 3 HOH A 23 524 41 HOH HOH . C 3 HOH A 24 525 42 HOH HOH . C 3 HOH A 25 526 43 HOH HOH . C 3 HOH A 26 527 44 HOH HOH . C 3 HOH A 27 528 47 HOH HOH . C 3 HOH A 28 529 49 HOH HOH . C 3 HOH A 29 530 51 HOH HOH . C 3 HOH A 30 531 52 HOH HOH . C 3 HOH A 31 532 53 HOH HOH . C 3 HOH A 32 533 54 HOH HOH . C 3 HOH A 33 534 55 HOH HOH . C 3 HOH A 34 535 56 HOH HOH . C 3 HOH A 35 536 57 HOH HOH . C 3 HOH A 36 537 58 HOH HOH . C 3 HOH A 37 538 59 HOH HOH . C 3 HOH A 38 539 60 HOH HOH . C 3 HOH A 39 540 62 HOH HOH . C 3 HOH A 40 541 63 HOH HOH . C 3 HOH A 41 542 64 HOH HOH . C 3 HOH A 42 543 65 HOH HOH . C 3 HOH A 43 544 66 HOH HOH . C 3 HOH A 44 545 67 HOH HOH . C 3 HOH A 45 546 68 HOH HOH . C 3 HOH A 46 547 69 HOH HOH . C 3 HOH A 47 548 70 HOH HOH . C 3 HOH A 48 549 71 HOH HOH . C 3 HOH A 49 550 72 HOH HOH . C 3 HOH A 50 551 74 HOH HOH . C 3 HOH A 51 552 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 AM5 . . . B 2 15.844 -2.078 42.621 1 17.81 ? C7 AM5 1 A 1 HETATM 2 C C9 AM5 . . . B 2 15.273 -1.108 41.738 1 18.79 ? C9 AM5 1 A 1 HETATM 3 C C10 AM5 . . . B 2 16.11 -0.391 40.761 1 19.05 ? C10 AM5 1 A 1 HETATM 4 C C11 AM5 . . . B 2 15.614 0.596 39.763 1 19.77 ? C11 AM5 1 A 1 HETATM 5 N N3 AM5 . . . B 2 14.351 1.002 40.075 1 19.39 ? N3 AM5 1 A 1 HETATM 6 C C14 AM5 . . . B 2 13.52 1.708 39.252 1 23.81 ? C14 AM5 1 A 1 HETATM 7 C C15 AM5 . . . B 2 12.329 2.283 39.838 1 22.72 ? C15 AM5 1 A 1 HETATM 8 C C19 AM5 . . . B 2 11.361 3.071 39.083 1 23.94 ? C19 AM5 1 A 1 HETATM 9 C C18 AM5 . . . B 2 11.598 3.283 37.69 1 24 ? C18 AM5 1 A 1 HETATM 10 C C17 AM5 . . . B 2 12.788 2.706 37.08 1 24.68 ? C17 AM5 1 A 1 HETATM 11 C C16 AM5 . . . B 2 13.76 1.916 37.855 1 22.3 ? C16 AM5 1 A 1 HETATM 12 C C20 AM5 . . . B 2 13.072 2.856 35.606 1 26.23 ? C20 AM5 1 A 1 HETATM 13 F F1 AM5 . . . B 2 13.527 1.657 35.185 1 28.72 ? F1 AM5 1 A 1 HETATM 14 F F3 AM5 . . . B 2 14.005 3.77 35.528 1 27.49 ? F3 AM5 1 A 1 HETATM 15 F F2 AM5 . . . B 2 12.07 3.246 34.832 1 27.22 ? F2 AM5 1 A 1 HETATM 16 C C12 AM5 . . . B 2 17.503 -0.596 40.645 1 17.94 ? C12 AM5 1 A 1 HETATM 17 C C13 AM5 . . . B 2 18.036 -1.542 41.516 1 19.06 ? C13 AM5 1 A 1 HETATM 18 C C21 AM5 . . . B 2 17.243 -2.275 42.477 1 18.6 ? C21 AM5 1 A 1 HETATM 19 C C22 AM5 . . . B 2 17.859 -3.286 43.343 1 20.5 ? C22 AM5 1 A 1 HETATM 20 N N1 AM5 . . . B 2 22.989 -3.291 38.636 1 19.99 ? N1 AM5 1 A 1 HETATM 21 C C23 AM5 . . . B 2 21.672 -3.187 38.983 1 20.93 ? C23 AM5 1 A 1 HETATM 22 C C24 AM5 . . . B 2 21.252 -2.467 40.159 1 18.14 ? C24 AM5 1 A 1 HETATM 23 C C25 AM5 . . . B 2 22.3 -1.868 40.94 1 20.08 ? C25 AM5 1 A 1 HETATM 24 N N4 AM5 . . . B 2 23.571 -1.997 40.564 1 19.34 ? N4 AM5 1 A 1 HETATM 25 C C26 AM5 . . . B 2 23.929 -2.698 39.422 1 21.27 ? C26 AM5 1 A 1 HETATM 26 N N6 AM5 . . . B 2 19.918 -2.417 40.48 1 18.68 ? N6 AM5 1 A 1 HETATM 27 C C8 AM5 . . . B 2 19.411 -1.714 41.487 1 18.14 ? C8 AM5 1 A 1 HETATM 28 O O2 AM5 . . . B 2 20.061 -1.206 42.395 1 22.2 ? O2 AM5 1 A 1 HETATM 29 N N7 AM5 . . . B 2 25.269 -2.802 39.033 1 23.1 ? N7 AM5 1 A 1 HETATM 30 C C27 AM5 . . . B 2 27.22 -0.021 40.53 1 26.59 ? C27 AM5 1 A 1 HETATM 31 C C28 AM5 . . . B 2 28.501 -0.677 40.493 1 28.1 ? C28 AM5 1 A 1 HETATM 32 C C29 AM5 . . . B 2 28.752 -2.017 39.988 1 27.45 ? C29 AM5 1 A 1 HETATM 33 C C30 AM5 . . . B 2 27.645 -2.746 39.485 1 27 ? C30 AM5 1 A 1 HETATM 34 C C5 AM5 . . . B 2 26.347 -2.107 39.512 1 23.92 ? C5 AM5 1 A 1 HETATM 35 C C31 AM5 . . . B 2 26.146 -0.76 40.029 1 26.78 ? C31 AM5 1 A 1 HETATM 36 C C1 AM5 . . . B 2 30.647 0.691 43.041 1 33.48 ? C1 AM5 1 A 1 HETATM 37 N N2 AM5 . . . B 2 31.921 0.493 42.331 1 34.12 ? N2 AM5 1 A 1 HETATM 38 C C3 AM5 . . . B 2 31.946 -0.524 41.281 1 34.44 ? C3 AM5 1 A 1 HETATM 39 C C4 AM5 . . . B 2 30.891 -0.219 40.241 1 33.14 ? C4 AM5 1 A 1 HETATM 40 N N5 AM5 . . . B 2 29.588 -0.057 40.924 1 30.98 ? N5 AM5 1 A 1 HETATM 41 C C6 AM5 . . . B 2 29.489 0.809 42.085 1 32.54 ? C6 AM5 1 A 1 HETATM 42 C C2 AM5 . . . B 2 32.863 -0.086 43.283 1 35.13 ? C2 AM5 1 A 1 HETATM 43 O O1 AM5 . . . B 2 16.319 1.025 38.836 1 19.52 ? O1 AM5 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #