data_3BYX # _model_server_result.job_id VQ0XM7afCKUst_Wx69lmdw _model_server_result.datetime_utc '2024-11-23 20:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3byx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":318}' # _entry.id 3BYX # _exptl.entry_id 3BYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.349 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-hydroxybiphenyl-3-yl)-4-methyl-1H-isoindole-1,3(2H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BYX _cell.length_a 77.012 _cell.length_b 77.012 _cell.length_c 213.97 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -35.661667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H15 N O3' _chem_comp.formula_weight 329.349 _chem_comp.id C00 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-hydroxybiphenyl-3-yl)-4-methyl-1H-isoindole-1,3(2H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C00 doub 70 n y C1 C10 C00 sing 71 n y C2 C4 C00 sing 72 n y C6 C8 C00 sing 73 n y C6 C21 C00 sing 74 n n C6 C4 C00 doub 75 n y C8 C15 C00 sing 76 n n C8 C10 C00 doub 77 n y C13 C10 C00 sing 78 n n C15 N19 C00 sing 79 n n C15 O17 C00 doub 80 n n C26 C28 C00 doub 81 n y C26 C36 C00 sing 82 n y C26 N19 C00 sing 83 n n C28 C30 C00 sing 84 n y C30 C32 C00 doub 85 n y C30 C45 C00 sing 86 n y C32 C34 C00 sing 87 n y C34 C36 C00 doub 88 n y C36 O39 C00 sing 89 n n C41 C46 C00 doub 90 n y C41 C42 C00 sing 91 n y O23 C21 C00 doub 92 n n C21 N19 C00 sing 93 n n C45 C46 C00 sing 94 n y C45 C44 C00 doub 95 n y C44 C43 C00 sing 96 n y C43 C42 C00 doub 97 n y C1 H1 C00 sing 98 n n C2 H2 C00 sing 99 n n C13 H13 C00 sing 100 n n C13 H13A C00 sing 101 n n C13 H13B C00 sing 102 n n C28 H28 C00 sing 103 n n C32 H32 C00 sing 104 n n C34 H34 C00 sing 105 n n C41 H41 C00 sing 106 n n C4 H4 C00 sing 107 n n O39 HO39 C00 sing 108 n n C46 H46 C00 sing 109 n n C44 H44 C00 sing 110 n n C43 H43 C00 sing 111 n n C42 H42 C00 sing 112 n n # _atom_sites.entry_id 3BYX _atom_sites.fract_transf_matrix[1][1] 0.012985 _atom_sites.fract_transf_matrix[1][2] 0.007497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UMP A 1 317 317 UMP UMP . C 3 C00 A 1 318 1 C00 C20 . D 4 HOH A 1 319 1 HOH HOH . D 4 HOH A 2 320 2 HOH HOH . D 4 HOH A 3 321 3 HOH HOH . D 4 HOH A 4 322 4 HOH HOH . D 4 HOH A 5 323 5 HOH HOH . D 4 HOH A 6 324 6 HOH HOH . D 4 HOH A 7 325 8 HOH HOH . D 4 HOH A 8 326 9 HOH HOH . D 4 HOH A 9 327 10 HOH HOH . D 4 HOH A 10 328 11 HOH HOH . D 4 HOH A 11 329 13 HOH HOH . D 4 HOH A 12 330 14 HOH HOH . D 4 HOH A 13 331 15 HOH HOH . D 4 HOH A 14 332 16 HOH HOH . D 4 HOH A 15 333 18 HOH HOH . D 4 HOH A 16 334 19 HOH HOH . D 4 HOH A 17 335 20 HOH HOH . D 4 HOH A 18 336 21 HOH HOH . D 4 HOH A 19 337 22 HOH HOH . D 4 HOH A 20 338 24 HOH HOH . D 4 HOH A 21 339 25 HOH HOH . D 4 HOH A 22 340 26 HOH HOH . D 4 HOH A 23 341 27 HOH HOH . D 4 HOH A 24 342 28 HOH HOH . D 4 HOH A 25 343 29 HOH HOH . D 4 HOH A 26 344 30 HOH HOH . D 4 HOH A 27 345 32 HOH HOH . D 4 HOH A 28 346 33 HOH HOH . D 4 HOH A 29 347 34 HOH HOH . D 4 HOH A 30 348 36 HOH HOH . D 4 HOH A 31 349 37 HOH HOH . D 4 HOH A 32 350 39 HOH HOH . D 4 HOH A 33 351 40 HOH HOH . D 4 HOH A 34 352 41 HOH HOH . D 4 HOH A 35 353 42 HOH HOH . D 4 HOH A 36 354 43 HOH HOH . D 4 HOH A 37 355 44 HOH HOH . D 4 HOH A 38 356 45 HOH HOH . D 4 HOH A 39 357 46 HOH HOH . D 4 HOH A 40 358 47 HOH HOH . D 4 HOH A 41 359 48 HOH HOH . D 4 HOH A 42 360 49 HOH HOH . D 4 HOH A 43 361 50 HOH HOH . D 4 HOH A 44 362 51 HOH HOH . D 4 HOH A 45 363 52 HOH HOH . D 4 HOH A 46 364 54 HOH HOH . D 4 HOH A 47 365 55 HOH HOH . D 4 HOH A 48 366 56 HOH HOH . D 4 HOH A 49 367 57 HOH HOH . D 4 HOH A 50 368 58 HOH HOH . D 4 HOH A 51 369 59 HOH HOH . D 4 HOH A 52 370 60 HOH HOH . D 4 HOH A 53 371 61 HOH HOH . D 4 HOH A 54 372 62 HOH HOH . D 4 HOH A 55 373 63 HOH HOH . D 4 HOH A 56 374 64 HOH HOH . D 4 HOH A 57 375 65 HOH HOH . D 4 HOH A 58 376 66 HOH HOH . D 4 HOH A 59 377 67 HOH HOH . D 4 HOH A 60 378 68 HOH HOH . D 4 HOH A 61 379 69 HOH HOH . D 4 HOH A 62 380 70 HOH HOH . D 4 HOH A 63 381 71 HOH HOH . D 4 HOH A 64 382 75 HOH HOH . D 4 HOH A 65 383 76 HOH HOH . D 4 HOH A 66 384 77 HOH HOH . D 4 HOH A 67 385 78 HOH HOH . D 4 HOH A 68 386 80 HOH HOH . D 4 HOH A 69 387 83 HOH HOH . D 4 HOH A 70 388 84 HOH HOH . D 4 HOH A 71 389 87 HOH HOH . D 4 HOH A 72 390 88 HOH HOH . D 4 HOH A 73 391 90 HOH HOH . D 4 HOH A 74 392 91 HOH HOH . D 4 HOH A 75 393 93 HOH HOH . D 4 HOH A 76 394 94 HOH HOH . D 4 HOH A 77 395 96 HOH HOH . D 4 HOH A 78 396 97 HOH HOH . D 4 HOH A 79 397 98 HOH HOH . D 4 HOH A 80 398 99 HOH HOH . D 4 HOH A 81 399 100 HOH HOH . D 4 HOH A 82 400 101 HOH HOH . D 4 HOH A 83 401 102 HOH HOH . D 4 HOH A 84 402 103 HOH HOH . D 4 HOH A 85 403 104 HOH HOH . D 4 HOH A 86 404 105 HOH HOH . D 4 HOH A 87 405 106 HOH HOH . D 4 HOH A 88 406 107 HOH HOH . D 4 HOH A 89 407 108 HOH HOH . D 4 HOH A 90 408 109 HOH HOH . D 4 HOH A 91 409 110 HOH HOH . D 4 HOH A 92 410 111 HOH HOH . D 4 HOH A 93 411 112 HOH HOH . D 4 HOH A 94 412 113 HOH HOH . D 4 HOH A 95 413 114 HOH HOH . D 4 HOH A 96 414 115 HOH HOH . D 4 HOH A 97 415 116 HOH HOH . D 4 HOH A 98 416 117 HOH HOH . D 4 HOH A 99 417 119 HOH HOH . D 4 HOH A 100 418 121 HOH HOH . D 4 HOH A 101 419 122 HOH HOH . D 4 HOH A 102 420 125 HOH HOH . D 4 HOH A 103 421 126 HOH HOH . D 4 HOH A 104 422 127 HOH HOH . D 4 HOH A 105 423 128 HOH HOH . D 4 HOH A 106 424 129 HOH HOH . D 4 HOH A 107 425 130 HOH HOH . D 4 HOH A 108 426 131 HOH HOH . D 4 HOH A 109 427 132 HOH HOH . D 4 HOH A 110 428 133 HOH HOH . D 4 HOH A 111 429 134 HOH HOH . D 4 HOH A 112 430 135 HOH HOH . D 4 HOH A 113 431 137 HOH HOH . D 4 HOH A 114 432 138 HOH HOH . D 4 HOH A 115 433 139 HOH HOH . D 4 HOH A 116 434 140 HOH HOH . D 4 HOH A 117 435 141 HOH HOH . D 4 HOH A 118 436 142 HOH HOH . D 4 HOH A 119 437 143 HOH HOH . D 4 HOH A 120 438 144 HOH HOH . D 4 HOH A 121 439 146 HOH HOH . D 4 HOH A 122 440 147 HOH HOH . D 4 HOH A 123 441 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C00 . A . C 3 -32.174 38.26 -10.049 0.3 40.11 ? C1 C00 318 A 1 HETATM 2 C C1 C00 . B . C 3 -28.376 35.374 -9.464 0.3 55.85 ? C1 C00 318 A 1 HETATM 3 C C2 C00 . A . C 3 -31.739 39.47 -9.522 0.3 40.18 ? C2 C00 318 A 1 HETATM 4 C C2 C00 . B . C 3 -27.218 34.919 -10.105 0.3 55.83 ? C2 C00 318 A 1 HETATM 5 C C6 C00 . A . C 3 -29.709 38.454 -8.818 0.3 40.23 ? C6 C00 318 A 1 HETATM 6 C C6 C00 . B . C 3 -27.313 36.785 -11.599 0.3 55.69 ? C6 C00 318 A 1 HETATM 7 C C8 C00 . A . C 3 -30.143 37.231 -9.331 0.3 40.17 ? C8 C00 318 A 1 HETATM 8 C C8 C00 . B . C 3 -28.473 37.25 -10.964 0.3 55.78 ? C8 C00 318 A 1 HETATM 9 C C13 C00 . A . C 3 -31.899 35.825 -10.522 0.3 40.42 ? C13 C00 318 A 1 HETATM 10 C C13 C00 . B . C 3 -30.259 37.017 -9.181 0.3 55.67 ? C13 C00 318 A 1 HETATM 11 C C15 C00 . A . C 3 -29.013 36.325 -9.02 0.3 40.54 ? C15 C00 318 A 1 HETATM 12 C C15 C00 . B . C 3 -28.8 38.493 -11.719 0.3 55.91 ? C15 C00 318 A 1 HETATM 13 C C26 C00 . A . C 3 -26.854 36.473 -7.966 0.3 40.09 ? C26 C00 318 A 1 HETATM 14 C C26 C00 . B . C 3 -27.892 39.712 -13.543 0.3 55.87 ? C26 C00 318 A 1 HETATM 15 C C28 C00 . A . C 3 -25.846 37.265 -7.375 0.3 39.88 ? C28 C00 318 A 1 HETATM 16 C C28 C00 . B . C 3 -28.903 39.972 -14.484 0.3 56.07 ? C28 C00 318 A 1 HETATM 17 C C30 C00 . A . C 3 -24.605 36.764 -6.967 0.3 39.73 ? C30 C00 318 A 1 HETATM 18 C C30 C00 . B . C 3 -28.87 41.068 -15.356 0.3 56.03 ? C30 C00 318 A 1 HETATM 19 C C32 C00 . A . C 3 -24.345 35.426 -7.145 0.3 39.91 ? C32 C00 318 A 1 HETATM 20 C C32 C00 . B . C 3 -27.798 41.952 -15.298 0.3 55.97 ? C32 C00 318 A 1 HETATM 21 C C34 C00 . A . C 3 -25.294 34.616 -7.725 0.3 39.6 ? C34 C00 318 A 1 HETATM 22 C C34 C00 . B . C 3 -26.784 41.731 -14.378 0.3 55.78 ? C34 C00 318 A 1 HETATM 23 C C36 C00 . A . C 3 -26.509 35.122 -8.124 0.3 39.91 ? C36 C00 318 A 1 HETATM 24 C C36 C00 . B . C 3 -26.843 40.633 -13.522 0.3 55.83 ? C36 C00 318 A 1 HETATM 25 C C41 C00 . A . C 3 -21.148 37.944 -5.974 0.3 39.17 ? C41 C00 318 A 1 HETATM 26 C C41 C00 . B . C 3 -31.136 42.839 -17.825 0.3 56.11 ? C41 C00 318 A 1 HETATM 27 O O23 C00 . A . C 3 -27.772 39.211 -7.699 0.3 40.21 ? O23 C00 318 A 1 HETATM 28 O O23 C00 . B . C 3 -26.006 37.557 -13.41 0.3 55.62 ? O23 C00 318 A 1 HETATM 29 C C21 C00 . A . C 3 -28.44 38.259 -8.264 0.3 40.5 ? C21 C00 318 A 1 HETATM 30 C C21 C00 . B . C 3 -27.016 37.685 -12.624 0.3 55.64 ? C21 C00 318 A 1 HETATM 31 C C4 C00 . A . C 3 -30.498 39.588 -8.915 0.3 40.27 ? C4 C00 318 A 1 HETATM 32 C C4 C00 . B . C 3 -26.674 35.622 -11.183 0.3 55.69 ? C4 C00 318 A 1 HETATM 33 N N19 C00 . A . C 3 -28.039 36.983 -8.375 0.3 40.32 ? N19 C00 318 A 1 HETATM 34 N N19 C00 . B . C 3 -27.91 38.673 -12.691 0.3 55.85 ? N19 C00 318 A 1 HETATM 35 O O17 C00 . A . C 3 -29.021 35.08 -9.336 0.3 40.48 ? O17 C00 318 A 1 HETATM 36 O O17 C00 . B . C 3 -29.805 39.261 -11.474 0.3 55.86 ? O17 C00 318 A 1 HETATM 37 C C10 C00 . A . C 3 -31.386 37.122 -9.951 0.3 40.23 ? C10 C00 318 A 1 HETATM 38 C C10 C00 . B . C 3 -29.014 36.544 -9.888 0.3 55.83 ? C10 C00 318 A 1 HETATM 39 O O39 C00 . A . C 3 -27.355 34.208 -8.681 0.3 39.6 ? O39 C00 318 A 1 HETATM 40 O O39 C00 . B . C 3 -25.827 40.446 -12.633 0.3 55.94 ? O39 C00 318 A 1 HETATM 41 C C45 C00 . A . C 3 -23.522 37.564 -6.319 0.3 39.72 ? C45 C00 318 A 1 HETATM 42 C C45 C00 . B . C 3 -29.967 41.314 -16.341 0.3 56.05 ? C45 C00 318 A 1 HETATM 43 C C46 C00 . A . C 3 -22.185 37.236 -6.578 0.3 39.19 ? C46 C00 318 A 1 HETATM 44 C C46 C00 . B . C 3 -30.115 42.585 -16.907 0.3 56.01 ? C46 C00 318 A 1 HETATM 45 C C44 C00 . A . C 3 -23.817 38.596 -5.423 0.3 39.75 ? C44 C00 318 A 1 HETATM 46 C C44 C00 . B . C 3 -30.862 40.299 -16.696 0.3 55.91 ? C44 C00 318 A 1 HETATM 47 C C43 C00 . A . C 3 -22.778 39.307 -4.819 0.3 40 ? C43 C00 318 A 1 HETATM 48 C C43 C00 . B . C 3 -31.883 40.554 -17.617 0.3 55.84 ? C43 C00 318 A 1 HETATM 49 C C42 C00 . A . C 3 -21.448 38.983 -5.094 0.3 39.48 ? C42 C00 318 A 1 HETATM 50 C C42 C00 . B . C 3 -32.022 41.822 -18.181 0.3 55.99 ? C42 C00 318 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #