data_3BYZ # _model_server_result.job_id hrCCkQ9P0ZDxMo3ZMuC5eA _model_server_result.datetime_utc '2024-10-14 14:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3byz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3BYZ # _exptl.entry_id 3BYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BYZ _cell.length_a 49.036 _cell.length_b 138.48 _cell.length_c 155.022 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 281 n n PA O2A NDP sing 282 n n PA O5B NDP sing 283 n n PA O3 NDP sing 284 n n O2A HOA2 NDP sing 285 n n O5B C5B NDP sing 286 n n C5B C4B NDP sing 287 n n C5B H51A NDP sing 288 n n C5B H52A NDP sing 289 n n C4B O4B NDP sing 290 n n C4B C3B NDP sing 291 n n C4B H4B NDP sing 292 n n O4B C1B NDP sing 293 n n C3B O3B NDP sing 294 n n C3B C2B NDP sing 295 n n C3B H3B NDP sing 296 n n O3B HO3A NDP sing 297 n n C2B O2B NDP sing 298 n n C2B C1B NDP sing 299 n n C2B H2B NDP sing 300 n n O2B P2B NDP sing 301 n n C1B N9A NDP sing 302 n n C1B H1B NDP sing 303 n n N9A C8A NDP sing 304 n y N9A C4A NDP sing 305 n y C8A N7A NDP doub 306 n y C8A H8A NDP sing 307 n n N7A C5A NDP sing 308 n y C5A C6A NDP sing 309 n y C5A C4A NDP doub 310 n y C6A N6A NDP sing 311 n n C6A N1A NDP doub 312 n y N6A H61A NDP sing 313 n n N6A H62A NDP sing 314 n n N1A C2A NDP sing 315 n y C2A N3A NDP doub 316 n y C2A H2A NDP sing 317 n n N3A C4A NDP sing 318 n y O3 PN NDP sing 319 n n PN O1N NDP doub 320 n n PN O2N NDP sing 321 n n PN O5D NDP sing 322 n n O2N H21N NDP sing 323 n n O5D C5D NDP sing 324 n n C5D C4D NDP sing 325 n n C5D H51N NDP sing 326 n n C5D H52N NDP sing 327 n n C4D O4D NDP sing 328 n n C4D C3D NDP sing 329 n n C4D H4D NDP sing 330 n n O4D C1D NDP sing 331 n n C3D O3D NDP sing 332 n n C3D C2D NDP sing 333 n n C3D H3D NDP sing 334 n n O3D HO3N NDP sing 335 n n C2D O2D NDP sing 336 n n C2D C1D NDP sing 337 n n C2D H2D NDP sing 338 n n O2D HO2N NDP sing 339 n n C1D N1N NDP sing 340 n n C1D H1D NDP sing 341 n n N1N C2N NDP sing 342 n n N1N C6N NDP sing 343 n n C2N C3N NDP doub 344 n n C2N H2N NDP sing 345 n n C3N C7N NDP sing 346 n n C3N C4N NDP sing 347 n n C7N O7N NDP doub 348 n n C7N N7N NDP sing 349 n n N7N H71N NDP sing 350 n n N7N H72N NDP sing 351 n n C4N C5N NDP sing 352 n n C4N H41N NDP sing 353 n n C4N H42N NDP sing 354 n n C5N C6N NDP doub 355 n n C5N H5N NDP sing 356 n n C6N H6N NDP sing 357 n n P2B O1X NDP doub 358 n n P2B O2X NDP sing 359 n n P2B O3X NDP sing 360 n n O2X HOP2 NDP sing 361 n n O3X HOP3 NDP sing 362 n n # _atom_sites.entry_id 3BYZ _atom_sites.fract_transf_matrix[1][1] 0.020393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 501 501 NDP NDP . F 3 H11 A 1 601 601 H11 LIG . G 2 NDP B 1 502 502 NDP NDP . H 3 H11 B 1 602 602 H11 LIG . I 2 NDP C 1 503 503 NDP NDP . J 3 H11 C 1 604 604 H11 LIG . K 2 NDP D 1 504 504 NDP NDP . L 3 H11 D 1 603 603 H11 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 42.82 -6.935 147.424 1 32.64 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . E 2 43.368 -8.161 148.028 1 32.12 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . E 2 43.742 -5.85 147.016 1 30.29 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . E 2 41.897 -7.418 146.181 1 31.14 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . E 2 41.988 -6.809 144.904 1 31 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . E 2 41.453 -7.752 143.848 1 32.84 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . E 2 41.079 -6.825 142.836 1 33.35 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . E 2 42.633 -8.609 143.272 1 34.34 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . E 2 42.24 -9.954 142.938 1 32.82 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . E 2 43.033 -7.84 142.024 1 34.73 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . E 2 43.652 -8.645 140.981 1 35.21 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . E 2 41.689 -7.266 141.587 1 32.64 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . E 2 41.835 -6.037 140.773 1 31.82 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . E 2 42.554 -4.967 141.097 1 31.12 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . E 2 42.416 -4.071 140.105 1 31.85 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . E 2 41.611 -4.586 139.18 1 29.81 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . E 2 41.145 -4.134 137.966 1 32.83 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . E 2 41.496 -2.908 137.547 1 34.05 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . E 2 40.346 -4.914 137.224 1 31.43 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . E 2 40.012 -6.103 137.672 1 30.74 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . E 2 40.465 -6.548 138.816 1 29.85 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . E 2 41.248 -5.821 139.594 1 29.32 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . E 2 41.667 -6.237 148.381 1 33.24 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . E 2 40.692 -7.073 149.434 1 31.86 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . E 2 41.21 -6.638 150.738 1 32.91 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . E 2 40.518 -8.504 149.11 1 31.34 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . E 2 39.263 -6.429 149.064 1 31.61 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . E 2 38.144 -7.101 148.374 1 30.34 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . E 2 36.785 -6.322 148.619 1 28.21 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . E 2 36.613 -6.061 150.019 1 28.46 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . E 2 36.834 -4.928 148.015 1 27.59 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . E 2 35.575 -4.67 147.439 1 29.85 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . E 2 37.043 -3.999 149.179 1 25.82 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . E 2 36.364 -2.791 148.927 1 29.08 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . E 2 36.274 -4.706 150.225 1 27.54 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . E 2 36.796 -4.292 151.554 1 28.51 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . E 2 37.978 -4.851 152.084 1 29.65 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . E 2 38.416 -4.421 153.348 1 30.82 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . E 2 39.712 -4.975 153.976 1 30.98 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . E 2 39.93 -4.749 155.167 1 31.51 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . E 2 40.516 -5.721 153.193 1 31.09 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . E 2 37.674 -3.485 154.083 1 28.51 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . E 2 36.483 -2.948 153.585 1 27.96 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . E 2 36.051 -3.357 152.336 1 28.41 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . E 2 44.717 -7.877 140.016 1 32.88 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . E 2 45.71 -9.087 139.818 1 28.1 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . E 2 45.323 -6.684 140.966 1 32.21 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . E 2 44.127 -7.186 138.885 1 31.59 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 642 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #