data_3BYZ
#
_model_server_result.job_id            65LUhMogE2sDr0FH25KFMQ 
_model_server_result.datetime_utc      '2024-10-14 14:16:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3byz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    3BYZ 
#
_exptl.entry_id    3BYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BYZ 
_cell.length_a            49.036 
_cell.length_b            138.48 
_cell.length_c            155.022 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 281 n n 
PA O2A NDP sing 282 n n 
PA O5B NDP sing 283 n n 
PA O3 NDP sing 284 n n 
O2A HOA2 NDP sing 285 n n 
O5B C5B NDP sing 286 n n 
C5B C4B NDP sing 287 n n 
C5B H51A NDP sing 288 n n 
C5B H52A NDP sing 289 n n 
C4B O4B NDP sing 290 n n 
C4B C3B NDP sing 291 n n 
C4B H4B NDP sing 292 n n 
O4B C1B NDP sing 293 n n 
C3B O3B NDP sing 294 n n 
C3B C2B NDP sing 295 n n 
C3B H3B NDP sing 296 n n 
O3B HO3A NDP sing 297 n n 
C2B O2B NDP sing 298 n n 
C2B C1B NDP sing 299 n n 
C2B H2B NDP sing 300 n n 
O2B P2B NDP sing 301 n n 
C1B N9A NDP sing 302 n n 
C1B H1B NDP sing 303 n n 
N9A C8A NDP sing 304 n y 
N9A C4A NDP sing 305 n y 
C8A N7A NDP doub 306 n y 
C8A H8A NDP sing 307 n n 
N7A C5A NDP sing 308 n y 
C5A C6A NDP sing 309 n y 
C5A C4A NDP doub 310 n y 
C6A N6A NDP sing 311 n n 
C6A N1A NDP doub 312 n y 
N6A H61A NDP sing 313 n n 
N6A H62A NDP sing 314 n n 
N1A C2A NDP sing 315 n y 
C2A N3A NDP doub 316 n y 
C2A H2A NDP sing 317 n n 
N3A C4A NDP sing 318 n y 
O3 PN NDP sing 319 n n 
PN O1N NDP doub 320 n n 
PN O2N NDP sing 321 n n 
PN O5D NDP sing 322 n n 
O2N H21N NDP sing 323 n n 
O5D C5D NDP sing 324 n n 
C5D C4D NDP sing 325 n n 
C5D H51N NDP sing 326 n n 
C5D H52N NDP sing 327 n n 
C4D O4D NDP sing 328 n n 
C4D C3D NDP sing 329 n n 
C4D H4D NDP sing 330 n n 
O4D C1D NDP sing 331 n n 
C3D O3D NDP sing 332 n n 
C3D C2D NDP sing 333 n n 
C3D H3D NDP sing 334 n n 
O3D HO3N NDP sing 335 n n 
C2D O2D NDP sing 336 n n 
C2D C1D NDP sing 337 n n 
C2D H2D NDP sing 338 n n 
O2D HO2N NDP sing 339 n n 
C1D N1N NDP sing 340 n n 
C1D H1D NDP sing 341 n n 
N1N C2N NDP sing 342 n n 
N1N C6N NDP sing 343 n n 
C2N C3N NDP doub 344 n n 
C2N H2N NDP sing 345 n n 
C3N C7N NDP sing 346 n n 
C3N C4N NDP sing 347 n n 
C7N O7N NDP doub 348 n n 
C7N N7N NDP sing 349 n n 
N7N H71N NDP sing 350 n n 
N7N H72N NDP sing 351 n n 
C4N C5N NDP sing 352 n n 
C4N H41N NDP sing 353 n n 
C4N H42N NDP sing 354 n n 
C5N C6N NDP doub 355 n n 
C5N H5N NDP sing 356 n n 
C6N H6N NDP sing 357 n n 
P2B O1X NDP doub 358 n n 
P2B O2X NDP sing 359 n n 
P2B O3X NDP sing 360 n n 
O2X HOP2 NDP sing 361 n n 
O3X HOP3 NDP sing 362 n n 
#
_atom_sites.entry_id                     3BYZ 
_atom_sites.fract_transf_matrix[1][1]    0.020393 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006451 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 501 501 NDP NDP . 
F 3 H11 A 1 601 601 H11 LIG . 
G 2 NDP B 1 502 502 NDP NDP . 
H 3 H11 B 1 602 602 H11 LIG . 
I 2 NDP C 1 503 503 NDP NDP . 
J 3 H11 C 1 604 604 H11 LIG . 
K 2 NDP D 1 504 504 NDP NDP . 
L 3 H11 D 1 603 603 H11 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . G 2 15.847 21.382 137.506 1 29.27 ? PA NDP 502 B 1 
HETATM 2 O O1A NDP . . . G 2 14.739 22.319 137.684 1 32 ? O1A NDP 502 B 1 
HETATM 3 O O2A NDP . . . G 2 15.777 20.322 136.459 1 29.08 ? O2A NDP 502 B 1 
HETATM 4 O O5B NDP . . . G 2 17.081 22.288 137.322 1 26.86 ? O5B NDP 502 B 1 
HETATM 5 C C5B NDP . . . G 2 18.06 21.684 136.509 1 28.75 ? C5B NDP 502 B 1 
HETATM 6 C C4B NDP . . . G 2 19.226 22.657 136.23 1 32.07 ? C4B NDP 502 B 1 
HETATM 7 O O4B NDP . . . G 2 20.552 22.028 135.894 1 34.71 ? O4B NDP 502 B 1 
HETATM 8 C C3B NDP . . . G 2 18.865 23.52 135.027 1 31.55 ? C3B NDP 502 B 1 
HETATM 9 O O3B NDP . . . G 2 19.518 24.77 135.269 1 30.72 ? O3B NDP 502 B 1 
HETATM 10 C C2B NDP . . . G 2 19.537 22.814 133.848 1 32.43 ? C2B NDP 502 B 1 
HETATM 11 O O2B NDP . . . G 2 19.955 23.837 132.941 1 32.55 ? O2B NDP 502 B 1 
HETATM 12 C C1B NDP . . . G 2 20.811 22.281 134.468 1 32.31 ? C1B NDP 502 B 1 
HETATM 13 N N9A NDP . . . G 2 21.416 21.222 133.751 1 31.36 ? N9A NDP 502 B 1 
HETATM 14 C C8A NDP . . . G 2 20.912 20.094 133.289 1 31.92 ? C8A NDP 502 B 1 
HETATM 15 N N7A NDP . . . G 2 21.873 19.389 132.659 1 31.33 ? N7A NDP 502 B 1 
HETATM 16 C C5A NDP . . . G 2 22.994 20.084 132.755 1 31.53 ? C5A NDP 502 B 1 
HETATM 17 C C6A NDP . . . G 2 24.298 19.911 132.317 1 31.91 ? C6A NDP 502 B 1 
HETATM 18 N N6A NDP . . . G 2 24.625 18.823 131.678 1 33.31 ? N6A NDP 502 B 1 
HETATM 19 N N1A NDP . . . G 2 25.244 20.84 132.53 1 30.91 ? N1A NDP 502 B 1 
HETATM 20 C C2A NDP . . . G 2 24.902 21.935 133.204 1 32.39 ? C2A NDP 502 B 1 
HETATM 21 N N3A NDP . . . G 2 23.67 22.155 133.672 1 31.36 ? N3A NDP 502 B 1 
HETATM 22 C C4A NDP . . . G 2 22.702 21.242 133.453 1 32.51 ? C4A NDP 502 B 1 
HETATM 23 O O3 NDP . . . G 2 16.145 20.582 138.805 1 27.32 ? O3 NDP 502 B 1 
HETATM 24 P PN NDP . . . G 2 15.695 21.049 140.221 1 21.63 ? PN NDP 502 B 1 
HETATM 25 O O1N NDP . . . G 2 14.439 20.412 140.544 1 21.29 ? O1N NDP 502 B 1 
HETATM 26 O O2N NDP . . . G 2 15.842 22.52 140.277 1 27.37 ? O2N NDP 502 B 1 
HETATM 27 O O5D NDP . . . G 2 16.874 20.405 141.073 1 24.19 ? O5D NDP 502 B 1 
HETATM 28 C C5D NDP . . . G 2 18.033 21.196 141.437 1 25.4 ? C5D NDP 502 B 1 
HETATM 29 C C4D NDP . . . G 2 18.881 20.375 142.424 1 28.03 ? C4D NDP 502 B 1 
HETATM 30 O O4D NDP . . . G 2 17.893 19.976 143.393 1 28.44 ? O4D NDP 502 B 1 
HETATM 31 C C3D NDP . . . G 2 19.448 19.06 141.841 1 25.89 ? C3D NDP 502 B 1 
HETATM 32 O O3D NDP . . . G 2 20.779 18.814 142.321 1 18.65 ? O3D NDP 502 B 1 
HETATM 33 C C2D NDP . . . G 2 18.526 18.03 142.402 1 25.67 ? C2D NDP 502 B 1 
HETATM 34 O O2D NDP . . . G 2 19.277 16.791 142.522 1 27.53 ? O2D NDP 502 B 1 
HETATM 35 C C1D NDP . . . G 2 18.182 18.687 143.759 1 27.38 ? C1D NDP 502 B 1 
HETATM 36 N N1N NDP . . . G 2 16.877 18.139 144.235 1 29.31 ? N1N NDP 502 B 1 
HETATM 37 C C2N NDP . . . G 2 15.657 18.591 143.669 1 26.62 ? C2N NDP 502 B 1 
HETATM 38 C C3N NDP . . . G 2 14.468 18.01 144.092 1 26.59 ? C3N NDP 502 B 1 
HETATM 39 C C7N NDP . . . G 2 13.119 18.442 143.537 1 26.68 ? C7N NDP 502 B 1 
HETATM 40 O O7N NDP . . . G 2 12.104 17.86 143.902 1 27.6 ? O7N NDP 502 B 1 
HETATM 41 N N7N NDP . . . G 2 13.113 19.422 142.634 1 25.42 ? N7N NDP 502 B 1 
HETATM 42 C C4N NDP . . . G 2 14.484 16.981 145.034 1 28.98 ? C4N NDP 502 B 1 
HETATM 43 C C5N NDP . . . G 2 15.683 16.548 145.606 1 30.48 ? C5N NDP 502 B 1 
HETATM 44 C C6N NDP . . . G 2 16.894 17.11 145.21 1 28.17 ? C6N NDP 502 B 1 
HETATM 45 P P2B NDP . . . G 2 20.169 23.484 131.408 1 31.67 ? P2B NDP 502 B 1 
HETATM 46 O O1X NDP . . . G 2 19.841 24.887 130.635 1 30.28 ? O1X NDP 502 B 1 
HETATM 47 O O2X NDP . . . G 2 19.079 22.415 130.993 1 28.6 ? O2X NDP 502 B 1 
HETATM 48 O O3X NDP . . . G 2 21.563 23.042 131.2 1 34.35 ? O3X NDP 502 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           614 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#