data_3C03 # _model_server_result.job_id Dm2J4VRPEmUzfjJS-LFKyQ _model_server_result.datetime_utc '2024-11-24 19:07:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4}' # _entry.id 3C03 # _exptl.entry_id 3C03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Proline amino acid' _entity.formula_weight 115.13 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.69 _cell.angle_gamma 90 _cell.entry_id 3C03 _cell.length_a 36.111 _cell.length_b 55.478 _cell.length_c 50.448 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,C,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 53 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 261 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id SNN _struct_conn.ptnr2_label_seq_id 54 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id SNN _struct_conn.ptnr2_auth_seq_id 262 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.338 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id PRO _chem_comp.mon_nstd_flag y _chem_comp.name PROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PRO sing 260 n n N CD PRO sing 261 n n N H PRO sing 262 n n CA C PRO sing 263 n n CA CB PRO sing 264 n n CA HA PRO sing 265 n n C O PRO doub 266 n n C OXT PRO sing 267 n n CB CG PRO sing 268 n n CB HB2 PRO sing 269 n n CB HB3 PRO sing 270 n n CG CD PRO sing 271 n n CG HG2 PRO sing 272 n n CG HG3 PRO sing 273 n n CD HD2 PRO sing 274 n n CD HD3 PRO sing 275 n n OXT HXT PRO sing 276 n n # _atom_sites.entry_id 3C03 _atom_sites.fract_transf_matrix[1][1] 0.027692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009367 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PRO A 1 4 4 PRO PRO . E 5 HOH A 1 346 2 HOH HOH . E 5 HOH A 2 347 3 HOH HOH . E 5 HOH A 3 348 4 HOH HOH . E 5 HOH A 4 349 5 HOH HOH . E 5 HOH A 5 350 6 HOH HOH . E 5 HOH A 6 351 8 HOH HOH . E 5 HOH A 7 352 15 HOH HOH . E 5 HOH A 8 353 17 HOH HOH . E 5 HOH A 9 354 21 HOH HOH . E 5 HOH A 10 355 22 HOH HOH . E 5 HOH A 11 356 23 HOH HOH . E 5 HOH A 12 357 24 HOH HOH . E 5 HOH A 13 358 25 HOH HOH . E 5 HOH A 14 359 27 HOH HOH . E 5 HOH A 15 360 28 HOH HOH . E 5 HOH A 16 361 29 HOH HOH . E 5 HOH A 17 362 32 HOH HOH . E 5 HOH A 18 363 33 HOH HOH . E 5 HOH A 19 364 34 HOH HOH . E 5 HOH A 20 365 35 HOH HOH . E 5 HOH A 21 366 36 HOH HOH . E 5 HOH A 22 367 37 HOH HOH . E 5 HOH A 23 368 38 HOH HOH . E 5 HOH A 24 369 39 HOH HOH . E 5 HOH A 25 370 40 HOH HOH . E 5 HOH A 26 371 41 HOH HOH . E 5 HOH A 27 372 42 HOH HOH . E 5 HOH A 28 373 43 HOH HOH . E 5 HOH A 29 374 44 HOH HOH . E 5 HOH A 30 375 49 HOH HOH . E 5 HOH A 31 376 50 HOH HOH . E 5 HOH A 32 377 52 HOH HOH . E 5 HOH A 33 378 53 HOH HOH . E 5 HOH A 34 379 54 HOH HOH . E 5 HOH A 35 380 55 HOH HOH . E 5 HOH A 36 381 56 HOH HOH . E 5 HOH A 37 382 58 HOH HOH . E 5 HOH A 38 383 60 HOH HOH . E 5 HOH A 39 385 81 HOH HOH . E 5 HOH A 40 386 82 HOH HOH . E 5 HOH A 41 387 83 HOH HOH . E 5 HOH A 42 388 84 HOH HOH . F 5 HOH B 1 47 47 HOH HOH . F 5 HOH B 2 64 64 HOH HOH . F 5 HOH B 3 66 66 HOH HOH . F 5 HOH B 4 80 80 HOH HOH . G 5 HOH C 1 18 18 HOH HOH . G 5 HOH C 2 45 45 HOH HOH . G 5 HOH C 3 46 46 HOH HOH . G 5 HOH C 4 48 48 HOH HOH . G 5 HOH C 5 68 68 HOH HOH . G 5 HOH C 6 69 69 HOH HOH . G 5 HOH C 7 70 70 HOH HOH . G 5 HOH C 8 71 71 HOH HOH . G 5 HOH C 9 72 72 HOH HOH . G 5 HOH C 10 73 73 HOH HOH . G 5 HOH C 11 74 74 HOH HOH . G 5 HOH C 12 75 75 HOH HOH . G 5 HOH C 13 76 76 HOH HOH . G 5 HOH C 14 77 77 HOH HOH . G 5 HOH C 15 78 78 HOH HOH . G 5 HOH C 16 79 79 HOH HOH . G 5 HOH C 17 384 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PRO . . . D 4 0.106 -5.782 8.568 1 80.18 ? N PRO 4 A 1 HETATM 2 C CA PRO . . . D 4 0.929 -5.401 7.437 1 80.37 ? CA PRO 4 A 1 HETATM 3 C C PRO . . . D 4 2.423 -5.576 7.668 1 80.74 ? C PRO 4 A 1 HETATM 4 O O PRO . . . D 4 3.206 -5.519 6.716 1 80.77 ? O PRO 4 A 1 HETATM 5 C CB PRO . . . D 4 0.575 -3.934 7.257 1 80.18 ? CB PRO 4 A 1 HETATM 6 C CG PRO . . . D 4 -0.893 -3.884 7.597 1 80.32 ? CG PRO 4 A 1 HETATM 7 C CD PRO . . . D 4 -1.16 -5.032 8.57 1 80.32 ? CD PRO 4 A 1 HETATM 8 O OXT PRO . . . D 4 2.877 -5.784 8.794 1 81.38 ? OXT PRO 4 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #