data_3C09
#
_model_server_result.job_id            f-Hx0tC-IU3cmf7910WBgg 
_model_server_result.datetime_utc      '2024-11-30 00:29:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":3371}' 
#
_entry.id    3C09 
#
_exptl.entry_id    3C09 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.49 
_cell.angle_gamma         90 
_cell.entry_id            3C09 
_cell.length_a            141.073 
_cell.length_b            205.035 
_cell.length_c            81.577 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,O,P,Q,R,S 1 1 
C,D,E,G,H,I,J,K,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
disulf ? disulf2 A SG CYS 133 L CYS 133 1_555 A SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
disulf ? disulf4 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
disulf ? disulf5 C SG CYS 7 A CYS 313 1_555 C SG CYS 32 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
disulf ? disulf6 C SG CYS 140 A CYS 446 1_555 C SG CYS 169 A CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
disulf ? disulf7 C SG CYS 180 A CYS 486 1_555 C SG CYS 193 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
disulf ? disulf8 D SG CYS 23 B CYS 23 1_555 D SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
disulf ? disulf9 E SG CYS 22 C CYS 22 1_555 E SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
disulf ? disulf10 E SG CYS 148 C CYS 148 1_555 E SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
disulf ? disulf11 F SG CYS 7 D CYS 313 1_555 F SG CYS 32 D CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
disulf ? disulf12 F SG CYS 140 D CYS 446 1_555 F SG CYS 169 D CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
disulf ? disulf13 F SG CYS 180 D CYS 486 1_555 F SG CYS 193 D CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 283 n n 
C1 O1 NAG sing 284 n n 
C1 O5 NAG sing 285 n n 
C1 H1 NAG sing 286 n n 
C2 C3 NAG sing 287 n n 
C2 N2 NAG sing 288 n n 
C2 H2 NAG sing 289 n n 
C3 C4 NAG sing 290 n n 
C3 O3 NAG sing 291 n n 
C3 H3 NAG sing 292 n n 
C4 C5 NAG sing 293 n n 
C4 O4 NAG sing 294 n n 
C4 H4 NAG sing 295 n n 
C5 C6 NAG sing 296 n n 
C5 O5 NAG sing 297 n n 
C5 H5 NAG sing 298 n n 
C6 O6 NAG sing 299 n n 
C6 H61 NAG sing 300 n n 
C6 H62 NAG sing 301 n n 
C7 C8 NAG sing 302 n n 
C7 N2 NAG sing 303 n n 
C7 O7 NAG doub 304 n n 
C8 H81 NAG sing 305 n n 
C8 H82 NAG sing 306 n n 
C8 H83 NAG sing 307 n n 
N2 HN2 NAG sing 308 n n 
O1 HO1 NAG sing 309 n n 
O3 HO3 NAG sing 310 n n 
O4 HO4 NAG sing 311 n n 
O6 HO6 NAG sing 312 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3C09 
_atom_sites.fract_transf_matrix[1][1]    0.007089 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003688 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004877 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013819 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 3281 3281 NAG NAG . 
H 4 NAG A 1 3282 3282 NAG NAG . 
I 5 BMA A 1 3283 3283 BMA BMA . 
J 6 MAN A 1 3284 3284 MAN MAN . 
K 4 NAG A 1 3371 3371 NAG NAG . 
L 4 NAG A 1 3891 3891 NAG NAG . 
M 4 NAG A 1 4201 4201 NAG NAG . 
N 4 NAG A 1 4202 4202 NAG NAG . 
O 4 NAG D 1 3281 3281 NAG NAG . 
P 4 NAG D 1 3282 3282 NAG NAG . 
Q 5 BMA D 1 3283 3283 BMA BMA . 
R 4 NAG D 1 3371 3371 NAG NAG . 
S 4 NAG D 1 3891 3891 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . R 4 -25.243 20.978 -48.275 1 106.44 ? C1 NAG 3371 D 1 
HETATM 2 C C2 NAG . . . R 4 -24.69 22.407 -48.409 1 106.25 ? C2 NAG 3371 D 1 
HETATM 3 C C3 NAG . . . R 4 -25.791 23.455 -48.585 1 106.43 ? C3 NAG 3371 D 1 
HETATM 4 C C4 NAG . . . R 4 -26.856 23.003 -49.59 1 106.75 ? C4 NAG 3371 D 1 
HETATM 5 C C5 NAG . . . R 4 -27.405 21.621 -49.216 1 106.63 ? C5 NAG 3371 D 1 
HETATM 6 C C6 NAG . . . R 4 -28.416 21.12 -50.247 1 106.25 ? C6 NAG 3371 D 1 
HETATM 7 C C7 NAG . . . R 4 -22.572 22.589 -47.184 1 104.71 ? C7 NAG 3371 D 1 
HETATM 8 C C8 NAG . . . R 4 -21.775 23.781 -46.742 1 104.57 ? C8 NAG 3371 D 1 
HETATM 9 N N2 NAG . . . R 4 -23.897 22.742 -47.236 1 105.32 ? N2 NAG 3371 D 1 
HETATM 10 O O3 NAG . . . R 4 -25.207 24.672 -48.995 1 106.19 ? O3 NAG 3371 D 1 
HETATM 11 O O4 NAG . . . R 4 -27.901 23.954 -49.633 1 107.23 ? O4 NAG 3371 D 1 
HETATM 12 O O5 NAG . . . R 4 -26.353 20.67 -49.115 1 106.9 ? O5 NAG 3371 D 1 
HETATM 13 O O6 NAG . . . R 4 -29.316 20.214 -49.625 1 106.08 ? O6 NAG 3371 D 1 
HETATM 14 O O7 NAG . . . R 4 -21.998 21.539 -47.471 1 104.13 ? O7 NAG 3371 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#