data_3C0H # _model_server_result.job_id aQmZI3Rg-raizrnUXHI_Fg _model_server_result.datetime_utc '2024-10-12 12:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":338}' # _entry.id 3C0H # _exptl.entry_id 3C0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.57 _cell.angle_gamma 105.63 _cell.entry_id 3C0H _cell.length_a 55.387 _cell.length_b 59.675 _cell.length_c 61.086 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3C0H _atom_sites.fract_transf_matrix[1][1] 0.018055 _atom_sites.fract_transf_matrix[1][2] 0.00505 _atom_sites.fract_transf_matrix[1][3] 0.00544 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017401 _atom_sites.fract_transf_matrix[2][3] 0.00136 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 338 1 AMP AMP . D 2 AMP B 1 338 1 AMP AMP . E 3 HOH A 1 339 1 HOH HOH . E 3 HOH A 2 340 4 HOH HOH . E 3 HOH A 3 341 7 HOH HOH . E 3 HOH A 4 342 8 HOH HOH . E 3 HOH A 5 343 9 HOH HOH . E 3 HOH A 6 344 14 HOH HOH . E 3 HOH A 7 345 15 HOH HOH . E 3 HOH A 8 346 16 HOH HOH . E 3 HOH A 9 347 19 HOH HOH . E 3 HOH A 10 348 22 HOH HOH . E 3 HOH A 11 349 23 HOH HOH . E 3 HOH A 12 350 24 HOH HOH . E 3 HOH A 13 351 25 HOH HOH . E 3 HOH A 14 352 27 HOH HOH . E 3 HOH A 15 353 31 HOH HOH . E 3 HOH A 16 354 34 HOH HOH . E 3 HOH A 17 355 35 HOH HOH . E 3 HOH A 18 356 36 HOH HOH . E 3 HOH A 19 357 39 HOH HOH . E 3 HOH A 20 358 40 HOH HOH . E 3 HOH A 21 359 43 HOH HOH . E 3 HOH A 22 360 44 HOH HOH . E 3 HOH A 23 361 46 HOH HOH . E 3 HOH A 24 362 47 HOH HOH . E 3 HOH A 25 363 48 HOH HOH . E 3 HOH A 26 364 50 HOH HOH . E 3 HOH A 27 365 51 HOH HOH . E 3 HOH A 28 366 54 HOH HOH . E 3 HOH A 29 367 57 HOH HOH . E 3 HOH A 30 368 58 HOH HOH . E 3 HOH A 31 369 61 HOH HOH . E 3 HOH A 32 370 63 HOH HOH . E 3 HOH A 33 371 66 HOH HOH . E 3 HOH A 34 372 68 HOH HOH . E 3 HOH A 35 373 70 HOH HOH . E 3 HOH A 36 374 71 HOH HOH . E 3 HOH A 37 375 72 HOH HOH . E 3 HOH A 38 376 76 HOH HOH . E 3 HOH A 39 377 77 HOH HOH . E 3 HOH A 40 378 81 HOH HOH . E 3 HOH A 41 379 82 HOH HOH . E 3 HOH A 42 380 83 HOH HOH . E 3 HOH A 43 381 90 HOH HOH . E 3 HOH A 44 382 92 HOH HOH . E 3 HOH A 45 383 93 HOH HOH . E 3 HOH A 46 384 94 HOH HOH . E 3 HOH A 47 385 96 HOH HOH . E 3 HOH A 48 386 99 HOH HOH . E 3 HOH A 49 387 100 HOH HOH . E 3 HOH A 50 388 101 HOH HOH . E 3 HOH A 51 389 102 HOH HOH . E 3 HOH A 52 390 104 HOH HOH . E 3 HOH A 53 391 108 HOH HOH . E 3 HOH A 54 392 109 HOH HOH . E 3 HOH A 55 393 110 HOH HOH . E 3 HOH A 56 394 111 HOH HOH . E 3 HOH A 57 395 112 HOH HOH . E 3 HOH A 58 396 113 HOH HOH . E 3 HOH A 59 397 114 HOH HOH . E 3 HOH A 60 398 115 HOH HOH . E 3 HOH A 61 399 117 HOH HOH . E 3 HOH A 62 400 123 HOH HOH . E 3 HOH A 63 401 125 HOH HOH . E 3 HOH A 64 402 126 HOH HOH . E 3 HOH A 65 403 127 HOH HOH . E 3 HOH A 66 404 131 HOH HOH . E 3 HOH A 67 405 134 HOH HOH . E 3 HOH A 68 406 137 HOH HOH . E 3 HOH A 69 407 138 HOH HOH . E 3 HOH A 70 408 139 HOH HOH . E 3 HOH A 71 409 144 HOH HOH . E 3 HOH A 72 410 147 HOH HOH . E 3 HOH A 73 411 155 HOH HOH . E 3 HOH A 74 412 156 HOH HOH . E 3 HOH A 75 413 158 HOH HOH . E 3 HOH A 76 414 159 HOH HOH . E 3 HOH A 77 415 160 HOH HOH . E 3 HOH A 78 416 162 HOH HOH . E 3 HOH A 79 417 163 HOH HOH . E 3 HOH A 80 418 165 HOH HOH . E 3 HOH A 81 419 167 HOH HOH . E 3 HOH A 82 420 168 HOH HOH . E 3 HOH A 83 421 169 HOH HOH . E 3 HOH A 84 422 170 HOH HOH . E 3 HOH A 85 423 171 HOH HOH . E 3 HOH A 86 424 172 HOH HOH . E 3 HOH A 87 425 173 HOH HOH . E 3 HOH A 88 426 175 HOH HOH . E 3 HOH A 89 427 178 HOH HOH . E 3 HOH A 90 428 182 HOH HOH . E 3 HOH A 91 429 183 HOH HOH . E 3 HOH A 92 430 184 HOH HOH . E 3 HOH A 93 431 185 HOH HOH . E 3 HOH A 94 432 186 HOH HOH . E 3 HOH A 95 433 188 HOH HOH . E 3 HOH A 96 434 189 HOH HOH . E 3 HOH A 97 435 190 HOH HOH . E 3 HOH A 98 436 191 HOH HOH . E 3 HOH A 99 437 193 HOH HOH . E 3 HOH A 100 438 194 HOH HOH . E 3 HOH A 101 439 195 HOH HOH . E 3 HOH A 102 440 196 HOH HOH . E 3 HOH A 103 441 198 HOH HOH . E 3 HOH A 104 442 199 HOH HOH . E 3 HOH A 105 443 204 HOH HOH . E 3 HOH A 106 444 205 HOH HOH . E 3 HOH A 107 445 206 HOH HOH . E 3 HOH A 108 446 207 HOH HOH . E 3 HOH A 109 447 209 HOH HOH . E 3 HOH A 110 448 214 HOH HOH . E 3 HOH A 111 449 216 HOH HOH . E 3 HOH A 112 450 217 HOH HOH . E 3 HOH A 113 451 219 HOH HOH . E 3 HOH A 114 452 221 HOH HOH . E 3 HOH A 115 453 222 HOH HOH . E 3 HOH A 116 454 227 HOH HOH . E 3 HOH A 117 455 230 HOH HOH . E 3 HOH A 118 456 231 HOH HOH . E 3 HOH A 119 457 234 HOH HOH . E 3 HOH A 120 458 236 HOH HOH . E 3 HOH A 121 459 237 HOH HOH . E 3 HOH A 122 460 238 HOH HOH . E 3 HOH A 123 461 239 HOH HOH . E 3 HOH A 124 462 240 HOH HOH . E 3 HOH A 125 463 241 HOH HOH . E 3 HOH A 126 464 245 HOH HOH . E 3 HOH A 127 465 248 HOH HOH . E 3 HOH A 128 466 257 HOH HOH . E 3 HOH A 129 467 201 HOH HOH . F 3 HOH B 1 400 118 HOH HOH . F 3 HOH B 2 401 2 HOH HOH . F 3 HOH B 3 402 3 HOH HOH . F 3 HOH B 4 403 5 HOH HOH . F 3 HOH B 5 404 6 HOH HOH . F 3 HOH B 6 405 10 HOH HOH . F 3 HOH B 7 406 11 HOH HOH . F 3 HOH B 8 407 12 HOH HOH . F 3 HOH B 9 408 13 HOH HOH . F 3 HOH B 10 409 17 HOH HOH . F 3 HOH B 11 410 18 HOH HOH . F 3 HOH B 12 411 20 HOH HOH . F 3 HOH B 13 412 21 HOH HOH . F 3 HOH B 14 413 26 HOH HOH . F 3 HOH B 15 414 28 HOH HOH . F 3 HOH B 16 415 29 HOH HOH . F 3 HOH B 17 416 30 HOH HOH . F 3 HOH B 18 417 32 HOH HOH . F 3 HOH B 19 418 33 HOH HOH . F 3 HOH B 20 419 37 HOH HOH . F 3 HOH B 21 420 38 HOH HOH . F 3 HOH B 22 421 41 HOH HOH . F 3 HOH B 23 422 42 HOH HOH . F 3 HOH B 24 423 45 HOH HOH . F 3 HOH B 25 424 49 HOH HOH . F 3 HOH B 26 425 52 HOH HOH . F 3 HOH B 27 426 53 HOH HOH . F 3 HOH B 28 427 55 HOH HOH . F 3 HOH B 29 428 56 HOH HOH . F 3 HOH B 30 429 59 HOH HOH . F 3 HOH B 31 430 60 HOH HOH . F 3 HOH B 32 431 62 HOH HOH . F 3 HOH B 33 432 64 HOH HOH . F 3 HOH B 34 433 65 HOH HOH . F 3 HOH B 35 434 67 HOH HOH . F 3 HOH B 36 435 69 HOH HOH . F 3 HOH B 37 436 73 HOH HOH . F 3 HOH B 38 437 74 HOH HOH . F 3 HOH B 39 438 75 HOH HOH . F 3 HOH B 40 439 78 HOH HOH . F 3 HOH B 41 440 79 HOH HOH . F 3 HOH B 42 441 80 HOH HOH . F 3 HOH B 43 442 84 HOH HOH . F 3 HOH B 44 443 85 HOH HOH . F 3 HOH B 45 444 86 HOH HOH . F 3 HOH B 46 445 87 HOH HOH . F 3 HOH B 47 446 88 HOH HOH . F 3 HOH B 48 447 89 HOH HOH . F 3 HOH B 49 448 91 HOH HOH . F 3 HOH B 50 449 95 HOH HOH . F 3 HOH B 51 450 97 HOH HOH . F 3 HOH B 52 451 98 HOH HOH . F 3 HOH B 53 452 103 HOH HOH . F 3 HOH B 54 453 105 HOH HOH . F 3 HOH B 55 454 106 HOH HOH . F 3 HOH B 56 455 107 HOH HOH . F 3 HOH B 57 456 116 HOH HOH . F 3 HOH B 58 457 119 HOH HOH . F 3 HOH B 59 458 120 HOH HOH . F 3 HOH B 60 459 121 HOH HOH . F 3 HOH B 61 460 122 HOH HOH . F 3 HOH B 62 461 124 HOH HOH . F 3 HOH B 63 462 128 HOH HOH . F 3 HOH B 64 463 129 HOH HOH . F 3 HOH B 65 464 130 HOH HOH . F 3 HOH B 66 465 132 HOH HOH . F 3 HOH B 67 466 133 HOH HOH . F 3 HOH B 68 467 135 HOH HOH . F 3 HOH B 69 468 136 HOH HOH . F 3 HOH B 70 469 140 HOH HOH . F 3 HOH B 71 470 141 HOH HOH . F 3 HOH B 72 471 142 HOH HOH . F 3 HOH B 73 472 143 HOH HOH . F 3 HOH B 74 473 145 HOH HOH . F 3 HOH B 75 474 146 HOH HOH . F 3 HOH B 76 475 148 HOH HOH . F 3 HOH B 77 476 149 HOH HOH . F 3 HOH B 78 477 150 HOH HOH . F 3 HOH B 79 478 151 HOH HOH . F 3 HOH B 80 479 152 HOH HOH . F 3 HOH B 81 480 153 HOH HOH . F 3 HOH B 82 481 154 HOH HOH . F 3 HOH B 83 482 157 HOH HOH . F 3 HOH B 84 483 161 HOH HOH . F 3 HOH B 85 484 164 HOH HOH . F 3 HOH B 86 485 166 HOH HOH . F 3 HOH B 87 486 174 HOH HOH . F 3 HOH B 88 487 176 HOH HOH . F 3 HOH B 89 488 177 HOH HOH . F 3 HOH B 90 489 179 HOH HOH . F 3 HOH B 91 490 180 HOH HOH . F 3 HOH B 92 491 181 HOH HOH . F 3 HOH B 93 492 187 HOH HOH . F 3 HOH B 94 493 192 HOH HOH . F 3 HOH B 95 494 197 HOH HOH . F 3 HOH B 96 495 200 HOH HOH . F 3 HOH B 97 496 202 HOH HOH . F 3 HOH B 98 497 203 HOH HOH . F 3 HOH B 99 498 208 HOH HOH . F 3 HOH B 100 499 210 HOH HOH . F 3 HOH B 101 500 211 HOH HOH . F 3 HOH B 102 501 212 HOH HOH . F 3 HOH B 103 502 213 HOH HOH . F 3 HOH B 104 503 215 HOH HOH . F 3 HOH B 105 504 218 HOH HOH . F 3 HOH B 106 505 220 HOH HOH . F 3 HOH B 107 506 223 HOH HOH . F 3 HOH B 108 507 224 HOH HOH . F 3 HOH B 109 508 225 HOH HOH . F 3 HOH B 110 509 226 HOH HOH . F 3 HOH B 111 510 228 HOH HOH . F 3 HOH B 112 511 229 HOH HOH . F 3 HOH B 113 512 232 HOH HOH . F 3 HOH B 114 513 233 HOH HOH . F 3 HOH B 115 514 235 HOH HOH . F 3 HOH B 116 515 242 HOH HOH . F 3 HOH B 117 516 243 HOH HOH . F 3 HOH B 118 517 244 HOH HOH . F 3 HOH B 119 518 246 HOH HOH . F 3 HOH B 120 519 247 HOH HOH . F 3 HOH B 121 520 249 HOH HOH . F 3 HOH B 122 521 250 HOH HOH . F 3 HOH B 123 522 251 HOH HOH . F 3 HOH B 124 523 252 HOH HOH . F 3 HOH B 125 524 253 HOH HOH . F 3 HOH B 126 525 254 HOH HOH . F 3 HOH B 127 526 255 HOH HOH . F 3 HOH B 128 527 256 HOH HOH . F 3 HOH B 129 528 258 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 4.855 10.556 -4.643 1 87.27 ? P AMP 338 A 1 HETATM 2 O O1P AMP . . . C 2 5.113 9.146 -5.14 1 85.36 ? O1P AMP 338 A 1 HETATM 3 O O2P AMP . . . C 2 6.072 11.456 -4.693 1 84.28 ? O2P AMP 338 A 1 HETATM 4 O O3P AMP . . . C 2 4.088 10.611 -3.335 1 86.58 ? O3P AMP 338 A 1 HETATM 5 O O5' AMP . . . C 2 3.832 11.201 -5.721 1 80.9 ? O5' AMP 338 A 1 HETATM 6 C C5' AMP . . . C 2 2.427 10.975 -5.589 1 74.2 ? C5' AMP 338 A 1 HETATM 7 C C4' AMP . . . C 2 1.659 11.057 -6.908 1 68.28 ? C4' AMP 338 A 1 HETATM 8 O O4' AMP . . . C 2 2.436 10.608 -8.022 1 65.93 ? O4' AMP 338 A 1 HETATM 9 C C3' AMP . . . C 2 0.425 10.171 -6.852 1 66.54 ? C3' AMP 338 A 1 HETATM 10 O O3' AMP . . . C 2 -0.725 10.929 -7.243 1 68.69 ? O3' AMP 338 A 1 HETATM 11 C C2' AMP . . . C 2 0.677 9.032 -7.827 1 63.29 ? C2' AMP 338 A 1 HETATM 12 O O2' AMP . . . C 2 -0.512 8.701 -8.553 1 62.25 ? O2' AMP 338 A 1 HETATM 13 C C1' AMP . . . C 2 1.775 9.556 -8.739 1 56.86 ? C1' AMP 338 A 1 HETATM 14 N N9 AMP . . . C 2 2.769 8.512 -9.106 1 54.8 ? N9 AMP 338 A 1 HETATM 15 C C8 AMP . . . C 2 3.826 8.144 -8.355 1 53.02 ? C8 AMP 338 A 1 HETATM 16 N N7 AMP . . . C 2 4.554 7.181 -8.977 1 55.39 ? N7 AMP 338 A 1 HETATM 17 C C5 AMP . . . C 2 3.962 6.92 -10.158 1 52.05 ? C5 AMP 338 A 1 HETATM 18 C C6 AMP . . . C 2 4.216 6.003 -11.299 1 52.75 ? C6 AMP 338 A 1 HETATM 19 N N6 AMP . . . C 2 5.283 5.161 -11.292 1 50.06 ? N6 AMP 338 A 1 HETATM 20 N N1 AMP . . . C 2 3.354 6.054 -12.348 1 51.72 ? N1 AMP 338 A 1 HETATM 21 C C2 AMP . . . C 2 2.297 6.89 -12.358 1 52.15 ? C2 AMP 338 A 1 HETATM 22 N N3 AMP . . . C 2 2.005 7.74 -11.352 1 50.78 ? N3 AMP 338 A 1 HETATM 23 C C4 AMP . . . C 2 2.787 7.805 -10.243 1 52.46 ? C4 AMP 338 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #