data_3C0O
#
_model_server_result.job_id            U1ljQvJA8US8zD4Dp9qI3Q 
_model_server_result.datetime_utc      '2024-12-21 16:55:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c0o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3C0O 
#
_exptl.entry_id    3C0O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3C0O 
_cell.length_a            70.954 
_cell.length_b            90.78 
_cell.length_c            165.805 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C0O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
disulf ? disulf2 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 19 B CYS 19 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
disulf ? disulf4 B SG CYS 159 B CYS 159 1_555 B SG CYS 164 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                M6P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     ALPHA-D-MANNOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-mannose;6-O-phosphono-D-mannose;6-O-phosphono-mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 M6P sing 224 n n 
C1 O1 M6P sing 225 n n 
C1 O5 M6P sing 226 n n 
C1 H1 M6P sing 227 n n 
C2 C3 M6P sing 228 n n 
C2 O2 M6P sing 229 n n 
C2 H2 M6P sing 230 n n 
C3 C4 M6P sing 231 n n 
C3 O3 M6P sing 232 n n 
C3 H3 M6P sing 233 n n 
C4 C5 M6P sing 234 n n 
C4 O4 M6P sing 235 n n 
C4 H4 M6P sing 236 n n 
C5 C6 M6P sing 237 n n 
C5 O5 M6P sing 238 n n 
C5 H5 M6P sing 239 n n 
C6 O6 M6P sing 240 n n 
C6 H61 M6P sing 241 n n 
C6 H62 M6P sing 242 n n 
O1 HO1 M6P sing 243 n n 
O2 HO2 M6P sing 244 n n 
O3 HO3 M6P sing 245 n n 
O4 HO4 M6P sing 246 n n 
O6 P M6P sing 247 n n 
P O1P M6P doub 248 n n 
P O2P M6P sing 249 n n 
P O3P M6P sing 250 n n 
O2P HOP2 M6P sing 251 n n 
O3P HOP3 M6P sing 252 n n 
#
_pdbx_chem_comp_identifier.comp_id            M6P 
_pdbx_chem_comp_identifier.identifier         a-D-Manp6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3C0O 
_atom_sites.fract_transf_matrix[1][1]    0.014094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 600 600 ACT ACT . 
D 3 M6P A 1 501 501 M6P M6P . 
E 3 M6P B 1 502 502 M6P M6P . 
F 4 HOH A 1 601 3 HOH HOH . 
F 4 HOH A 2 602 8 HOH HOH . 
F 4 HOH A 3 603 13 HOH HOH . 
F 4 HOH A 4 604 14 HOH HOH . 
F 4 HOH A 5 605 15 HOH HOH . 
F 4 HOH A 6 606 16 HOH HOH . 
F 4 HOH A 7 607 18 HOH HOH . 
F 4 HOH A 8 608 19 HOH HOH . 
F 4 HOH A 9 609 26 HOH HOH . 
F 4 HOH A 10 610 32 HOH HOH . 
F 4 HOH A 11 611 34 HOH HOH . 
F 4 HOH A 12 612 40 HOH HOH . 
F 4 HOH A 13 613 41 HOH HOH . 
F 4 HOH A 14 614 42 HOH HOH . 
F 4 HOH A 15 615 43 HOH HOH . 
F 4 HOH A 16 616 45 HOH HOH . 
F 4 HOH A 17 617 46 HOH HOH . 
F 4 HOH A 18 618 47 HOH HOH . 
F 4 HOH A 19 619 50 HOH HOH . 
F 4 HOH A 20 620 53 HOH HOH . 
F 4 HOH A 21 621 56 HOH HOH . 
F 4 HOH A 22 622 58 HOH HOH . 
F 4 HOH A 23 623 59 HOH HOH . 
F 4 HOH A 24 624 61 HOH HOH . 
F 4 HOH A 25 625 64 HOH HOH . 
F 4 HOH A 26 626 67 HOH HOH . 
F 4 HOH A 27 627 68 HOH HOH . 
F 4 HOH A 28 628 69 HOH HOH . 
F 4 HOH A 29 629 73 HOH HOH . 
F 4 HOH A 30 630 74 HOH HOH . 
F 4 HOH A 31 631 75 HOH HOH . 
F 4 HOH A 32 632 80 HOH HOH . 
F 4 HOH A 33 633 81 HOH HOH . 
F 4 HOH A 34 634 82 HOH HOH . 
F 4 HOH A 35 635 83 HOH HOH . 
F 4 HOH A 36 636 85 HOH HOH . 
F 4 HOH A 37 637 87 HOH HOH . 
F 4 HOH A 38 638 91 HOH HOH . 
F 4 HOH A 39 639 92 HOH HOH . 
F 4 HOH A 40 640 93 HOH HOH . 
F 4 HOH A 41 641 94 HOH HOH . 
F 4 HOH A 42 642 95 HOH HOH . 
F 4 HOH A 43 643 96 HOH HOH . 
F 4 HOH A 44 644 99 HOH HOH . 
F 4 HOH A 45 645 101 HOH HOH . 
F 4 HOH A 46 646 102 HOH HOH . 
F 4 HOH A 47 647 103 HOH HOH . 
F 4 HOH A 48 648 104 HOH HOH . 
F 4 HOH A 49 649 105 HOH HOH . 
F 4 HOH A 50 650 106 HOH HOH . 
F 4 HOH A 51 651 107 HOH HOH . 
F 4 HOH A 52 652 108 HOH HOH . 
F 4 HOH A 53 653 109 HOH HOH . 
F 4 HOH A 54 654 111 HOH HOH . 
F 4 HOH A 55 655 112 HOH HOH . 
F 4 HOH A 56 656 113 HOH HOH . 
F 4 HOH A 57 657 114 HOH HOH . 
F 4 HOH A 58 658 115 HOH HOH . 
F 4 HOH A 59 659 116 HOH HOH . 
F 4 HOH A 60 660 117 HOH HOH . 
F 4 HOH A 61 661 118 HOH HOH . 
F 4 HOH A 62 662 119 HOH HOH . 
F 4 HOH A 63 663 121 HOH HOH . 
F 4 HOH A 64 664 122 HOH HOH . 
F 4 HOH A 65 665 123 HOH HOH . 
F 4 HOH A 66 666 124 HOH HOH . 
F 4 HOH A 67 667 125 HOH HOH . 
F 4 HOH A 68 668 126 HOH HOH . 
F 4 HOH A 69 669 128 HOH HOH . 
F 4 HOH A 70 670 129 HOH HOH . 
F 4 HOH A 71 671 137 HOH HOH . 
F 4 HOH A 72 672 167 HOH HOH . 
F 4 HOH A 73 673 168 HOH HOH . 
F 4 HOH A 74 674 169 HOH HOH . 
F 4 HOH A 75 675 172 HOH HOH . 
F 4 HOH A 76 676 173 HOH HOH . 
G 4 HOH B 1 503 1 HOH HOH . 
G 4 HOH B 2 504 2 HOH HOH . 
G 4 HOH B 3 505 4 HOH HOH . 
G 4 HOH B 4 506 5 HOH HOH . 
G 4 HOH B 5 507 6 HOH HOH . 
G 4 HOH B 6 508 7 HOH HOH . 
G 4 HOH B 7 509 9 HOH HOH . 
G 4 HOH B 8 510 10 HOH HOH . 
G 4 HOH B 9 511 11 HOH HOH . 
G 4 HOH B 10 512 12 HOH HOH . 
G 4 HOH B 11 513 17 HOH HOH . 
G 4 HOH B 12 514 20 HOH HOH . 
G 4 HOH B 13 515 21 HOH HOH . 
G 4 HOH B 14 516 22 HOH HOH . 
G 4 HOH B 15 517 23 HOH HOH . 
G 4 HOH B 16 518 24 HOH HOH . 
G 4 HOH B 17 519 25 HOH HOH . 
G 4 HOH B 18 520 27 HOH HOH . 
G 4 HOH B 19 521 28 HOH HOH . 
G 4 HOH B 20 522 29 HOH HOH . 
G 4 HOH B 21 523 30 HOH HOH . 
G 4 HOH B 22 524 31 HOH HOH . 
G 4 HOH B 23 525 33 HOH HOH . 
G 4 HOH B 24 526 35 HOH HOH . 
G 4 HOH B 25 527 36 HOH HOH . 
G 4 HOH B 26 528 37 HOH HOH . 
G 4 HOH B 27 529 38 HOH HOH . 
G 4 HOH B 28 530 39 HOH HOH . 
G 4 HOH B 29 531 44 HOH HOH . 
G 4 HOH B 30 532 48 HOH HOH . 
G 4 HOH B 31 533 49 HOH HOH . 
G 4 HOH B 32 534 51 HOH HOH . 
G 4 HOH B 33 535 52 HOH HOH . 
G 4 HOH B 34 536 54 HOH HOH . 
G 4 HOH B 35 537 55 HOH HOH . 
G 4 HOH B 36 538 57 HOH HOH . 
G 4 HOH B 37 539 60 HOH HOH . 
G 4 HOH B 38 540 62 HOH HOH . 
G 4 HOH B 39 541 63 HOH HOH . 
G 4 HOH B 40 542 65 HOH HOH . 
G 4 HOH B 41 543 66 HOH HOH . 
G 4 HOH B 42 544 70 HOH HOH . 
G 4 HOH B 43 545 71 HOH HOH . 
G 4 HOH B 44 546 72 HOH HOH . 
G 4 HOH B 45 547 76 HOH HOH . 
G 4 HOH B 46 548 77 HOH HOH . 
G 4 HOH B 47 549 78 HOH HOH . 
G 4 HOH B 48 550 79 HOH HOH . 
G 4 HOH B 49 551 84 HOH HOH . 
G 4 HOH B 50 552 86 HOH HOH . 
G 4 HOH B 51 553 88 HOH HOH . 
G 4 HOH B 52 554 89 HOH HOH . 
G 4 HOH B 53 555 90 HOH HOH . 
G 4 HOH B 54 556 97 HOH HOH . 
G 4 HOH B 55 557 98 HOH HOH . 
G 4 HOH B 56 558 100 HOH HOH . 
G 4 HOH B 57 559 110 HOH HOH . 
G 4 HOH B 58 560 120 HOH HOH . 
G 4 HOH B 59 561 127 HOH HOH . 
G 4 HOH B 60 562 130 HOH HOH . 
G 4 HOH B 61 563 131 HOH HOH . 
G 4 HOH B 62 564 132 HOH HOH . 
G 4 HOH B 63 565 133 HOH HOH . 
G 4 HOH B 64 566 134 HOH HOH . 
G 4 HOH B 65 567 135 HOH HOH . 
G 4 HOH B 66 568 136 HOH HOH . 
G 4 HOH B 67 569 138 HOH HOH . 
G 4 HOH B 68 570 139 HOH HOH . 
G 4 HOH B 69 571 140 HOH HOH . 
G 4 HOH B 70 572 141 HOH HOH . 
G 4 HOH B 71 573 142 HOH HOH . 
G 4 HOH B 72 574 143 HOH HOH . 
G 4 HOH B 73 575 144 HOH HOH . 
G 4 HOH B 74 576 145 HOH HOH . 
G 4 HOH B 75 577 146 HOH HOH . 
G 4 HOH B 76 578 147 HOH HOH . 
G 4 HOH B 77 579 148 HOH HOH . 
G 4 HOH B 78 580 149 HOH HOH . 
G 4 HOH B 79 581 150 HOH HOH . 
G 4 HOH B 80 582 151 HOH HOH . 
G 4 HOH B 81 583 152 HOH HOH . 
G 4 HOH B 82 584 153 HOH HOH . 
G 4 HOH B 83 585 154 HOH HOH . 
G 4 HOH B 84 586 155 HOH HOH . 
G 4 HOH B 85 587 156 HOH HOH . 
G 4 HOH B 86 588 157 HOH HOH . 
G 4 HOH B 87 589 158 HOH HOH . 
G 4 HOH B 88 590 159 HOH HOH . 
G 4 HOH B 89 591 160 HOH HOH . 
G 4 HOH B 90 592 161 HOH HOH . 
G 4 HOH B 91 593 162 HOH HOH . 
G 4 HOH B 92 594 163 HOH HOH . 
G 4 HOH B 93 595 164 HOH HOH . 
G 4 HOH B 94 596 165 HOH HOH . 
G 4 HOH B 95 597 166 HOH HOH . 
G 4 HOH B 96 598 170 HOH HOH . 
G 4 HOH B 97 599 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 M6P . . . D 3 36.806 32.442 15.785 1 49.27 ? C1 M6P 501 A 1 
HETATM 2 C C2 M6P . . . D 3 38.256 32.527 16.223 1 49.7 ? C2 M6P 501 A 1 
HETATM 3 C C3 M6P . . . D 3 38.871 33.93 16.159 1 50.39 ? C3 M6P 501 A 1 
HETATM 4 C C4 M6P . . . D 3 38.449 34.594 14.88 1 49.06 ? C4 M6P 501 A 1 
HETATM 5 C C5 M6P . . . D 3 36.963 34.77 14.939 1 48.67 ? C5 M6P 501 A 1 
HETATM 6 C C6 M6P . . . D 3 36.463 35.531 13.726 1 45.58 ? C6 M6P 501 A 1 
HETATM 7 O O1 M6P . . . D 3 35.9 32.396 16.873 1 50.15 ? O1 M6P 501 A 1 
HETATM 8 O O2 M6P . . . D 3 38.984 31.676 15.343 1 50.2 ? O2 M6P 501 A 1 
HETATM 9 O O3 M6P . . . D 3 40.312 33.892 16.232 1 49.14 ? O3 M6P 501 A 1 
HETATM 10 O O4 M6P . . . D 3 38.959 35.886 15.003 1 50.74 ? O4 M6P 501 A 1 
HETATM 11 O O5 M6P . . . D 3 36.378 33.482 14.906 1 49.13 ? O5 M6P 501 A 1 
HETATM 12 O O6 M6P . . . D 3 36.572 34.658 12.607 1 41.75 ? O6 M6P 501 A 1 
HETATM 13 P P M6P . . . D 3 36.643 35.149 11.058 1 41.98 ? P M6P 501 A 1 
HETATM 14 O O1P M6P . . . D 3 37.494 36.458 11.115 1 42.5 ? O1P M6P 501 A 1 
HETATM 15 O O2P M6P . . . D 3 35.24 35.322 10.552 1 37.87 ? O2P M6P 501 A 1 
HETATM 16 O O3P M6P . . . D 3 37.505 34.068 10.428 1 39.47 ? O3P M6P 501 A 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#