data_3C14 # _model_server_result.job_id X7c9OZ-6xizqGMF3ZAadsQ _model_server_result.datetime_utc '2024-10-26 22:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":405}' # _entry.id 3C14 # _exptl.entry_id 3C14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C14 _cell.length_a 117.874 _cell.length_b 132.997 _cell.length_c 69.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2 POP . A POP 1 1_555 F CA CA . A CA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc2 E O6 POP . A POP 1 1_555 F CA CA . A CA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 E O1 POP . A POP 1 1_555 F CA CA . A CA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc4 F CA CA . A CA 29 1_555 A OD2 ASP 41 A ASP 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc5 F CA CA . A CA 29 1_555 A O ILE 42 A ILE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc6 F CA CA . A CA 29 1_555 A OD2 ASP 85 A ASP 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc7 C OG SER 54 C SER 54 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc8 C OG1 THR 204 C THR 204 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc9 G MG MG . C MG 403 1_555 I O2G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc10 G MG MG . C MG 403 1_555 I O2B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 G MG MG . C MG 403 1_555 I O3G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 194 n n PG S1G GSP doub 195 n n PG O2G GSP sing 196 n n PG O3G GSP sing 197 n n O3B PB GSP sing 198 n n O2G HOG2 GSP sing 199 n n O3G HOG3 GSP sing 200 n n PB O1B GSP doub 201 n n PB O2B GSP sing 202 n n PB O3A GSP sing 203 n n O2B HOB2 GSP sing 204 n n PA O1A GSP doub 205 n n PA O2A GSP sing 206 n n PA O3A GSP sing 207 n n PA O5' GSP sing 208 n n O2A HOA2 GSP sing 209 n n O5' C5' GSP sing 210 n n C5' C4' GSP sing 211 n n C5' "H5'1" GSP sing 212 n n C5' "H5'2" GSP sing 213 n n C4' O4' GSP sing 214 n n C4' C3' GSP sing 215 n n C4' H4' GSP sing 216 n n O4' C1' GSP sing 217 n n C3' O3' GSP sing 218 n n C3' C2' GSP sing 219 n n C3' H3' GSP sing 220 n n O3' HO3' GSP sing 221 n n C2' O2' GSP sing 222 n n C2' C1' GSP sing 223 n n C2' H2' GSP sing 224 n n O2' HO2' GSP sing 225 n n C1' N9 GSP sing 226 n n C1' H1' GSP sing 227 n n N9 C8 GSP sing 228 n y N9 C4 GSP sing 229 n y C8 N7 GSP doub 230 n y C8 H8 GSP sing 231 n n N7 C5 GSP sing 232 n y C5 C6 GSP sing 233 n n C5 C4 GSP doub 234 n y C6 O6 GSP doub 235 n n C6 N1 GSP sing 236 n n N1 C2 GSP sing 237 n n N1 HN1 GSP sing 238 n n C2 N2 GSP sing 239 n n C2 N3 GSP doub 240 n n N2 HN21 GSP sing 241 n n N2 HN22 GSP sing 242 n n N3 C4 GSP sing 243 n n # _atom_sites.entry_id 3C14 _atom_sites.fract_transf_matrix[1][1] 0.008484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FOK A 1 101 101 FOK FOK . E 5 POP A 1 1 1 POP POP . F 6 CA A 1 29 29 CA CA . G 7 MG C 1 403 403 MG MG . H 8 CL C 1 404 404 CL CL . I 9 GSP C 1 405 405 GSP GSP . J 10 HOH A 1 8 8 HOH HOH . J 10 HOH A 2 18 18 HOH HOH . J 10 HOH A 3 20 20 HOH HOH . J 10 HOH A 4 22 22 HOH HOH . J 10 HOH A 5 30 30 HOH HOH . K 10 HOH B 1 10 10 HOH HOH . K 10 HOH B 2 19 19 HOH HOH . K 10 HOH B 3 21 21 HOH HOH . K 10 HOH B 4 24 24 HOH HOH . K 10 HOH B 5 25 25 HOH HOH . K 10 HOH B 6 40 40 HOH HOH . K 10 HOH B 7 41 41 HOH HOH . K 10 HOH B 8 46 46 HOH HOH . K 10 HOH B 9 49 49 HOH HOH . K 10 HOH B 10 50 50 HOH HOH . K 10 HOH B 11 51 51 HOH HOH . K 10 HOH B 12 59 59 HOH HOH . L 10 HOH C 1 406 406 HOH HOH . L 10 HOH C 2 407 407 HOH HOH . L 10 HOH C 3 408 408 HOH HOH . L 10 HOH C 4 409 409 HOH HOH . L 10 HOH C 5 410 410 HOH HOH . L 10 HOH C 6 411 411 HOH HOH . L 10 HOH C 7 412 412 HOH HOH . L 10 HOH C 8 413 413 HOH HOH . L 10 HOH C 9 414 414 HOH HOH . L 10 HOH C 10 415 415 HOH HOH . L 10 HOH C 11 416 416 HOH HOH . L 10 HOH C 12 417 417 HOH HOH . L 10 HOH C 13 418 418 HOH HOH . L 10 HOH C 14 419 419 HOH HOH . L 10 HOH C 15 420 420 HOH HOH . L 10 HOH C 16 421 421 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . I 9 -35.766 -3.084 6.48 1 71.17 ? PG GSP 405 C 1 HETATM 2 O O3B GSP . . . I 9 -36.448 -2.783 7.901 1 60.39 ? O3B GSP 405 C 1 HETATM 3 S S1G GSP . . . I 9 -34.355 -3.978 6.794 1 75.6 ? S1G GSP 405 C 1 HETATM 4 O O2G GSP . . . I 9 -36.736 -3.86 5.564 1 76.29 ? O2G GSP 405 C 1 HETATM 5 O O3G GSP . . . I 9 -35.412 -1.762 5.78 1 67.33 ? O3G GSP 405 C 1 HETATM 6 P PB GSP . . . I 9 -38.037 -2.651 7.99 1 48.37 ? PB GSP 405 C 1 HETATM 7 O O1B GSP . . . I 9 -38.349 -2.083 9.309 1 54.98 ? O1B GSP 405 C 1 HETATM 8 O O2B GSP . . . I 9 -38.549 -1.815 6.888 1 42.63 ? O2B GSP 405 C 1 HETATM 9 P PA GSP . . . I 9 -40.123 -4.607 8.103 1 40.04 ? PA GSP 405 C 1 HETATM 10 O O1A GSP . . . I 9 -41.046 -3.554 7.642 1 43.45 ? O1A GSP 405 C 1 HETATM 11 O O2A GSP . . . I 9 -40.354 -5.869 7.382 1 36.4 ? O2A GSP 405 C 1 HETATM 12 O O3A GSP . . . I 9 -38.588 -4.16 7.875 1 45.88 ? O3A GSP 405 C 1 HETATM 13 O O5' GSP . . . I 9 -40.314 -4.834 9.702 1 32.69 ? O5' GSP 405 C 1 HETATM 14 C C5' GSP . . . I 9 -39.804 -5.985 10.348 1 30.5 ? C5' GSP 405 C 1 HETATM 15 C C4' GSP . . . I 9 -40.867 -7.028 10.707 1 34.07 ? C4' GSP 405 C 1 HETATM 16 O O4' GSP . . . I 9 -41.505 -6.699 11.93 1 36.41 ? O4' GSP 405 C 1 HETATM 17 C C3' GSP . . . I 9 -41.966 -7.186 9.664 1 36.33 ? C3' GSP 405 C 1 HETATM 18 O O3' GSP . . . I 9 -42.035 -8.532 9.262 1 43.71 ? O3' GSP 405 C 1 HETATM 19 C C2' GSP . . . I 9 -43.252 -6.788 10.358 1 34.94 ? C2' GSP 405 C 1 HETATM 20 O O2' GSP . . . I 9 -44.288 -7.695 10.082 1 40 ? O2' GSP 405 C 1 HETATM 21 C C1' GSP . . . I 9 -42.917 -6.819 11.842 1 35.52 ? C1' GSP 405 C 1 HETATM 22 N N9 GSP . . . I 9 -43.577 -5.703 12.551 1 34.76 ? N9 GSP 405 C 1 HETATM 23 C C8 GSP . . . I 9 -43.518 -4.384 12.201 1 35.57 ? C8 GSP 405 C 1 HETATM 24 N N7 GSP . . . I 9 -44.244 -3.666 13.081 1 34.06 ? N7 GSP 405 C 1 HETATM 25 C C5 GSP . . . I 9 -44.766 -4.501 13.996 1 32.45 ? C5 GSP 405 C 1 HETATM 26 C C6 GSP . . . I 9 -45.572 -4.278 15.113 1 33.54 ? C6 GSP 405 C 1 HETATM 27 O O6 GSP . . . I 9 -45.935 -3.143 15.406 1 34.36 ? O6 GSP 405 C 1 HETATM 28 N N1 GSP . . . I 9 -45.969 -5.338 15.889 1 32.29 ? N1 GSP 405 C 1 HETATM 29 C C2 GSP . . . I 9 -45.552 -6.611 15.557 1 33.58 ? C2 GSP 405 C 1 HETATM 30 N N2 GSP . . . I 9 -45.936 -7.64 16.308 1 36.26 ? N2 GSP 405 C 1 HETATM 31 N N3 GSP . . . I 9 -44.748 -6.825 14.445 1 33 ? N3 GSP 405 C 1 HETATM 32 C C4 GSP . . . I 9 -44.357 -5.787 13.672 1 32.47 ? C4 GSP 405 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #