data_3C15 # _model_server_result.job_id 9JFa-Y80-BxzeXh9oEH7WQ _model_server_result.datetime_utc '2024-11-23 10:53:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3C15 # _exptl.entry_id 3C15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C15 _cell.length_a 117.51 _cell.length_b 133.08 _cell.length_c 70.108 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O3 POP . A POP 1 1_555 D MG MG . A MG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? metalc ? metalc2 D MG MG . A MG 29 1_555 A OD2 ASP 41 A ASP 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 D MG MG . A MG 29 1_555 A O ILE 42 A ILE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 D MG MG . A MG 29 1_555 A OD2 ASP 85 A ASP 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 375 n n P1 O2 POP sing 376 n n P1 O3 POP sing 377 n n P1 O POP sing 378 n n O2 HO2 POP sing 379 n n O P2 POP sing 380 n n P2 O4 POP doub 381 n n P2 O5 POP sing 382 n n P2 O6 POP sing 383 n n O5 HO5 POP sing 384 n n # _atom_sites.entry_id 3C15 _atom_sites.fract_transf_matrix[1][1] 0.00851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 29 29 MG MG . E 5 FOK A 1 101 101 FOK FOK . F 6 POP A 1 1 1 POP POP . G 7 CL C 1 403 397 CL CL . H 8 GSP C 1 404 395 GSP GSP . I 9 HOH A 1 8 8 HOH HOH . I 9 HOH A 2 20 20 HOH HOH . I 9 HOH A 3 30 30 HOH HOH . J 9 HOH B 1 19 19 HOH HOH . J 9 HOH B 2 24 24 HOH HOH . J 9 HOH B 3 46 46 HOH HOH . J 9 HOH B 4 50 50 HOH HOH . J 9 HOH B 5 51 51 HOH HOH . J 9 HOH B 6 59 59 HOH HOH . K 9 HOH C 1 405 13 HOH HOH . K 9 HOH C 2 406 23 HOH HOH . K 9 HOH C 3 407 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . F 6 -0.424 7.568 24.481 1 71.17 ? P1 POP 1 A 1 HETATM 2 O O1 POP . . . F 6 -0.365 7.824 25.971 1 72.59 ? O1 POP 1 A 1 HETATM 3 O O2 POP . . . F 6 -1.78 7.948 23.92 1 72.19 ? O2 POP 1 A 1 HETATM 4 O O3 POP . . . F 6 0.633 8.388 23.766 1 71.92 ? O3 POP 1 A 1 HETATM 5 O O POP . . . F 6 -0.139 5.994 24.279 1 70.89 ? O POP 1 A 1 HETATM 6 P P2 POP . . . F 6 1.365 5.468 24.048 1 69.62 ? P2 POP 1 A 1 HETATM 7 O O4 POP . . . F 6 1.35 3.956 24.116 1 71.04 ? O4 POP 1 A 1 HETATM 8 O O5 POP . . . F 6 1.858 5.916 22.687 1 71.76 ? O5 POP 1 A 1 HETATM 9 O O6 POP . . . F 6 2.262 6.036 25.126 1 71.61 ? O6 POP 1 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #