data_3C16 # _model_server_result.job_id 7OTa7GuHxfgc-sEXm8ZPnw _model_server_result.datetime_utc '2024-11-27 00:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3C16 # _exptl.entry_id 3C16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C16 _cell.length_a 118.331 _cell.length_b 133.527 _cell.length_c 70.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O1B ATP . A ATP 1 1_555 D CA CA . A CA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 G O3A ATP . A ATP 1 1_555 D CA CA . A CA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 G O3G ATP . A ATP 1 1_555 D CA CA . A CA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc4 G O1A ATP . A ATP 1 1_555 E CA CA . A CA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc5 K O HOH . A HOH 2 1_555 E CA CA . A CA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc6 D CA CA . A CA 29 1_555 A OD2 ASP 41 A ASP 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 D CA CA . A CA 29 1_555 A O ILE 42 A ILE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc8 D CA CA . A CA 29 1_555 A OD2 ASP 85 A ASP 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc9 E CA CA . A CA 30 1_555 A OD2 ASP 41 A ASP 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc10 E CA CA . A CA 30 1_555 A OD1 ASP 41 A ASP 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc11 E CA CA . A CA 30 1_555 A OD1 ASP 85 A ASP 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc12 C OG SER 54 C SER 51 1_555 I MG MG . C MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc13 C OG1 THR 204 C THR 182 1_555 I MG MG . C MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc14 J O2G GSP . C GSP 395 1_555 I MG MG . C MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc15 J O2B GSP . C GSP 395 1_555 I MG MG . C MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3C16 _atom_sites.fract_transf_matrix[1][1] 0.008451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 29 29 CA CA . E 4 CA A 1 30 30 CA CA . F 5 FOK A 1 101 101 FOK FOK . G 6 ATP A 1 1 1 ATP ATP . H 7 CL C 1 397 397 CL CL . I 8 MG C 1 398 398 MG MG . J 9 GSP C 1 395 395 GSP GSP . K 10 HOH A 1 2 2 HOH HOH . K 10 HOH A 2 3 3 HOH HOH . K 10 HOH A 3 4 4 HOH HOH . K 10 HOH A 4 5 5 HOH HOH . K 10 HOH A 5 6 6 HOH HOH . K 10 HOH A 6 7 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 6 57.625 5.665 11.488 1 35.28 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . G 6 58.18 5.724 9.958 1 31.41 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . G 6 57.514 4.081 11.835 1 34.9 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . G 6 56.322 6.362 11.667 1 31.01 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . G 6 59.378 7.794 12.231 1 51.09 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . G 6 58.928 8.337 10.93 1 49.65 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . G 6 60.827 7.764 12.54 1 38.85 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . G 6 58.814 6.273 12.411 1 42.61 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . G 6 58.038 8.018 14.817 1 58.01 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . G 6 56.735 7.348 14.564 1 54.29 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . G 6 59.137 7.247 15.447 1 56.56 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . G 6 58.601 8.668 13.414 1 51.54 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . G 6 57.775 9.341 15.748 1 56.69 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . G 6 58.23 9.429 17.134 1 52.41 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . G 6 57.202 10.125 18.08 1 48.9 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . G 6 57.635 11.459 18.473 1 43.74 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . G 6 55.867 10.356 17.37 1 43.75 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . G 6 54.989 9.253 17.634 1 51.22 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . G 6 55.341 11.686 17.959 1 50.37 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . G 6 54.114 11.488 18.675 1 50.26 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . G 6 56.444 12.166 18.92 1 45.29 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . G 6 56.694 13.665 18.884 1 63.47 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . G 6 57.876 14.237 18.645 1 62.68 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . G 6 57.767 15.565 18.687 1 61.83 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . G 6 56.503 15.862 18.957 1 60.8 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . G 6 55.808 17.065 19.121 1 64.5 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . G 6 56.425 18.241 19.008 1 65.58 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . G 6 54.492 17.025 19.398 1 64.12 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . G 6 53.866 15.859 19.517 1 64.97 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . G 6 54.5 14.698 19.363 1 67.36 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . G 6 55.818 14.658 19.086 1 63.09 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #