data_3C1J # _model_server_result.job_id Dbz0fQ797AWvB_l2mAtkig _model_server_result.datetime_utc '2024-10-20 01:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":427}' # _entry.id 3C1J # _exptl.entry_id 3C1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3C1J _cell.length_a 110.23 _cell.length_b 110.23 _cell.length_c 84.642 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 110.23 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.115 95.46198 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 3C1J _atom_sites.fract_transf_matrix[1][1] 0.009072 _atom_sites.fract_transf_matrix[1][2] 0.005238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 425 2 ACT ACT . C 3 IMD A 1 426 1 IMD IMD . D 4 GOL A 1 427 3 GOL GOL . E 5 HOH A 1 428 1 HOH HOH . E 5 HOH A 2 429 2 HOH HOH . E 5 HOH A 3 430 3 HOH HOH . E 5 HOH A 4 431 4 HOH HOH . E 5 HOH A 5 432 5 HOH HOH . E 5 HOH A 6 433 6 HOH HOH . E 5 HOH A 7 434 7 HOH HOH . E 5 HOH A 8 435 8 HOH HOH . E 5 HOH A 9 436 9 HOH HOH . E 5 HOH A 10 437 10 HOH HOH . E 5 HOH A 11 438 11 HOH HOH . E 5 HOH A 12 439 12 HOH HOH . E 5 HOH A 13 440 13 HOH HOH . E 5 HOH A 14 441 14 HOH HOH . E 5 HOH A 15 442 15 HOH HOH . E 5 HOH A 16 443 16 HOH HOH . E 5 HOH A 17 444 17 HOH HOH . E 5 HOH A 18 445 18 HOH HOH . E 5 HOH A 19 446 19 HOH HOH . E 5 HOH A 20 447 20 HOH HOH . E 5 HOH A 21 448 21 HOH HOH . E 5 HOH A 22 449 22 HOH HOH . E 5 HOH A 23 450 23 HOH HOH . E 5 HOH A 24 451 24 HOH HOH . E 5 HOH A 25 452 25 HOH HOH . E 5 HOH A 26 453 26 HOH HOH . E 5 HOH A 27 454 27 HOH HOH . E 5 HOH A 28 455 28 HOH HOH . E 5 HOH A 29 456 29 HOH HOH . E 5 HOH A 30 457 30 HOH HOH . E 5 HOH A 31 458 31 HOH HOH . E 5 HOH A 32 459 32 HOH HOH . E 5 HOH A 33 460 33 HOH HOH . E 5 HOH A 34 461 34 HOH HOH . E 5 HOH A 35 462 35 HOH HOH . E 5 HOH A 36 463 36 HOH HOH . E 5 HOH A 37 464 37 HOH HOH . E 5 HOH A 38 465 38 HOH HOH . E 5 HOH A 39 466 39 HOH HOH . E 5 HOH A 40 467 40 HOH HOH . E 5 HOH A 41 468 41 HOH HOH . E 5 HOH A 42 469 42 HOH HOH . E 5 HOH A 43 470 43 HOH HOH . E 5 HOH A 44 471 44 HOH HOH . E 5 HOH A 45 472 45 HOH HOH . E 5 HOH A 46 473 46 HOH HOH . E 5 HOH A 47 474 47 HOH HOH . E 5 HOH A 48 475 48 HOH HOH . E 5 HOH A 49 476 49 HOH HOH . E 5 HOH A 50 477 50 HOH HOH . E 5 HOH A 51 478 51 HOH HOH . E 5 HOH A 52 479 52 HOH HOH . E 5 HOH A 53 480 53 HOH HOH . E 5 HOH A 54 481 54 HOH HOH . E 5 HOH A 55 482 55 HOH HOH . E 5 HOH A 56 483 56 HOH HOH . E 5 HOH A 57 484 57 HOH HOH . E 5 HOH A 58 485 58 HOH HOH . E 5 HOH A 59 486 59 HOH HOH . E 5 HOH A 60 487 60 HOH HOH . E 5 HOH A 61 488 61 HOH HOH . E 5 HOH A 62 489 62 HOH HOH . E 5 HOH A 63 490 63 HOH HOH . E 5 HOH A 64 491 64 HOH HOH . E 5 HOH A 65 492 65 HOH HOH . E 5 HOH A 66 493 66 HOH HOH . E 5 HOH A 67 494 67 HOH HOH . E 5 HOH A 68 495 68 HOH HOH . E 5 HOH A 69 496 69 HOH HOH . E 5 HOH A 70 497 70 HOH HOH . E 5 HOH A 71 498 71 HOH HOH . E 5 HOH A 72 499 72 HOH HOH . E 5 HOH A 73 500 73 HOH HOH . E 5 HOH A 74 501 74 HOH HOH . E 5 HOH A 75 502 75 HOH HOH . E 5 HOH A 76 503 76 HOH HOH . E 5 HOH A 77 504 77 HOH HOH . E 5 HOH A 78 505 78 HOH HOH . E 5 HOH A 79 506 79 HOH HOH . E 5 HOH A 80 507 80 HOH HOH . E 5 HOH A 81 508 81 HOH HOH . E 5 HOH A 82 509 82 HOH HOH . E 5 HOH A 83 510 83 HOH HOH . E 5 HOH A 84 511 84 HOH HOH . E 5 HOH A 85 512 85 HOH HOH . E 5 HOH A 86 513 86 HOH HOH . E 5 HOH A 87 514 87 HOH HOH . E 5 HOH A 88 515 88 HOH HOH . E 5 HOH A 89 516 89 HOH HOH . E 5 HOH A 90 517 90 HOH HOH . E 5 HOH A 91 518 91 HOH HOH . E 5 HOH A 92 519 92 HOH HOH . E 5 HOH A 93 520 93 HOH HOH . E 5 HOH A 94 521 94 HOH HOH . E 5 HOH A 95 522 95 HOH HOH . E 5 HOH A 96 523 96 HOH HOH . E 5 HOH A 97 524 97 HOH HOH . E 5 HOH A 98 525 98 HOH HOH . E 5 HOH A 99 526 99 HOH HOH . E 5 HOH A 100 527 100 HOH HOH . E 5 HOH A 101 528 101 HOH HOH . E 5 HOH A 102 529 102 HOH HOH . E 5 HOH A 103 530 103 HOH HOH . E 5 HOH A 104 531 104 HOH HOH . E 5 HOH A 105 532 105 HOH HOH . E 5 HOH A 106 533 106 HOH HOH . E 5 HOH A 107 534 107 HOH HOH . E 5 HOH A 108 535 108 HOH HOH . E 5 HOH A 109 536 109 HOH HOH . E 5 HOH A 110 537 110 HOH HOH . E 5 HOH A 111 538 111 HOH HOH . E 5 HOH A 112 539 112 HOH HOH . E 5 HOH A 113 540 113 HOH HOH . E 5 HOH A 114 541 114 HOH HOH . E 5 HOH A 115 542 115 HOH HOH . E 5 HOH A 116 543 116 HOH HOH . E 5 HOH A 117 544 117 HOH HOH . E 5 HOH A 118 545 118 HOH HOH . E 5 HOH A 119 546 119 HOH HOH . E 5 HOH A 120 547 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 44.208 15.905 27.342 1 83.46 ? C1 GOL 427 A 1 HETATM 2 O O1 GOL . . . D 4 44.239 14.932 26.321 1 66.23 ? O1 GOL 427 A 1 HETATM 3 C C2 GOL . . . D 4 45.175 15.551 28.471 1 82.15 ? C2 GOL 427 A 1 HETATM 4 O O2 GOL . . . D 4 45.286 14.15 28.603 1 88.7 ? O2 GOL 427 A 1 HETATM 5 C C3 GOL . . . D 4 44.66 16.135 29.784 1 86.81 ? C3 GOL 427 A 1 HETATM 6 O O3 GOL . . . D 4 45.101 17.467 29.932 1 82.78 ? O3 GOL 427 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #