data_3C23
#
_model_server_result.job_id            '_NRJJMSbQ5C4jmjoT4y2AA' 
_model_server_result.datetime_utc      '2024-11-09 02:17:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":612}' 
#
_entry.id    3C23 
#
_exptl.entry_id    3C23 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3C23 
_cell.length_a            88.09 
_cell.length_b            125.17 
_cell.length_c            166.57 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? octameric 8 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2,3,4 
A,C,E 2 1 
B,D,F 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -88.09 0 0 
3 'crystal symmetry operation' 3_456 -x-1,y,-z+1 -1 0 0 0 1 0 0 0 -1 -88.09 0 166.57 
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 166.57 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                3AT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CORDYCEPIN TRIPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G 3AT doub 1 n n 
PG O2G 3AT sing 2 n n 
PG O3G 3AT sing 3 n n 
PG O3B 3AT sing 4 n n 
O2G HOG2 3AT sing 5 n n 
O3G HOG3 3AT sing 6 n n 
PB O1B 3AT doub 7 n n 
PB O2B 3AT sing 8 n n 
PB O3B 3AT sing 9 n n 
PB O3A 3AT sing 10 n n 
O2B HOB2 3AT sing 11 n n 
PA O1A 3AT doub 12 n n 
PA O2A 3AT sing 13 n n 
PA O3A 3AT sing 14 n n 
PA O5' 3AT sing 15 n n 
O2A HOA2 3AT sing 16 n n 
O5' C5' 3AT sing 17 n n 
C5' C4' 3AT sing 18 n n 
C5' "H5'1" 3AT sing 19 n n 
C5' "H5'2" 3AT sing 20 n n 
C4' O4' 3AT sing 21 n n 
C4' C3' 3AT sing 22 n n 
C4' H4' 3AT sing 23 n n 
O4' C1' 3AT sing 24 n n 
C3' C2' 3AT sing 25 n n 
C3' "H3'1" 3AT sing 26 n n 
C3' "H3'2" 3AT sing 27 n n 
C2' O2' 3AT sing 28 n n 
C2' C1' 3AT sing 29 n n 
C2' "H2'1" 3AT sing 30 n n 
O2' HO2' 3AT sing 31 n n 
C1' N9 3AT sing 32 n n 
C1' H1' 3AT sing 33 n n 
N9 C8 3AT sing 34 n y 
N9 C4 3AT sing 35 n y 
C8 N7 3AT doub 36 n y 
C8 H8 3AT sing 37 n n 
N7 C5 3AT sing 38 n y 
C5 C6 3AT sing 39 n y 
C5 C4 3AT doub 40 n y 
C6 N6 3AT sing 41 n n 
C6 N1 3AT doub 42 n y 
N6 HN61 3AT sing 43 n n 
N6 HN62 3AT sing 44 n n 
N1 C2 3AT sing 45 n y 
C2 N3 3AT doub 46 n y 
C2 H2 3AT sing 47 n n 
N3 C4 3AT sing 48 n y 
#
_atom_sites.entry_id                     3C23 
_atom_sites.fract_transf_matrix[1][1]    0.011352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007989 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3AT A 1 611 611 3AT 3AT . 
D 2 3AT B 1 612 612 3AT 3AT . 
E 3 HOH A 1 612 2 HOH TIP . 
E 3 HOH A 2 613 4 HOH TIP . 
E 3 HOH A 3 614 5 HOH TIP . 
E 3 HOH A 4 615 8 HOH TIP . 
E 3 HOH A 5 616 13 HOH TIP . 
E 3 HOH A 6 617 14 HOH TIP . 
E 3 HOH A 7 618 15 HOH TIP . 
E 3 HOH A 8 619 16 HOH TIP . 
E 3 HOH A 9 620 17 HOH TIP . 
E 3 HOH A 10 621 22 HOH TIP . 
E 3 HOH A 11 622 25 HOH TIP . 
E 3 HOH A 12 623 26 HOH TIP . 
E 3 HOH A 13 624 28 HOH TIP . 
E 3 HOH A 14 625 31 HOH TIP . 
E 3 HOH A 15 626 32 HOH TIP . 
E 3 HOH A 16 627 33 HOH TIP . 
E 3 HOH A 17 628 36 HOH TIP . 
E 3 HOH A 18 629 39 HOH TIP . 
E 3 HOH A 19 630 40 HOH TIP . 
E 3 HOH A 20 631 42 HOH TIP . 
E 3 HOH A 21 632 43 HOH TIP . 
E 3 HOH A 22 633 45 HOH TIP . 
E 3 HOH A 23 634 51 HOH TIP . 
E 3 HOH A 24 635 57 HOH TIP . 
E 3 HOH A 25 636 58 HOH TIP . 
E 3 HOH A 26 637 60 HOH TIP . 
E 3 HOH A 27 638 63 HOH TIP . 
E 3 HOH A 28 639 64 HOH TIP . 
E 3 HOH A 29 640 66 HOH TIP . 
E 3 HOH A 30 641 68 HOH TIP . 
E 3 HOH A 31 642 70 HOH TIP . 
E 3 HOH A 32 643 76 HOH TIP . 
E 3 HOH A 33 644 78 HOH TIP . 
E 3 HOH A 34 645 80 HOH TIP . 
E 3 HOH A 35 646 81 HOH TIP . 
E 3 HOH A 36 647 82 HOH TIP . 
E 3 HOH A 37 648 83 HOH TIP . 
E 3 HOH A 38 649 86 HOH TIP . 
E 3 HOH A 39 650 87 HOH TIP . 
E 3 HOH A 40 651 88 HOH TIP . 
E 3 HOH A 41 652 89 HOH TIP . 
E 3 HOH A 42 653 90 HOH TIP . 
E 3 HOH A 43 654 92 HOH TIP . 
E 3 HOH A 44 655 94 HOH TIP . 
E 3 HOH A 45 656 95 HOH TIP . 
E 3 HOH A 46 657 96 HOH TIP . 
E 3 HOH A 47 658 100 HOH TIP . 
E 3 HOH A 48 659 102 HOH TIP . 
E 3 HOH A 49 660 103 HOH TIP . 
E 3 HOH A 50 661 107 HOH TIP . 
E 3 HOH A 51 662 108 HOH TIP . 
E 3 HOH A 52 663 112 HOH TIP . 
E 3 HOH A 53 664 113 HOH TIP . 
E 3 HOH A 54 665 118 HOH TIP . 
E 3 HOH A 55 666 120 HOH TIP . 
E 3 HOH A 56 667 122 HOH TIP . 
E 3 HOH A 57 668 124 HOH TIP . 
E 3 HOH A 58 669 125 HOH TIP . 
E 3 HOH A 59 670 126 HOH TIP . 
E 3 HOH A 60 671 127 HOH TIP . 
E 3 HOH A 61 672 129 HOH TIP . 
E 3 HOH A 62 673 130 HOH TIP . 
E 3 HOH A 63 674 131 HOH TIP . 
E 3 HOH A 64 675 132 HOH TIP . 
E 3 HOH A 65 676 134 HOH TIP . 
E 3 HOH A 66 677 136 HOH TIP . 
E 3 HOH A 67 678 141 HOH TIP . 
E 3 HOH A 68 679 142 HOH TIP . 
E 3 HOH A 69 680 149 HOH TIP . 
E 3 HOH A 70 681 150 HOH TIP . 
E 3 HOH A 71 682 151 HOH TIP . 
E 3 HOH A 72 683 154 HOH TIP . 
E 3 HOH A 73 684 157 HOH TIP . 
E 3 HOH A 74 685 158 HOH TIP . 
E 3 HOH A 75 686 161 HOH TIP . 
E 3 HOH A 76 687 163 HOH TIP . 
E 3 HOH A 77 688 166 HOH TIP . 
E 3 HOH A 78 689 169 HOH TIP . 
E 3 HOH A 79 690 171 HOH TIP . 
E 3 HOH A 80 691 172 HOH TIP . 
E 3 HOH A 81 692 174 HOH TIP . 
E 3 HOH A 82 693 177 HOH TIP . 
E 3 HOH A 83 694 178 HOH TIP . 
E 3 HOH A 84 695 180 HOH TIP . 
E 3 HOH A 85 696 182 HOH TIP . 
E 3 HOH A 86 697 183 HOH TIP . 
F 3 HOH B 1 613 3 HOH TIP . 
F 3 HOH B 2 614 6 HOH TIP . 
F 3 HOH B 3 615 7 HOH TIP . 
F 3 HOH B 4 616 9 HOH TIP . 
F 3 HOH B 5 617 10 HOH TIP . 
F 3 HOH B 6 618 11 HOH TIP . 
F 3 HOH B 7 619 12 HOH TIP . 
F 3 HOH B 8 620 18 HOH TIP . 
F 3 HOH B 9 621 19 HOH TIP . 
F 3 HOH B 10 622 20 HOH TIP . 
F 3 HOH B 11 623 21 HOH TIP . 
F 3 HOH B 12 624 23 HOH TIP . 
F 3 HOH B 13 625 24 HOH TIP . 
F 3 HOH B 14 626 27 HOH TIP . 
F 3 HOH B 15 627 29 HOH TIP . 
F 3 HOH B 16 628 30 HOH TIP . 
F 3 HOH B 17 629 34 HOH TIP . 
F 3 HOH B 18 630 35 HOH TIP . 
F 3 HOH B 19 631 37 HOH TIP . 
F 3 HOH B 20 632 38 HOH TIP . 
F 3 HOH B 21 633 41 HOH TIP . 
F 3 HOH B 22 634 44 HOH TIP . 
F 3 HOH B 23 635 46 HOH TIP . 
F 3 HOH B 24 636 47 HOH TIP . 
F 3 HOH B 25 637 48 HOH TIP . 
F 3 HOH B 26 638 49 HOH TIP . 
F 3 HOH B 27 639 50 HOH TIP . 
F 3 HOH B 28 640 52 HOH TIP . 
F 3 HOH B 29 641 53 HOH TIP . 
F 3 HOH B 30 642 54 HOH TIP . 
F 3 HOH B 31 643 55 HOH TIP . 
F 3 HOH B 32 644 56 HOH TIP . 
F 3 HOH B 33 645 59 HOH TIP . 
F 3 HOH B 34 646 61 HOH TIP . 
F 3 HOH B 35 647 62 HOH TIP . 
F 3 HOH B 36 648 65 HOH TIP . 
F 3 HOH B 37 649 67 HOH TIP . 
F 3 HOH B 38 650 69 HOH TIP . 
F 3 HOH B 39 651 71 HOH TIP . 
F 3 HOH B 40 652 72 HOH TIP . 
F 3 HOH B 41 653 73 HOH TIP . 
F 3 HOH B 42 654 74 HOH TIP . 
F 3 HOH B 43 655 75 HOH TIP . 
F 3 HOH B 44 656 77 HOH TIP . 
F 3 HOH B 45 657 79 HOH TIP . 
F 3 HOH B 46 658 84 HOH TIP . 
F 3 HOH B 47 659 85 HOH TIP . 
F 3 HOH B 48 660 91 HOH TIP . 
F 3 HOH B 49 661 93 HOH TIP . 
F 3 HOH B 50 662 97 HOH TIP . 
F 3 HOH B 51 663 98 HOH TIP . 
F 3 HOH B 52 664 99 HOH TIP . 
F 3 HOH B 53 665 101 HOH TIP . 
F 3 HOH B 54 666 104 HOH TIP . 
F 3 HOH B 55 667 105 HOH TIP . 
F 3 HOH B 56 668 106 HOH TIP . 
F 3 HOH B 57 669 109 HOH TIP . 
F 3 HOH B 58 670 110 HOH TIP . 
F 3 HOH B 59 671 111 HOH TIP . 
F 3 HOH B 60 672 114 HOH TIP . 
F 3 HOH B 61 673 115 HOH TIP . 
F 3 HOH B 62 674 116 HOH TIP . 
F 3 HOH B 63 675 117 HOH TIP . 
F 3 HOH B 64 676 119 HOH TIP . 
F 3 HOH B 65 677 121 HOH TIP . 
F 3 HOH B 66 678 123 HOH TIP . 
F 3 HOH B 67 679 128 HOH TIP . 
F 3 HOH B 68 680 133 HOH TIP . 
F 3 HOH B 69 681 135 HOH TIP . 
F 3 HOH B 70 682 137 HOH TIP . 
F 3 HOH B 71 683 138 HOH TIP . 
F 3 HOH B 72 684 139 HOH TIP . 
F 3 HOH B 73 685 140 HOH TIP . 
F 3 HOH B 74 686 143 HOH TIP . 
F 3 HOH B 75 687 144 HOH TIP . 
F 3 HOH B 76 688 145 HOH TIP . 
F 3 HOH B 77 689 146 HOH TIP . 
F 3 HOH B 78 690 147 HOH TIP . 
F 3 HOH B 79 691 148 HOH TIP . 
F 3 HOH B 80 692 152 HOH TIP . 
F 3 HOH B 81 693 153 HOH TIP . 
F 3 HOH B 82 694 155 HOH TIP . 
F 3 HOH B 83 695 156 HOH TIP . 
F 3 HOH B 84 696 159 HOH TIP . 
F 3 HOH B 85 697 160 HOH TIP . 
F 3 HOH B 86 698 162 HOH TIP . 
F 3 HOH B 87 699 164 HOH TIP . 
F 3 HOH B 88 700 165 HOH TIP . 
F 3 HOH B 89 701 167 HOH TIP . 
F 3 HOH B 90 702 168 HOH TIP . 
F 3 HOH B 91 703 170 HOH TIP . 
F 3 HOH B 92 704 173 HOH TIP . 
F 3 HOH B 93 705 175 HOH TIP . 
F 3 HOH B 94 706 176 HOH TIP . 
F 3 HOH B 95 707 179 HOH TIP . 
F 3 HOH B 96 708 181 HOH TIP . 
F 3 HOH B 97 709 184 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG 3AT . . . D 2 -30.291 -8.256 76.112 1 42.04 ? PG 3AT 612 B 1 
HETATM 2 O O1G 3AT . . . D 2 -29.383 -7.288 76.766 1 40.8 ? O1G 3AT 612 B 1 
HETATM 3 O O2G 3AT . . . D 2 -30.853 -7.729 74.698 1 42.95 ? O2G 3AT 612 B 1 
HETATM 4 O O3G 3AT . . . D 2 -29.584 -9.669 75.806 1 42.81 ? O3G 3AT 612 B 1 
HETATM 5 P PB 3AT . . . D 2 -31.843 -10.101 77.513 1 35.41 ? PB 3AT 612 B 1 
HETATM 6 O O1B 3AT . . . D 2 -32.861 -10.18 78.585 1 37.64 ? O1B 3AT 612 B 1 
HETATM 7 O O2B 3AT . . . D 2 -32.246 -10.948 76.205 1 36.77 ? O2B 3AT 612 B 1 
HETATM 8 O O3B 3AT . . . D 2 -31.589 -8.595 77.003 1 40.18 ? O3B 3AT 612 B 1 
HETATM 9 P PA 3AT . . . D 2 -30.224 -11.304 79.439 1 41.66 ? PA 3AT 612 B 1 
HETATM 10 O O1A 3AT . . . D 2 -29.16 -12.333 79.485 1 36.48 ? O1A 3AT 612 B 1 
HETATM 11 O O2A 3AT . . . D 2 -29.943 -10.07 80.433 1 39.88 ? O2A 3AT 612 B 1 
HETATM 12 O O3A 3AT . . . D 2 -30.405 -10.659 77.975 1 38.06 ? O3A 3AT 612 B 1 
HETATM 13 O O5' 3AT . . . D 2 -31.669 -11.882 79.848 1 32.72 ? O5' 3AT 612 B 1 
HETATM 14 C C5' 3AT . . . D 2 -31.832 -12.598 81.076 1 25.31 ? C5' 3AT 612 B 1 
HETATM 15 C C4' 3AT . . . D 2 -32.266 -14.041 80.815 1 20.48 ? C4' 3AT 612 B 1 
HETATM 16 O O4' 3AT . . . D 2 -31.133 -14.815 80.394 1 18.65 ? O4' 3AT 612 B 1 
HETATM 17 C C3' 3AT . . . D 2 -32.69 -14.693 82.133 1 19.5 ? C3' 3AT 612 B 1 
HETATM 18 C C2' 3AT . . . D 2 -32.193 -16.134 82.006 1 19.53 ? C2' 3AT 612 B 1 
HETATM 19 O O2' 3AT . . . D 2 -33.309 -17.027 82.026 1 22.57 ? O2' 3AT 612 B 1 
HETATM 20 C C1' 3AT . . . D 2 -31.531 -16.174 80.627 1 17.05 ? C1' 3AT 612 B 1 
HETATM 21 N N9 3AT . . . D 2 -30.331 -17.038 80.68 1 13.96 ? N9 3AT 612 B 1 
HETATM 22 C C8 3AT . . . D 2 -29.064 -16.622 80.666 1 12.66 ? C8 3AT 612 B 1 
HETATM 23 N N7 3AT . . . D 2 -28.253 -17.678 80.726 1 11.59 ? N7 3AT 612 B 1 
HETATM 24 C C5 3AT . . . D 2 -29.007 -18.77 80.778 1 13.57 ? C5 3AT 612 B 1 
HETATM 25 C C6 3AT . . . D 2 -28.727 -20.126 80.85 1 12.19 ? C6 3AT 612 B 1 
HETATM 26 N N6 3AT . . . D 2 -27.468 -20.555 80.88 1 15.25 ? N6 3AT 612 B 1 
HETATM 27 N N1 3AT . . . D 2 -29.745 -20.997 80.889 1 8.69 ? N1 3AT 612 B 1 
HETATM 28 C C2 3AT . . . D 2 -30.999 -20.575 80.859 1 12.41 ? C2 3AT 612 B 1 
HETATM 29 N N3 3AT . . . D 2 -31.299 -19.287 80.79 1 10.86 ? N3 3AT 612 B 1 
HETATM 30 C C4 3AT . . . D 2 -30.327 -18.365 80.748 1 12.4 ? C4 3AT 612 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#