data_3C26 # _model_server_result.job_id -80vXY2B0tfXZaODubfRsQ _model_server_result.datetime_utc '2025-08-07 17:03:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":273}' # _entry.id 3C26 # _exptl.entry_id 3C26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C26 _cell.length_a 86.82 _cell.length_b 86.82 _cell.length_c 67.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.82 86.82 33.63 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 173 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A C THR 44 A THR 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 45 A MSE 44 1_555 A N ASP 46 A ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C HIS 76 A HIS 75 1_555 A N MSE 77 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 77 A MSE 76 1_555 A N GLU 78 A GLU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale5 A C VAL 85 A VAL 84 1_555 A N MSE 86 A MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 86 A MSE 85 1_555 A N LEU 87 A LEU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale7 A C GLY 102 A GLY 101 1_555 A N MSE 103 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale8 A C MSE 103 A MSE 102 1_555 A N SER 104 A SER 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale9 A C ILE 105 A ILE 104 1_555 A N MSE 106 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale10 A C MSE 106 A MSE 105 1_555 A N GLN 107 A GLN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 A C TYR 181 A TYR 180 1_555 A N MSE 182 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale12 A C MSE 182 A MSE 181 1_555 A N CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale13 A C SER 234 A SER 233 1_555 A N MSE 235 A MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale14 A C MSE 235 A MSE 234 1_555 A N ASN 236 A ASN 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3C26 _atom_sites.fract_transf_matrix[1][1] 0.011518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 266 1 NO3 NO3 . C 2 NO3 A 1 267 2 NO3 NO3 . D 2 NO3 A 1 268 3 NO3 NO3 . E 3 EDO A 1 269 4 EDO EDO . F 3 EDO A 1 270 5 EDO EDO . G 3 EDO A 1 271 6 EDO EDO . H 3 EDO A 1 272 7 EDO EDO . I 3 EDO A 1 273 8 EDO EDO . J 4 HOH A 1 274 9 HOH HOH . J 4 HOH A 2 275 10 HOH HOH . J 4 HOH A 3 276 11 HOH HOH . J 4 HOH A 4 277 12 HOH HOH . J 4 HOH A 5 278 13 HOH HOH . J 4 HOH A 6 279 14 HOH HOH . J 4 HOH A 7 280 15 HOH HOH . J 4 HOH A 8 281 16 HOH HOH . J 4 HOH A 9 282 17 HOH HOH . J 4 HOH A 10 283 18 HOH HOH . J 4 HOH A 11 284 19 HOH HOH . J 4 HOH A 12 285 20 HOH HOH . J 4 HOH A 13 286 21 HOH HOH . J 4 HOH A 14 287 22 HOH HOH . J 4 HOH A 15 288 23 HOH HOH . J 4 HOH A 16 289 24 HOH HOH . J 4 HOH A 17 290 25 HOH HOH . J 4 HOH A 18 291 26 HOH HOH . J 4 HOH A 19 292 27 HOH HOH . J 4 HOH A 20 293 28 HOH HOH . J 4 HOH A 21 294 29 HOH HOH . J 4 HOH A 22 295 30 HOH HOH . J 4 HOH A 23 296 31 HOH HOH . J 4 HOH A 24 297 32 HOH HOH . J 4 HOH A 25 298 33 HOH HOH . J 4 HOH A 26 299 34 HOH HOH . J 4 HOH A 27 300 35 HOH HOH . J 4 HOH A 28 301 36 HOH HOH . J 4 HOH A 29 302 37 HOH HOH . J 4 HOH A 30 303 38 HOH HOH . J 4 HOH A 31 304 39 HOH HOH . J 4 HOH A 32 305 40 HOH HOH . J 4 HOH A 33 306 41 HOH HOH . J 4 HOH A 34 307 42 HOH HOH . J 4 HOH A 35 308 43 HOH HOH . J 4 HOH A 36 309 44 HOH HOH . J 4 HOH A 37 310 45 HOH HOH . J 4 HOH A 38 311 46 HOH HOH . J 4 HOH A 39 312 47 HOH HOH . J 4 HOH A 40 313 49 HOH HOH . J 4 HOH A 41 314 50 HOH HOH . J 4 HOH A 42 315 51 HOH HOH . J 4 HOH A 43 316 52 HOH HOH . J 4 HOH A 44 317 53 HOH HOH . J 4 HOH A 45 318 54 HOH HOH . J 4 HOH A 46 319 55 HOH HOH . J 4 HOH A 47 320 56 HOH HOH . J 4 HOH A 48 321 57 HOH HOH . J 4 HOH A 49 322 58 HOH HOH . J 4 HOH A 50 323 59 HOH HOH . J 4 HOH A 51 324 60 HOH HOH . J 4 HOH A 52 325 61 HOH HOH . J 4 HOH A 53 326 62 HOH HOH . J 4 HOH A 54 327 63 HOH HOH . J 4 HOH A 55 328 64 HOH HOH . J 4 HOH A 56 329 65 HOH HOH . J 4 HOH A 57 330 66 HOH HOH . J 4 HOH A 58 331 67 HOH HOH . J 4 HOH A 59 332 68 HOH HOH . J 4 HOH A 60 333 69 HOH HOH . J 4 HOH A 61 334 70 HOH HOH . J 4 HOH A 62 335 71 HOH HOH . J 4 HOH A 63 336 72 HOH HOH . J 4 HOH A 64 337 73 HOH HOH . J 4 HOH A 65 338 74 HOH HOH . J 4 HOH A 66 339 75 HOH HOH . J 4 HOH A 67 340 76 HOH HOH . J 4 HOH A 68 341 77 HOH HOH . J 4 HOH A 69 342 78 HOH HOH . J 4 HOH A 70 343 79 HOH HOH . J 4 HOH A 71 344 80 HOH HOH . J 4 HOH A 72 345 81 HOH HOH . J 4 HOH A 73 346 82 HOH HOH . J 4 HOH A 74 347 83 HOH HOH . J 4 HOH A 75 348 84 HOH HOH . J 4 HOH A 76 349 85 HOH HOH . J 4 HOH A 77 350 86 HOH HOH . J 4 HOH A 78 351 87 HOH HOH . J 4 HOH A 79 352 88 HOH HOH . J 4 HOH A 80 353 89 HOH HOH . J 4 HOH A 81 354 90 HOH HOH . J 4 HOH A 82 355 91 HOH HOH . J 4 HOH A 83 356 92 HOH HOH . J 4 HOH A 84 357 93 HOH HOH . J 4 HOH A 85 358 94 HOH HOH . J 4 HOH A 86 359 95 HOH HOH . J 4 HOH A 87 360 96 HOH HOH . J 4 HOH A 88 361 97 HOH HOH . J 4 HOH A 89 362 98 HOH HOH . J 4 HOH A 90 363 99 HOH HOH . J 4 HOH A 91 364 100 HOH HOH . J 4 HOH A 92 365 101 HOH HOH . J 4 HOH A 93 366 102 HOH HOH . J 4 HOH A 94 367 103 HOH HOH . J 4 HOH A 95 368 104 HOH HOH . J 4 HOH A 96 369 105 HOH HOH . J 4 HOH A 97 370 106 HOH HOH . J 4 HOH A 98 371 107 HOH HOH . J 4 HOH A 99 372 108 HOH HOH . J 4 HOH A 100 373 109 HOH HOH . J 4 HOH A 101 374 110 HOH HOH . J 4 HOH A 102 375 111 HOH HOH . J 4 HOH A 103 376 112 HOH HOH . J 4 HOH A 104 377 113 HOH HOH . J 4 HOH A 105 378 114 HOH HOH . J 4 HOH A 106 379 115 HOH HOH . J 4 HOH A 107 380 116 HOH HOH . J 4 HOH A 108 381 117 HOH HOH . J 4 HOH A 109 382 118 HOH HOH . J 4 HOH A 110 383 119 HOH HOH . J 4 HOH A 111 384 120 HOH HOH . J 4 HOH A 112 385 121 HOH HOH . J 4 HOH A 113 386 122 HOH HOH . J 4 HOH A 114 387 123 HOH HOH . J 4 HOH A 115 388 124 HOH HOH . J 4 HOH A 116 389 125 HOH HOH . J 4 HOH A 117 390 126 HOH HOH . J 4 HOH A 118 391 127 HOH HOH . J 4 HOH A 119 392 128 HOH HOH . J 4 HOH A 120 393 129 HOH HOH . J 4 HOH A 121 394 130 HOH HOH . J 4 HOH A 122 395 131 HOH HOH . J 4 HOH A 123 396 132 HOH HOH . J 4 HOH A 124 397 133 HOH HOH . J 4 HOH A 125 398 134 HOH HOH . J 4 HOH A 126 399 135 HOH HOH . J 4 HOH A 127 400 136 HOH HOH . J 4 HOH A 128 401 137 HOH HOH . J 4 HOH A 129 402 138 HOH HOH . J 4 HOH A 130 403 139 HOH HOH . J 4 HOH A 131 404 140 HOH HOH . J 4 HOH A 132 405 141 HOH HOH . J 4 HOH A 133 406 142 HOH HOH . J 4 HOH A 134 407 143 HOH HOH . J 4 HOH A 135 408 144 HOH HOH . J 4 HOH A 136 409 145 HOH HOH . J 4 HOH A 137 410 146 HOH HOH . J 4 HOH A 138 411 147 HOH HOH . J 4 HOH A 139 412 148 HOH HOH . J 4 HOH A 140 413 149 HOH HOH . J 4 HOH A 141 414 150 HOH HOH . J 4 HOH A 142 415 151 HOH HOH . J 4 HOH A 143 416 152 HOH HOH . J 4 HOH A 144 417 153 HOH HOH . J 4 HOH A 145 418 154 HOH HOH . J 4 HOH A 146 419 155 HOH HOH . J 4 HOH A 147 420 156 HOH HOH . J 4 HOH A 148 421 157 HOH HOH . J 4 HOH A 149 422 158 HOH HOH . J 4 HOH A 150 423 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 44.531 30.994 6.054 1 47.01 ? C1 EDO 273 A 1 HETATM 2 O O1 EDO . . . I 3 45.729 30.843 6.835 1 44.53 ? O1 EDO 273 A 1 HETATM 3 C C2 EDO . . . I 3 44.703 30.374 4.68 1 46.58 ? C2 EDO 273 A 1 HETATM 4 O O2 EDO . . . I 3 44.977 28.989 4.855 1 49.3 ? O2 EDO 273 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #