data_3C27
#
_model_server_result.job_id            CPdZfy00b2trjYSXQ9Tkhw 
_model_server_result.datetime_utc      '2024-12-27 00:50:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c27 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":5000}' 
#
_entry.id    3C27 
#
_exptl.entry_id    3C27 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              435.403 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-(carbamimidamidooxy)ethyl]-2-{6-cyano-3-[(2,2-difluoro-2-pyridin-2-ylethyl)amino]-2-fluorophenyl}acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.5 
_cell.angle_gamma         90 
_cell.entry_id            3C27 
_cell.length_a            70.854 
_cell.length_b            72.026 
_cell.length_c            72.987 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C27 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 9 1_555 B SG CYS 119 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 B SG CYS 28 B CYS 64 1_555 B SG CYS 44 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 173 B CYS 203 1_555 B SG CYS 187 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
disulf ? disulf4 B SG CYS 201 B CYS 231 1_555 B SG CYS 231 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C19 H20 F3 N7 O2' 
_chem_comp.formula_weight    435.403 
_chem_comp.id                DKK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-(carbamimidamidooxy)ethyl]-2-{6-cyano-3-[(2,2-difluoro-2-pyridin-2-ylethyl)amino]-2-fluorophenyl}acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 DKK doub 83 n n 
C1 N3 DKK sing 84 n n 
C1 N4 DKK sing 85 n n 
O5 N4 DKK sing 86 n n 
O5 C6 DKK sing 87 n n 
C7 C6 DKK sing 88 n n 
C7 N8 DKK sing 89 n n 
C9 C11 DKK sing 90 n n 
C9 N8 DKK sing 91 n n 
C9 O10 DKK doub 92 n n 
C11 C12 DKK sing 93 n n 
C12 C13 DKK doub 94 n y 
C12 C17 DKK sing 95 n y 
C13 C14 DKK sing 96 n y 
C13 C19 DKK sing 97 n n 
C14 C15 DKK doub 98 n y 
C15 C16 DKK sing 99 n y 
C16 C17 DKK doub 100 n y 
C16 N21 DKK sing 101 n n 
C19 N20 DKK trip 102 n n 
C22 N21 DKK sing 103 n n 
C22 C23 DKK sing 104 n n 
C30 C31 DKK doub 105 n y 
C30 C29 DKK sing 106 n y 
C31 C26 DKK sing 107 n y 
C17 F18 DKK sing 108 n n 
C23 F24 DKK sing 109 n n 
C23 F25 DKK sing 110 n n 
C23 C26 DKK sing 111 n n 
C26 N27 DKK doub 112 n y 
N27 C28 DKK sing 113 n y 
C28 C29 DKK doub 114 n y 
C7 H7 DKK sing 115 n n 
C7 H7A DKK sing 116 n n 
C11 H11 DKK sing 117 n n 
C11 H11A DKK sing 118 n n 
C14 H14 DKK sing 119 n n 
C15 H15 DKK sing 120 n n 
C22 H22 DKK sing 121 n n 
C22 H22A DKK sing 122 n n 
C30 H30 DKK sing 123 n n 
C31 H31 DKK sing 124 n n 
N2 HN2 DKK sing 125 n n 
N3 HN3 DKK sing 126 n n 
N3 HN3A DKK sing 127 n n 
N4 HN4 DKK sing 128 n n 
C6 H6 DKK sing 129 n n 
C6 H6A DKK sing 130 n n 
N8 HN8 DKK sing 131 n n 
N21 HN21 DKK sing 132 n n 
C28 H28 DKK sing 133 n n 
C29 H29 DKK sing 134 n n 
#
_atom_sites.entry_id                     3C27 
_atom_sites.fract_transf_matrix[1][1]    0.014114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002617 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013884 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DKK B 1 5000 5000 DKK DKK . 
E 5 HOH A 1 33 23 HOH HOH . 
E 5 HOH A 2 34 36 HOH HOH . 
E 5 HOH A 3 35 39 HOH HOH . 
E 5 HOH A 4 36 55 HOH HOH . 
E 5 HOH A 5 37 59 HOH HOH . 
E 5 HOH A 6 38 69 HOH HOH . 
E 5 HOH A 7 39 79 HOH HOH . 
E 5 HOH A 8 40 84 HOH HOH . 
E 5 HOH A 9 41 100 HOH HOH . 
E 5 HOH A 10 42 105 HOH HOH . 
E 5 HOH A 11 43 107 HOH HOH . 
F 5 HOH B 1 5001 1 HOH HOH . 
F 5 HOH B 2 5002 2 HOH HOH . 
F 5 HOH B 3 5003 3 HOH HOH . 
F 5 HOH B 4 5004 4 HOH HOH . 
F 5 HOH B 5 5005 5 HOH HOH . 
F 5 HOH B 6 5006 6 HOH HOH . 
F 5 HOH B 7 5007 7 HOH HOH . 
F 5 HOH B 8 5008 8 HOH HOH . 
F 5 HOH B 9 5009 9 HOH HOH . 
F 5 HOH B 10 5010 10 HOH HOH . 
F 5 HOH B 11 5011 11 HOH HOH . 
F 5 HOH B 12 5012 12 HOH HOH . 
F 5 HOH B 13 5013 13 HOH HOH . 
F 5 HOH B 14 5014 14 HOH HOH . 
F 5 HOH B 15 5015 15 HOH HOH . 
F 5 HOH B 16 5016 16 HOH HOH . 
F 5 HOH B 17 5017 17 HOH HOH . 
F 5 HOH B 18 5018 18 HOH HOH . 
F 5 HOH B 19 5019 19 HOH HOH . 
F 5 HOH B 20 5020 20 HOH HOH . 
F 5 HOH B 21 5021 21 HOH HOH . 
F 5 HOH B 22 5022 22 HOH HOH . 
F 5 HOH B 23 5023 24 HOH HOH . 
F 5 HOH B 24 5024 25 HOH HOH . 
F 5 HOH B 25 5025 26 HOH HOH . 
F 5 HOH B 26 5026 27 HOH HOH . 
F 5 HOH B 27 5027 28 HOH HOH . 
F 5 HOH B 28 5028 29 HOH HOH . 
F 5 HOH B 29 5029 30 HOH HOH . 
F 5 HOH B 30 5030 31 HOH HOH . 
F 5 HOH B 31 5031 32 HOH HOH . 
F 5 HOH B 32 5032 33 HOH HOH . 
F 5 HOH B 33 5033 34 HOH HOH . 
F 5 HOH B 34 5034 35 HOH HOH . 
F 5 HOH B 35 5035 37 HOH HOH . 
F 5 HOH B 36 5036 38 HOH HOH . 
F 5 HOH B 37 5037 40 HOH HOH . 
F 5 HOH B 38 5038 41 HOH HOH . 
F 5 HOH B 39 5039 42 HOH HOH . 
F 5 HOH B 40 5040 43 HOH HOH . 
F 5 HOH B 41 5041 44 HOH HOH . 
F 5 HOH B 42 5042 45 HOH HOH . 
F 5 HOH B 43 5043 46 HOH HOH . 
F 5 HOH B 44 5044 47 HOH HOH . 
F 5 HOH B 45 5045 48 HOH HOH . 
F 5 HOH B 46 5046 50 HOH HOH . 
F 5 HOH B 47 5047 51 HOH HOH . 
F 5 HOH B 48 5048 52 HOH HOH . 
F 5 HOH B 49 5049 53 HOH HOH . 
F 5 HOH B 50 5050 54 HOH HOH . 
F 5 HOH B 51 5051 56 HOH HOH . 
F 5 HOH B 52 5052 57 HOH HOH . 
F 5 HOH B 53 5053 58 HOH HOH . 
F 5 HOH B 54 5054 60 HOH HOH . 
F 5 HOH B 55 5055 61 HOH HOH . 
F 5 HOH B 56 5056 62 HOH HOH . 
F 5 HOH B 57 5057 63 HOH HOH . 
F 5 HOH B 58 5058 64 HOH HOH . 
F 5 HOH B 59 5059 65 HOH HOH . 
F 5 HOH B 60 5060 66 HOH HOH . 
F 5 HOH B 61 5061 67 HOH HOH . 
F 5 HOH B 62 5062 70 HOH HOH . 
F 5 HOH B 63 5063 71 HOH HOH . 
F 5 HOH B 64 5064 72 HOH HOH . 
F 5 HOH B 65 5065 75 HOH HOH . 
F 5 HOH B 66 5066 76 HOH HOH . 
F 5 HOH B 67 5067 77 HOH HOH . 
F 5 HOH B 68 5068 78 HOH HOH . 
F 5 HOH B 69 5069 80 HOH HOH . 
F 5 HOH B 70 5070 81 HOH HOH . 
F 5 HOH B 71 5071 82 HOH HOH . 
F 5 HOH B 72 5072 83 HOH HOH . 
F 5 HOH B 73 5073 85 HOH HOH . 
F 5 HOH B 74 5074 86 HOH HOH . 
F 5 HOH B 75 5075 87 HOH HOH . 
F 5 HOH B 76 5076 88 HOH HOH . 
F 5 HOH B 77 5077 89 HOH HOH . 
F 5 HOH B 78 5078 90 HOH HOH . 
F 5 HOH B 79 5079 91 HOH HOH . 
F 5 HOH B 80 5080 92 HOH HOH . 
F 5 HOH B 81 5081 93 HOH HOH . 
F 5 HOH B 82 5082 94 HOH HOH . 
F 5 HOH B 83 5083 95 HOH HOH . 
F 5 HOH B 84 5084 96 HOH HOH . 
F 5 HOH B 85 5085 97 HOH HOH . 
F 5 HOH B 86 5086 98 HOH HOH . 
F 5 HOH B 87 5087 99 HOH HOH . 
F 5 HOH B 88 5088 101 HOH HOH . 
F 5 HOH B 89 5089 102 HOH HOH . 
F 5 HOH B 90 5090 104 HOH HOH . 
F 5 HOH B 91 5091 106 HOH HOH . 
F 5 HOH B 92 5092 108 HOH HOH . 
F 5 HOH B 93 5093 109 HOH HOH . 
F 5 HOH B 94 5094 110 HOH HOH . 
F 5 HOH B 95 5095 111 HOH HOH . 
F 5 HOH B 96 5096 112 HOH HOH . 
F 5 HOH B 97 5097 113 HOH HOH . 
F 5 HOH B 98 5098 115 HOH HOH . 
F 5 HOH B 99 5099 116 HOH HOH . 
F 5 HOH B 100 5100 117 HOH HOH . 
F 5 HOH B 101 5101 118 HOH HOH . 
F 5 HOH B 102 5102 119 HOH HOH . 
F 5 HOH B 103 5103 120 HOH HOH . 
G 5 HOH H 1 49 49 HOH HOH . 
G 5 HOH H 2 73 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DKK . . . D 4 11.234 -11.841 24.024 1 20.6 ? C1 DKK 5000 B 1 
HETATM 2 O O5 DKK . . . D 4 13.047 -11.005 22.769 1 20 ? O5 DKK 5000 B 1 
HETATM 3 C C7 DKK . . . D 4 13.811 -11.475 20.545 1 21.14 ? C7 DKK 5000 B 1 
HETATM 4 C C9 DKK . . . D 4 16.145 -12.477 20.392 1 23.73 ? C9 DKK 5000 B 1 
HETATM 5 C C11 DKK . . . D 4 17.64 -12.309 20.736 1 24.05 ? C11 DKK 5000 B 1 
HETATM 6 C C12 DKK . . . D 4 18.196 -13.585 21.385 1 19.75 ? C12 DKK 5000 B 1 
HETATM 7 C C13 DKK . . . D 4 19.438 -14.092 20.914 1 27.88 ? C13 DKK 5000 B 1 
HETATM 8 C C14 DKK . . . D 4 19.994 -15.252 21.473 1 23 ? C14 DKK 5000 B 1 
HETATM 9 C C15 DKK . . . D 4 19.309 -15.916 22.506 1 28.17 ? C15 DKK 5000 B 1 
HETATM 10 C C16 DKK . . . D 4 18.054 -15.415 22.984 1 22.92 ? C16 DKK 5000 B 1 
HETATM 11 C C19 DKK . . . D 4 20.155 -13.338 19.789 1 25.03 ? C19 DKK 5000 B 1 
HETATM 12 C C22 DKK . . . D 4 18.071 -17.274 24.617 1 26.91 ? C22 DKK 5000 B 1 
HETATM 13 C C30 DKK . . . D 4 20.942 -13.918 26.168 1 22.57 ? C30 DKK 5000 B 1 
HETATM 14 C C31 DKK . . . D 4 19.824 -14.725 26.289 1 22.36 ? C31 DKK 5000 B 1 
HETATM 15 N N2 DKK . . . D 4 11.165 -10.7 24.556 1 19.54 ? N2 DKK 5000 B 1 
HETATM 16 N N3 DKK . . . D 4 10.421 -12.953 24.508 1 23.3 ? N3 DKK 5000 B 1 
HETATM 17 N N4 DKK . . . D 4 12.199 -12.108 22.976 1 19.71 ? N4 DKK 5000 B 1 
HETATM 18 C C6 DKK . . . D 4 13.077 -10.474 21.46 1 25.37 ? C6 DKK 5000 B 1 
HETATM 19 N N8 DKK . . . D 4 15.251 -11.394 20.794 1 21.33 ? N8 DKK 5000 B 1 
HETATM 20 O O10 DKK . . . D 4 15.696 -13.555 20.11 1 23.2 ? O10 DKK 5000 B 1 
HETATM 21 C C17 DKK . . . D 4 17.51 -14.24 22.42 1 18.96 ? C17 DKK 5000 B 1 
HETATM 22 F F18 DKK . . . D 4 16.316 -13.756 22.861 1 19.7 ? F18 DKK 5000 B 1 
HETATM 23 N N20 DKK . . . D 4 20.685 -12.782 18.958 1 22.33 ? N20 DKK 5000 B 1 
HETATM 24 N N21 DKK . . . D 4 17.367 -16.126 24.065 1 21.51 ? N21 DKK 5000 B 1 
HETATM 25 C C23 DKK . . . D 4 18.615 -16.955 26.029 1 27 ? C23 DKK 5000 B 1 
HETATM 26 F F24 DKK . . . D 4 17.726 -16.25 26.779 1 24.08 ? F24 DKK 5000 B 1 
HETATM 27 F F25 DKK . . . D 4 18.869 -18.135 26.655 1 36.12 ? F25 DKK 5000 B 1 
HETATM 28 C C26 DKK . . . D 4 19.88 -16.098 25.906 1 20.93 ? C26 DKK 5000 B 1 
HETATM 29 N N27 DKK . . . D 4 21.037 -16.625 25.379 1 23.18 ? N27 DKK 5000 B 1 
HETATM 30 C C28 DKK . . . D 4 22.164 -15.809 25.25 1 23.37 ? C28 DKK 5000 B 1 
HETATM 31 C C29 DKK . . . D 4 22.123 -14.443 25.639 1 18.52 ? C29 DKK 5000 B 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           1308 
_model_server_stats.encode_time_ms          44 
_model_server_stats.element_count           31 
#