data_3C2W # _model_server_result.job_id 4-DZWbuWta5kYhFUv4DSYQ _model_server_result.datetime_utc '2025-02-26 11:41:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":900}' # _entry.id 3C2W # _exptl.entry_id 3C2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C2W _cell.length_a 154.417 _cell.length_b 164.255 _cell.length_c 434.868 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression E,F,M,N,U,V 1 1 C,D,K,L,S,T 2 1 G,H,O,P,W,X 3 1 A,B,I,J,Q,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 12 A CYS 12 1_555 I CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.666 ? covale ? covale2 B SG CYS 12 B CYS 12 1_555 J CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale3 C SG CYS 12 C CYS 12 1_555 K CBC BLA . C BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale4 D SG CYS 12 D CYS 12 1_555 L CBC BLA . D BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale5 E SG CYS 12 E CYS 12 1_555 M CBC BLA . E BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? covale ? covale6 F SG CYS 12 F CYS 12 1_555 N CBC BLA . F BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale7 G SG CYS 12 G CYS 12 1_555 O CBC BLA . G BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale8 H SG CYS 12 H CYS 12 1_555 P CBC BLA . H BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 3C2W _atom_sites.fract_transf_matrix[1][1] 0.006476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 BLA A 1 900 900 BLA BLA . J 2 BLA B 1 900 900 BLA BLA . K 2 BLA C 1 900 900 BLA BLA . L 2 BLA D 1 900 900 BLA BLA . M 2 BLA E 1 900 900 BLA BLA . N 2 BLA F 1 900 900 BLA BLA . O 2 BLA G 1 900 900 BLA BLA . P 2 BLA H 1 900 900 BLA BLA . Q 3 HOH A 1 901 3 HOH HOH . Q 3 HOH A 2 902 4 HOH HOH . Q 3 HOH A 3 903 7 HOH HOH . Q 3 HOH A 4 904 18 HOH HOH . Q 3 HOH A 5 905 22 HOH HOH . Q 3 HOH A 6 906 30 HOH HOH . Q 3 HOH A 7 907 31 HOH HOH . R 3 HOH B 1 901 8 HOH HOH . R 3 HOH B 2 902 21 HOH HOH . S 3 HOH C 1 901 1 HOH HOH . S 3 HOH C 2 902 9 HOH HOH . S 3 HOH C 3 903 15 HOH HOH . S 3 HOH C 4 904 20 HOH HOH . S 3 HOH C 5 905 23 HOH HOH . S 3 HOH C 6 906 27 HOH HOH . T 3 HOH D 1 901 10 HOH HOH . T 3 HOH D 2 902 17 HOH HOH . T 3 HOH D 3 903 24 HOH HOH . U 3 HOH E 1 901 11 HOH HOH . V 3 HOH F 1 901 5 HOH HOH . V 3 HOH F 2 902 12 HOH HOH . W 3 HOH G 1 901 6 HOH HOH . W 3 HOH G 2 902 13 HOH HOH . W 3 HOH G 3 903 16 HOH HOH . W 3 HOH G 4 904 19 HOH HOH . W 3 HOH G 5 905 25 HOH HOH . W 3 HOH G 6 906 28 HOH HOH . W 3 HOH G 7 907 29 HOH HOH . X 3 HOH H 1 901 14 HOH HOH . X 3 HOH H 2 902 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . I 2 -18.183 24.132 106.377 1 88.71 ? CHA BLA 900 A 1 HETATM 2 N NA BLA . . . I 2 -17.513 25.967 104.879 1 95.58 ? NA BLA 900 A 1 HETATM 3 C C1A BLA . . . I 2 -18.226 24.9 105.216 1 92.15 ? C1A BLA 900 A 1 HETATM 4 C C2A BLA . . . I 2 -19.217 24.726 104.246 1 76.03 ? C2A BLA 900 A 1 HETATM 5 C C3A BLA . . . I 2 -18.947 25.669 103.263 1 74.63 ? C3A BLA 900 A 1 HETATM 6 C C4A BLA . . . I 2 -17.89 26.464 103.706 1 86.93 ? C4A BLA 900 A 1 HETATM 7 C CMA BLA . . . I 2 -19.736 25.81 101.952 1 82.13 ? CMA BLA 900 A 1 HETATM 8 C CAA BLA . . . I 2 -20.234 23.584 104.216 1 78.28 ? CAA BLA 900 A 1 HETATM 9 C CBA BLA . . . I 2 -21.599 23.936 104.81 1 86.38 ? CBA BLA 900 A 1 HETATM 10 C CGA BLA . . . I 2 -22.322 25.034 104.036 1 87.08 ? CGA BLA 900 A 1 HETATM 11 O O1A BLA . . . I 2 -22.692 26.038 104.677 1 89.98 ? O1A BLA 900 A 1 HETATM 12 O O2A BLA . . . I 2 -22.512 24.821 102.825 1 84.76 ? O2A BLA 900 A 1 HETATM 13 C CHB BLA . . . I 2 -17.177 27.672 103.082 1 90.06 ? CHB BLA 900 A 1 HETATM 14 N NB BLA . . . I 2 -17.376 29.294 101.18 1 104.32 ? NB BLA 900 A 1 HETATM 15 C C1B BLA . . . I 2 -17.972 28.619 102.173 1 89.03 ? C1B BLA 900 A 1 HETATM 16 C C2B BLA . . . I 2 -19.326 28.974 102.186 1 76.76 ? C2B BLA 900 A 1 HETATM 17 C C3B BLA . . . I 2 -19.509 29.865 101.14 1 94.51 ? C3B BLA 900 A 1 HETATM 18 C C4B BLA . . . I 2 -18.273 30.051 100.545 1 107.52 ? C4B BLA 900 A 1 HETATM 19 C CMB BLA . . . I 2 -20.43 28.493 103.117 1 77.66 ? CMB BLA 900 A 1 HETATM 20 O OB BLA . . . I 2 -18.008 30.777 99.583 1 115.7 ? OB BLA 900 A 1 HETATM 21 C CAB BLA . . . I 2 -20.71 30.464 100.803 1 91.12 ? CAB BLA 900 A 1 HETATM 22 C CBB BLA . . . I 2 -20.762 31.352 99.741 1 78.39 ? CBB BLA 900 A 1 HETATM 23 N NC BLA . . . I 2 -14.453 27.703 107.016 1 82.71 ? NC BLA 900 A 1 HETATM 24 C C1C BLA . . . I 2 -13.724 28.686 106.477 1 86.43 ? C1C BLA 900 A 1 HETATM 25 C C2C BLA . . . I 2 -12.45 28.659 107.026 1 78.2 ? C2C BLA 900 A 1 HETATM 26 C C3C BLA . . . I 2 -12.418 27.613 107.929 1 75 ? C3C BLA 900 A 1 HETATM 27 C C4C BLA . . . I 2 -13.691 27.043 107.897 1 64.21 ? C4C BLA 900 A 1 HETATM 28 C CMC BLA . . . I 2 -11.288 29.6 106.705 1 73.77 ? CMC BLA 900 A 1 HETATM 29 O OC BLA . . . I 2 -14.117 29.491 105.63 1 76.32 ? OC BLA 900 A 1 HETATM 30 C CAC BLA . . . I 2 -11.254 27.153 108.82 1 104.67 ? CAC BLA 900 A 1 HETATM 31 C CBC BLA . . . I 2 -9.92 27.039 108.077 1 119.25 ? CBC BLA 900 A 1 HETATM 32 C CHD BLA . . . I 2 -14.099 25.853 108.765 1 60.88 ? CHD BLA 900 A 1 HETATM 33 N ND BLA . . . I 2 -16.152 25.249 107.273 1 83.55 ? ND BLA 900 A 1 HETATM 34 C C1D BLA . . . I 2 -15.372 25.104 108.344 1 76.24 ? C1D BLA 900 A 1 HETATM 35 C C2D BLA . . . I 2 -15.925 24.088 109.091 1 75.46 ? C2D BLA 900 A 1 HETATM 36 C C3D BLA . . . I 2 -17.046 23.614 108.451 1 82.6 ? C3D BLA 900 A 1 HETATM 37 C C4D BLA . . . I 2 -17.16 24.378 107.297 1 91.18 ? C4D BLA 900 A 1 HETATM 38 C CMD BLA . . . I 2 -15.385 23.561 110.425 1 80.39 ? CMD BLA 900 A 1 HETATM 39 C CAD BLA . . . I 2 -17.936 22.48 108.971 1 68.45 ? CAD BLA 900 A 1 HETATM 40 C CBD BLA . . . I 2 -19.106 22.997 109.809 1 83.54 ? CBD BLA 900 A 1 HETATM 41 C CGD BLA . . . I 2 -19.93 21.816 110.315 1 108.58 ? CGD BLA 900 A 1 HETATM 42 O O1D BLA . . . I 2 -19.406 21.113 111.212 1 113.25 ? O1D BLA 900 A 1 HETATM 43 O O2D BLA . . . I 2 -21.052 21.637 109.787 1 114.47 ? O2D BLA 900 A 1 # _model_server_stats.io_time_ms 394 _model_server_stats.parse_time_ms 103 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #