data_3C2W # _model_server_result.job_id rIyAaBRwtUktOAGvhB4nMQ _model_server_result.datetime_utc '2025-02-26 13:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":900}' # _entry.id 3C2W # _exptl.entry_id 3C2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C2W _cell.length_a 154.417 _cell.length_b 164.255 _cell.length_c 434.868 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression E,F,M,N,U,V 1 1 C,D,K,L,S,T 2 1 G,H,O,P,W,X 3 1 A,B,I,J,Q,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 12 A CYS 12 1_555 I CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.666 ? covale ? covale2 B SG CYS 12 B CYS 12 1_555 J CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale3 C SG CYS 12 C CYS 12 1_555 K CBC BLA . C BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale4 D SG CYS 12 D CYS 12 1_555 L CBC BLA . D BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale5 E SG CYS 12 E CYS 12 1_555 M CBC BLA . E BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? covale ? covale6 F SG CYS 12 F CYS 12 1_555 N CBC BLA . F BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale7 G SG CYS 12 G CYS 12 1_555 O CBC BLA . G BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale8 H SG CYS 12 H CYS 12 1_555 P CBC BLA . H BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 3C2W _atom_sites.fract_transf_matrix[1][1] 0.006476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 BLA A 1 900 900 BLA BLA . J 2 BLA B 1 900 900 BLA BLA . K 2 BLA C 1 900 900 BLA BLA . L 2 BLA D 1 900 900 BLA BLA . M 2 BLA E 1 900 900 BLA BLA . N 2 BLA F 1 900 900 BLA BLA . O 2 BLA G 1 900 900 BLA BLA . P 2 BLA H 1 900 900 BLA BLA . Q 3 HOH A 1 901 3 HOH HOH . Q 3 HOH A 2 902 4 HOH HOH . Q 3 HOH A 3 903 7 HOH HOH . Q 3 HOH A 4 904 18 HOH HOH . Q 3 HOH A 5 905 22 HOH HOH . Q 3 HOH A 6 906 30 HOH HOH . Q 3 HOH A 7 907 31 HOH HOH . R 3 HOH B 1 901 8 HOH HOH . R 3 HOH B 2 902 21 HOH HOH . S 3 HOH C 1 901 1 HOH HOH . S 3 HOH C 2 902 9 HOH HOH . S 3 HOH C 3 903 15 HOH HOH . S 3 HOH C 4 904 20 HOH HOH . S 3 HOH C 5 905 23 HOH HOH . S 3 HOH C 6 906 27 HOH HOH . T 3 HOH D 1 901 10 HOH HOH . T 3 HOH D 2 902 17 HOH HOH . T 3 HOH D 3 903 24 HOH HOH . U 3 HOH E 1 901 11 HOH HOH . V 3 HOH F 1 901 5 HOH HOH . V 3 HOH F 2 902 12 HOH HOH . W 3 HOH G 1 901 6 HOH HOH . W 3 HOH G 2 902 13 HOH HOH . W 3 HOH G 3 903 16 HOH HOH . W 3 HOH G 4 904 19 HOH HOH . W 3 HOH G 5 905 25 HOH HOH . W 3 HOH G 6 906 28 HOH HOH . W 3 HOH G 7 907 29 HOH HOH . X 3 HOH H 1 901 14 HOH HOH . X 3 HOH H 2 902 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . J 2 -47.873 -14.022 88.074 1 128.44 ? CHA BLA 900 B 1 HETATM 2 N NA BLA . . . J 2 -46.797 -16.021 87.156 1 105.49 ? NA BLA 900 B 1 HETATM 3 C C1A BLA . . . J 2 -46.814 -14.859 87.768 1 116.38 ? C1A BLA 900 B 1 HETATM 4 C C2A BLA . . . J 2 -45.541 -14.639 88.308 1 113.22 ? C2A BLA 900 B 1 HETATM 5 C C3A BLA . . . J 2 -44.757 -15.694 87.834 1 112.97 ? C3A BLA 900 B 1 HETATM 6 C C4A BLA . . . J 2 -45.581 -16.576 87.133 1 108.29 ? C4A BLA 900 B 1 HETATM 7 C CMA BLA . . . J 2 -43.259 -15.817 88.109 1 127.28 ? CMA BLA 900 B 1 HETATM 8 C CAA BLA . . . J 2 -45.084 -13.4 89.076 1 119.51 ? CAA BLA 900 B 1 HETATM 9 C CBA BLA . . . J 2 -45.284 -13.414 90.6 1 128.3 ? CBA BLA 900 B 1 HETATM 10 C CGA BLA . . . J 2 -44.493 -14.517 91.3 1 121.61 ? CGA BLA 900 B 1 HETATM 11 O O1A BLA . . . J 2 -45.032 -15.053 92.293 1 107.37 ? O1A BLA 900 B 1 HETATM 12 O O2A BLA . . . J 2 -43.357 -14.776 90.845 1 115.55 ? O2A BLA 900 B 1 HETATM 13 C CHB BLA . . . J 2 -45.31 -17.908 86.417 1 119.67 ? CHB BLA 900 B 1 HETATM 14 N NB BLA . . . J 2 -43.372 -19.387 85.812 1 130.4 ? NB BLA 900 B 1 HETATM 15 C C1B BLA . . . J 2 -44.052 -18.725 86.758 1 125.6 ? C1B BLA 900 B 1 HETATM 16 C C2B BLA . . . J 2 -43.421 -18.984 87.977 1 115.96 ? C2B BLA 900 B 1 HETATM 17 C C3B BLA . . . J 2 -42.337 -19.801 87.715 1 114.09 ? C3B BLA 900 B 1 HETATM 18 C C4B BLA . . . J 2 -42.345 -20.032 86.355 1 127.66 ? C4B BLA 900 B 1 HETATM 19 C CMB BLA . . . J 2 -43.813 -18.469 89.361 1 112.41 ? CMB BLA 900 B 1 HETATM 20 O OB BLA . . . J 2 -41.534 -20.723 85.746 1 135.93 ? OB BLA 900 B 1 HETATM 21 C CAB BLA . . . J 2 -41.411 -20.308 88.622 1 109.53 ? CAB BLA 900 B 1 HETATM 22 C CBB BLA . . . J 2 -40.376 -21.122 88.175 1 108.09 ? CBB BLA 900 B 1 HETATM 23 N NC BLA . . . J 2 -49.806 -17.534 85.054 1 137.92 ? NC BLA 900 B 1 HETATM 24 C C1C BLA . . . J 2 -49.52 -18.529 84.217 1 132.09 ? C1C BLA 900 B 1 HETATM 25 C C2C BLA . . . J 2 -50.583 -18.716 83.351 1 129.02 ? C2C BLA 900 B 1 HETATM 26 C C3C BLA . . . J 2 -51.546 -17.771 83.669 1 135.27 ? C3C BLA 900 B 1 HETATM 27 C C4C BLA . . . J 2 -51.015 -17.052 84.742 1 131.57 ? C4C BLA 900 B 1 HETATM 28 C CMC BLA . . . J 2 -50.658 -19.763 82.233 1 125.19 ? CMC BLA 900 B 1 HETATM 29 O OC BLA . . . J 2 -48.488 -19.196 84.228 1 132.42 ? OC BLA 900 B 1 HETATM 30 C CAC BLA . . . J 2 -52.92 -17.542 83.018 1 145.16 ? CAC BLA 900 B 1 HETATM 31 C CBC BLA . . . J 2 -52.895 -17.671 81.49 1 144.56 ? CBC BLA 900 B 1 HETATM 32 C CHD BLA . . . J 2 -51.732 -15.907 85.446 1 126.04 ? CHD BLA 900 B 1 HETATM 33 N ND BLA . . . J 2 -49.526 -15.223 86.665 1 124.25 ? ND BLA 900 B 1 HETATM 34 C C1D BLA . . . J 2 -50.831 -15.081 86.373 1 124.07 ? C1D BLA 900 B 1 HETATM 35 C C2D BLA . . . J 2 -51.274 -14.017 87.113 1 122.32 ? C2D BLA 900 B 1 HETATM 36 C C3D BLA . . . J 2 -50.218 -13.495 87.827 1 121.4 ? C3D BLA 900 B 1 HETATM 37 C C4D BLA . . . J 2 -49.134 -14.264 87.501 1 128.01 ? C4D BLA 900 B 1 HETATM 38 C CMD BLA . . . J 2 -52.721 -13.491 87.128 1 121.07 ? CMD BLA 900 B 1 HETATM 39 C CAD BLA . . . J 2 -50.354 -12.291 88.79 1 110.24 ? CAD BLA 900 B 1 HETATM 40 C CBD BLA . . . J 2 -50.883 -12.806 90.132 1 107.89 ? CBD BLA 900 B 1 HETATM 41 C CGD BLA . . . J 2 -51.095 -11.702 91.16 1 119.73 ? CGD BLA 900 B 1 HETATM 42 O O1D BLA . . . J 2 -52.186 -11.1 91.111 1 129.74 ? O1D BLA 900 B 1 HETATM 43 O O2D BLA . . . J 2 -50.182 -11.489 91.991 1 112.14 ? O2D BLA 900 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #