data_3C2W # _model_server_result.job_id QG95UPS1zp0e-8oEKMggjg _model_server_result.datetime_utc '2025-02-26 12:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":900}' # _entry.id 3C2W # _exptl.entry_id 3C2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C2W _cell.length_a 154.417 _cell.length_b 164.255 _cell.length_c 434.868 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression E,F,M,N,U,V 1 1 C,D,K,L,S,T 2 1 G,H,O,P,W,X 3 1 A,B,I,J,Q,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 12 A CYS 12 1_555 I CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.666 ? covale ? covale2 B SG CYS 12 B CYS 12 1_555 J CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale3 C SG CYS 12 C CYS 12 1_555 K CBC BLA . C BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale4 D SG CYS 12 D CYS 12 1_555 L CBC BLA . D BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale5 E SG CYS 12 E CYS 12 1_555 M CBC BLA . E BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? covale ? covale6 F SG CYS 12 F CYS 12 1_555 N CBC BLA . F BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale7 G SG CYS 12 G CYS 12 1_555 O CBC BLA . G BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale8 H SG CYS 12 H CYS 12 1_555 P CBC BLA . H BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 3C2W _atom_sites.fract_transf_matrix[1][1] 0.006476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 BLA A 1 900 900 BLA BLA . J 2 BLA B 1 900 900 BLA BLA . K 2 BLA C 1 900 900 BLA BLA . L 2 BLA D 1 900 900 BLA BLA . M 2 BLA E 1 900 900 BLA BLA . N 2 BLA F 1 900 900 BLA BLA . O 2 BLA G 1 900 900 BLA BLA . P 2 BLA H 1 900 900 BLA BLA . Q 3 HOH A 1 901 3 HOH HOH . Q 3 HOH A 2 902 4 HOH HOH . Q 3 HOH A 3 903 7 HOH HOH . Q 3 HOH A 4 904 18 HOH HOH . Q 3 HOH A 5 905 22 HOH HOH . Q 3 HOH A 6 906 30 HOH HOH . Q 3 HOH A 7 907 31 HOH HOH . R 3 HOH B 1 901 8 HOH HOH . R 3 HOH B 2 902 21 HOH HOH . S 3 HOH C 1 901 1 HOH HOH . S 3 HOH C 2 902 9 HOH HOH . S 3 HOH C 3 903 15 HOH HOH . S 3 HOH C 4 904 20 HOH HOH . S 3 HOH C 5 905 23 HOH HOH . S 3 HOH C 6 906 27 HOH HOH . T 3 HOH D 1 901 10 HOH HOH . T 3 HOH D 2 902 17 HOH HOH . T 3 HOH D 3 903 24 HOH HOH . U 3 HOH E 1 901 11 HOH HOH . V 3 HOH F 1 901 5 HOH HOH . V 3 HOH F 2 902 12 HOH HOH . W 3 HOH G 1 901 6 HOH HOH . W 3 HOH G 2 902 13 HOH HOH . W 3 HOH G 3 903 16 HOH HOH . W 3 HOH G 4 904 19 HOH HOH . W 3 HOH G 5 905 25 HOH HOH . W 3 HOH G 6 906 28 HOH HOH . W 3 HOH G 7 907 29 HOH HOH . X 3 HOH H 1 901 14 HOH HOH . X 3 HOH H 2 902 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . L 2 -78.245 34.607 73.798 1 128.37 ? CHA BLA 900 D 1 HETATM 2 N NA BLA . . . L 2 -77.794 32.273 73.168 1 121.41 ? NA BLA 900 D 1 HETATM 3 C C1A BLA . . . L 2 -77.46 33.516 73.469 1 122.56 ? C1A BLA 900 D 1 HETATM 4 C C2A BLA . . . L 2 -76.077 33.582 73.591 1 115.26 ? C2A BLA 900 D 1 HETATM 5 C C3A BLA . . . L 2 -75.619 32.327 73.202 1 113.61 ? C3A BLA 900 D 1 HETATM 6 C C4A BLA . . . L 2 -76.723 31.496 72.98 1 117.03 ? C4A BLA 900 D 1 HETATM 7 C CMA BLA . . . L 2 -74.135 31.959 73.109 1 119.93 ? CMA BLA 900 D 1 HETATM 8 C CAA BLA . . . L 2 -75.258 34.851 73.877 1 121.07 ? CAA BLA 900 D 1 HETATM 9 C CBA BLA . . . L 2 -74.924 35.171 75.346 1 125.78 ? CBA BLA 900 D 1 HETATM 10 C CGA BLA . . . L 2 -74.036 34.152 76.07 1 132.03 ? CGA BLA 900 D 1 HETATM 11 O O1A BLA . . . L 2 -74.139 34.106 77.317 1 135.49 ? O1A BLA 900 D 1 HETATM 12 O O2A BLA . . . L 2 -73.227 33.487 75.385 1 130.79 ? O2A BLA 900 D 1 HETATM 13 C CHB BLA . . . L 2 -76.832 30.002 72.573 1 140.55 ? CHB BLA 900 D 1 HETATM 14 N NB BLA . . . L 2 -75.242 28.092 72.042 1 140.06 ? NB BLA 900 D 1 HETATM 15 C C1B BLA . . . L 2 -75.641 29.072 72.87 1 138.09 ? C1B BLA 900 D 1 HETATM 16 C C2B BLA . . . L 2 -74.812 29.032 73.995 1 117.49 ? C2B BLA 900 D 1 HETATM 17 C C3B BLA . . . L 2 -73.895 28.021 73.799 1 120.11 ? C3B BLA 900 D 1 HETATM 18 C C4B BLA . . . L 2 -74.196 27.452 72.574 1 140.18 ? C4B BLA 900 D 1 HETATM 19 C CMB BLA . . . L 2 -74.853 29.933 75.232 1 104.43 ? CMB BLA 900 D 1 HETATM 20 O OB BLA . . . L 2 -73.6 26.51 72.048 1 148.57 ? OB BLA 900 D 1 HETATM 21 C CAB BLA . . . L 2 -72.878 27.65 74.668 1 110.97 ? CAB BLA 900 D 1 HETATM 22 C CBB BLA . . . L 2 -72.022 26.604 74.34 1 99.4 ? CBB BLA 900 D 1 HETATM 23 N NC BLA . . . L 2 -81.281 31 72.39 1 139.13 ? NC BLA 900 D 1 HETATM 24 C C1C BLA . . . L 2 -81.296 29.824 71.768 1 130.08 ? C1C BLA 900 D 1 HETATM 25 C C2C BLA . . . L 2 -82.545 29.626 71.204 1 108.99 ? C2C BLA 900 D 1 HETATM 26 C C3C BLA . . . L 2 -83.309 30.743 71.495 1 110.28 ? C3C BLA 900 D 1 HETATM 27 C C4C BLA . . . L 2 -82.475 31.58 72.239 1 129.46 ? C4C BLA 900 D 1 HETATM 28 C CMC BLA . . . L 2 -83.004 28.409 70.399 1 107.86 ? CMC BLA 900 D 1 HETATM 29 O OC BLA . . . L 2 -80.351 29.038 71.717 1 136.67 ? OC BLA 900 D 1 HETATM 30 C CAC BLA . . . L 2 -84.764 31.01 71.1 1 114.49 ? CAC BLA 900 D 1 HETATM 31 C CBC BLA . . . L 2 -84.957 30.926 69.586 1 131.39 ? CBC BLA 900 D 1 HETATM 32 C CHD BLA . . . L 2 -82.866 32.938 72.809 1 131.42 ? CHD BLA 900 D 1 HETATM 33 N ND BLA . . . L 2 -80.362 33.464 73.235 1 129.52 ? ND BLA 900 D 1 HETATM 34 C C1D BLA . . . L 2 -81.662 33.787 73.228 1 131.69 ? C1D BLA 900 D 1 HETATM 35 C C2D BLA . . . L 2 -81.74 35.08 73.675 1 132.05 ? C2D BLA 900 D 1 HETATM 36 C C3D BLA . . . L 2 -80.471 35.531 73.951 1 125.16 ? C3D BLA 900 D 1 HETATM 37 C C4D BLA . . . L 2 -79.63 34.49 73.656 1 129.06 ? C4D BLA 900 D 1 HETATM 38 C CMD BLA . . . L 2 -83.041 35.88 73.852 1 136.11 ? CMD BLA 900 D 1 HETATM 39 C CAD BLA . . . L 2 -80.164 36.929 74.484 1 115.87 ? CAD BLA 900 D 1 HETATM 40 C CBD BLA . . . L 2 -80.764 37.037 75.888 1 115.11 ? CBD BLA 900 D 1 HETATM 41 C CGD BLA . . . L 2 -80.5 38.408 76.474 1 123.25 ? CGD BLA 900 D 1 HETATM 42 O O1D BLA . . . L 2 -81.424 39.242 76.378 1 123.01 ? O1D BLA 900 D 1 HETATM 43 O O2D BLA . . . L 2 -79.374 38.593 76.99 1 117.97 ? O2D BLA 900 D 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #