data_3C3G # _model_server_result.job_id 0lnR6zxMzamHQdutBOndQQ _model_server_result.datetime_utc '2024-10-20 07:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":34}' # _entry.id 3C3G # _exptl.entry_id 3C3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C3G _cell.length_a 38.414 _cell.length_b 38.414 _cell.length_c 46.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 38.414 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 19.207 -19.207 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 19.207 19.207 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HMR 1 A HMR 1 1_555 A N MET 2 A MET 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C LYS 3 A LYS 3 1_555 A N B3Q 4 A B3Q 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale3 A C B3Q 4 A B3Q 4 1_555 A N ILE 5 A ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C GLU 6 A GLU 6 1_555 A N B3D 7 A B3D 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C B3D 7 A B3D 7 1_555 A N LYS 8 A LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C LEU 9 A LEU 9 1_555 A N B3E 10 A B3E 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C B3E 10 A B3E 10 1_555 A N GLU 11 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C ILE 12 A ILE 12 1_555 A N B3L 13 A B3L 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale9 A C B3L 13 A B3L 13 1_555 A N SER 14 A SER 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C LYS 15 A LYS 15 1_555 A N B3L 16 A B3L 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale11 A C B3L 16 A B3L 16 1_555 A N TYR 17 A TYR 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 A C HIS 18 A HIS 18 1_555 A N BIL 19 A BIL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 A C BIL 19 A BIL 19 1_555 A N GLU 20 A GLU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale14 A C ASN 21 A ASN 21 1_555 A N B3E 22 A B3E 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale15 A C B3E 22 A B3E 22 1_555 A N LEU 23 A LEU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale16 A C ALA 24 A ALA 24 1_555 A N HMR 25 A HMR 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale17 A C HMR 25 A HMR 25 1_555 A N ILE 26 A ILE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale18 A C LYS 27 A LYS 27 1_555 A N B3K 28 A B3K 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C B3K 28 A B3K 28 1_555 A N LEU 29 A LEU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 A C LEU 30 A LEU 30 1_555 A N BAL 31 A BAL 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 3C3G _atom_sites.fract_transf_matrix[1][1] 0.026032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 34 1 GOL GOL . C 3 HOH A 1 35 1 HOH HOH . C 3 HOH A 2 36 2 HOH HOH . C 3 HOH A 3 37 3 HOH HOH . C 3 HOH A 4 38 4 HOH HOH . C 3 HOH A 5 39 5 HOH HOH . C 3 HOH A 6 40 6 HOH HOH . C 3 HOH A 7 41 7 HOH HOH . C 3 HOH A 8 42 8 HOH HOH . C 3 HOH A 9 43 9 HOH HOH . C 3 HOH A 10 44 10 HOH HOH . C 3 HOH A 11 45 11 HOH HOH . C 3 HOH A 12 46 12 HOH HOH . C 3 HOH A 13 47 13 HOH HOH . C 3 HOH A 14 48 14 HOH HOH . C 3 HOH A 15 49 15 HOH HOH . C 3 HOH A 16 50 16 HOH HOH . C 3 HOH A 17 51 17 HOH HOH . C 3 HOH A 18 52 18 HOH HOH . C 3 HOH A 19 53 19 HOH HOH . C 3 HOH A 20 54 20 HOH HOH . C 3 HOH A 21 55 21 HOH HOH . C 3 HOH A 22 56 22 HOH HOH . C 3 HOH A 23 57 23 HOH HOH . C 3 HOH A 24 58 24 HOH HOH . C 3 HOH A 25 59 25 HOH HOH . C 3 HOH A 26 60 26 HOH HOH . C 3 HOH A 27 61 27 HOH HOH . C 3 HOH A 28 62 28 HOH HOH . C 3 HOH A 29 63 29 HOH HOH . C 3 HOH A 30 64 30 HOH HOH . C 3 HOH A 31 65 31 HOH HOH . C 3 HOH A 32 66 32 HOH HOH . C 3 HOH A 33 67 33 HOH HOH . C 3 HOH A 34 68 34 HOH HOH . C 3 HOH A 35 69 35 HOH HOH . C 3 HOH A 36 70 36 HOH HOH . C 3 HOH A 37 71 37 HOH HOH . C 3 HOH A 38 72 38 HOH HOH . C 3 HOH A 39 73 39 HOH HOH . C 3 HOH A 40 74 40 HOH HOH . C 3 HOH A 41 75 41 HOH HOH . C 3 HOH A 42 76 42 HOH HOH . C 3 HOH A 43 77 43 HOH HOH . C 3 HOH A 44 78 44 HOH HOH . C 3 HOH A 45 79 45 HOH HOH . C 3 HOH A 46 80 46 HOH HOH . C 3 HOH A 47 81 48 HOH HOH . C 3 HOH A 48 82 49 HOH HOH . C 3 HOH A 49 83 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 17.06 9.616 -0.996 1 38.8 ? C1 GOL 34 A 1 HETATM 2 O O1 GOL . . . B 2 17.382 9.328 -2.338 1 38.55 ? O1 GOL 34 A 1 HETATM 3 C C2 GOL . . . B 2 16.276 10.915 -0.795 1 38.3 ? C2 GOL 34 A 1 HETATM 4 O O2 GOL . . . B 2 16.545 11.843 -1.825 1 40.71 ? O2 GOL 34 A 1 HETATM 5 C C3 GOL . . . B 2 16.49 11.565 0.584 1 37.85 ? C3 GOL 34 A 1 HETATM 6 O O3 GOL . . . B 2 15.581 11.141 1.592 1 35.32 ? O3 GOL 34 A 1 HETATM 7 H H11 GOL . . . B 2 16.487 8.785 -0.588 1 38.62 ? H11 GOL 34 A 1 HETATM 8 H H12 GOL . . . B 2 17.989 9.686 -0.447 1 38.62 ? H12 GOL 34 A 1 HETATM 9 H HO1 GOL . . . B 2 17.938 8.528 -2.379 0 38.76 ? HO1 GOL 34 A 1 HETATM 10 H H2 GOL . . . B 2 15.229 10.667 -0.854 1 38.77 ? H2 GOL 34 A 1 HETATM 11 H HO2 GOL . . . B 2 15.924 12.606 -1.719 0 41 ? HO2 GOL 34 A 1 HETATM 12 H H31 GOL . . . B 2 17.502 11.372 0.923 1 37.36 ? H31 GOL 34 A 1 HETATM 13 H H32 GOL . . . B 2 16.405 12.645 0.471 1 37.36 ? H32 GOL 34 A 1 HETATM 14 H HO3 GOL . . . B 2 15.319 10.047 1.36 1 36.1 ? HO3 GOL 34 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #