data_3C4V # _model_server_result.job_id 3UwshUyPvRiMDq0ZGzPiYw _model_server_result.datetime_utc '2024-11-13 08:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 3C4V # _exptl.entry_id 3C4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-MYO-INOSITOL-1-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C4V _cell.length_a 223.94 _cell.length_b 223.94 _cell.length_c 125.005 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA hexadecameric 16 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1,2 B,E,F,G,I 2 1,3 A,B,C,D,E,F,G,H,I 3 1,4,5,6,3,7,2,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 223.94 0 0 4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 223.94 223.94 0 5 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 223.94 0 0 6 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 223.94 0 7 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 223.94 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 223.94 223.94 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 306 A ALA 306 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OG1 THR 330 A THR 330 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 C MG MG . A MG 602 1_555 H O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 B O ALA 306 B ALA 306 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 E MG MG . B MG 602 1_555 I O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'C6 H11 O9 P -2' _chem_comp.formula_weight 258.12 _chem_comp.id LIP _chem_comp.mon_nstd_flag . _chem_comp.name L-MYO-INOSITOL-1-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LIP sing 194 n n C1 C6 LIP sing 195 n n C1 O1 LIP sing 196 n n C1 H1 LIP sing 197 n n C2 C3 LIP sing 198 n n C2 O2 LIP sing 199 n n C2 H2 LIP sing 200 n n C3 C4 LIP sing 201 n n C3 O3 LIP sing 202 n n C3 H3 LIP sing 203 n n C4 C5 LIP sing 204 n n C4 O4 LIP sing 205 n n C4 H4 LIP sing 206 n n C5 C6 LIP sing 207 n n C5 O5 LIP sing 208 n n C5 H5 LIP sing 209 n n C6 O6 LIP sing 210 n n C6 H6 LIP sing 211 n n P1 O1 LIP sing 212 n n P1 O7 LIP doub 213 n n P1 O8 LIP sing 214 n n P1 O9 LIP sing 215 n n O2 HO2 LIP sing 216 n n O3 HO3 LIP sing 217 n n O4 HO4 LIP sing 218 n n O5 HO5 LIP sing 219 n n O6 HO6 LIP sing 220 n n # _atom_sites.entry_id 3C4V _atom_sites.fract_transf_matrix[1][1] 0.004465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 602 602 MG MG . D 3 UDP A 1 600 600 UDP UDP . E 2 MG B 1 602 602 MG MG . F 3 UDP B 1 600 600 UDP UDP . G 4 LIP B 1 601 601 LIP 1IP . H 5 HOH A 1 603 3 HOH HOH . H 5 HOH A 2 604 4 HOH HOH . H 5 HOH A 3 605 9 HOH HOH . H 5 HOH A 4 606 10 HOH HOH . H 5 HOH A 5 607 11 HOH HOH . H 5 HOH A 6 608 12 HOH HOH . H 5 HOH A 7 609 13 HOH HOH . H 5 HOH A 8 610 14 HOH HOH . H 5 HOH A 9 611 15 HOH HOH . H 5 HOH A 10 612 16 HOH HOH . H 5 HOH A 11 613 28 HOH HOH . H 5 HOH A 12 614 29 HOH HOH . H 5 HOH A 13 615 32 HOH HOH . H 5 HOH A 14 616 33 HOH HOH . H 5 HOH A 15 617 34 HOH HOH . H 5 HOH A 16 618 35 HOH HOH . H 5 HOH A 17 619 36 HOH HOH . H 5 HOH A 18 620 37 HOH HOH . H 5 HOH A 19 621 38 HOH HOH . H 5 HOH A 20 622 39 HOH HOH . H 5 HOH A 21 623 40 HOH HOH . H 5 HOH A 22 624 41 HOH HOH . H 5 HOH A 23 625 42 HOH HOH . H 5 HOH A 24 626 43 HOH HOH . H 5 HOH A 25 627 44 HOH HOH . H 5 HOH A 26 628 45 HOH HOH . H 5 HOH A 27 629 46 HOH HOH . H 5 HOH A 28 630 47 HOH HOH . H 5 HOH A 29 631 48 HOH HOH . H 5 HOH A 30 632 49 HOH HOH . H 5 HOH A 31 633 50 HOH HOH . H 5 HOH A 32 634 51 HOH HOH . H 5 HOH A 33 635 52 HOH HOH . H 5 HOH A 34 636 53 HOH HOH . H 5 HOH A 35 637 54 HOH HOH . H 5 HOH A 36 638 55 HOH HOH . H 5 HOH A 37 639 56 HOH HOH . H 5 HOH A 38 640 72 HOH HOH . I 5 HOH B 1 603 5 HOH HOH . I 5 HOH B 2 604 6 HOH HOH . I 5 HOH B 3 605 7 HOH HOH . I 5 HOH B 4 606 8 HOH HOH . I 5 HOH B 5 607 18 HOH HOH . I 5 HOH B 6 608 19 HOH HOH . I 5 HOH B 7 609 20 HOH HOH . I 5 HOH B 8 610 21 HOH HOH . I 5 HOH B 9 611 22 HOH HOH . I 5 HOH B 10 612 23 HOH HOH . I 5 HOH B 11 613 24 HOH HOH . I 5 HOH B 12 614 25 HOH HOH . I 5 HOH B 13 615 26 HOH HOH . I 5 HOH B 14 616 27 HOH HOH . I 5 HOH B 15 617 30 HOH HOH . I 5 HOH B 16 618 31 HOH HOH . I 5 HOH B 17 619 57 HOH HOH . I 5 HOH B 18 620 58 HOH HOH . I 5 HOH B 19 621 59 HOH HOH . I 5 HOH B 20 622 60 HOH HOH . I 5 HOH B 21 623 61 HOH HOH . I 5 HOH B 22 624 62 HOH HOH . I 5 HOH B 23 625 63 HOH HOH . I 5 HOH B 24 626 64 HOH HOH . I 5 HOH B 25 627 65 HOH HOH . I 5 HOH B 26 628 66 HOH HOH . I 5 HOH B 27 629 67 HOH HOH . I 5 HOH B 28 630 68 HOH HOH . I 5 HOH B 29 631 69 HOH HOH . I 5 HOH B 30 632 70 HOH HOH . I 5 HOH B 31 633 71 HOH HOH . I 5 HOH B 32 634 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LIP . . . G 4 99.541 43.252 -11.277 1 84.4 ? C1 LIP 601 B 1 HETATM 2 C C2 LIP . . . G 4 98.811 42.544 -12.459 1 84.77 ? C2 LIP 601 B 1 HETATM 3 C C3 LIP . . . G 4 97.354 42.147 -12.079 1 85.13 ? C3 LIP 601 B 1 HETATM 4 C C4 LIP . . . G 4 97.379 41.179 -10.871 1 85.26 ? C4 LIP 601 B 1 HETATM 5 C C5 LIP . . . G 4 98.071 41.848 -9.665 1 85.36 ? C5 LIP 601 B 1 HETATM 6 C C6 LIP . . . G 4 99.476 42.408 -9.976 1 84.63 ? C6 LIP 601 B 1 HETATM 7 P P1 LIP . . . G 4 101.95 44.566 -10.978 1 82.17 ? P1 LIP 601 B 1 HETATM 8 O O1 LIP . . . G 4 100.919 43.488 -11.654 1 83.94 ? O1 LIP 601 B 1 HETATM 9 O O2 LIP . . . G 4 99.566 41.38 -12.882 1 83.75 ? O2 LIP 601 B 1 HETATM 10 O O3 LIP . . . G 4 96.609 41.599 -13.195 1 84.33 ? O3 LIP 601 B 1 HETATM 11 O O4 LIP . . . G 4 96.06 40.755 -10.497 1 84.29 ? O4 LIP 601 B 1 HETATM 12 O O5 LIP . . . G 4 98.169 40.905 -8.597 1 85.71 ? O5 LIP 601 B 1 HETATM 13 O O6 LIP . . . G 4 99.874 43.191 -8.855 1 84.57 ? O6 LIP 601 B 1 HETATM 14 O O7 LIP . . . G 4 103.22 44.799 -11.984 1 80.23 ? O7 LIP 601 B 1 HETATM 15 O O8 LIP . . . G 4 102.451 44.067 -9.673 1 82.43 ? O8 LIP 601 B 1 HETATM 16 O O9 LIP . . . G 4 101.141 45.993 -10.906 1 81.16 ? O9 LIP 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #