data_3C4X # _model_server_result.job_id Tzg8tPUHRLO0SN2nM9740A _model_server_result.datetime_utc '2024-11-05 22:51:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":562}' # _entry.id 3C4X # _exptl.entry_id 3C4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C4X _cell.length_a 54.116 _cell.length_b 95.122 _cell.length_c 234.823 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O1G ATP . A ATP 562 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc2 F O2B ATP . A ATP 562 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 C MG MG . A MG 564 1_555 I O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 C MG MG . A MG 564 1_555 I O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 B OD1 ASN 319 B ASN 319 1_555 G MG MG . B MG 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 H O2A ATP . B ATP 562 1_555 G MG MG . B MG 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3C4X _atom_sites.fract_transf_matrix[1][1] 0.018479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 564 564 MG MG . D 3 CL A 1 565 565 CL CL . E 3 CL A 1 566 566 CL CL . F 4 ATP A 1 562 562 ATP ATP . G 2 MG B 1 563 563 MG MG . H 4 ATP B 1 562 562 ATP ATP . I 5 HOH A 1 567 2 HOH HOH . I 5 HOH A 2 568 3 HOH HOH . I 5 HOH A 3 569 5 HOH HOH . I 5 HOH A 4 570 8 HOH HOH . I 5 HOH A 5 571 9 HOH HOH . I 5 HOH A 6 572 10 HOH HOH . I 5 HOH A 7 573 11 HOH HOH . I 5 HOH A 8 574 12 HOH HOH . I 5 HOH A 9 575 13 HOH HOH . I 5 HOH A 10 576 14 HOH HOH . I 5 HOH A 11 577 15 HOH HOH . I 5 HOH A 12 578 16 HOH HOH . I 5 HOH A 13 579 17 HOH HOH . I 5 HOH A 14 580 18 HOH HOH . I 5 HOH A 15 581 19 HOH HOH . I 5 HOH A 16 582 20 HOH HOH . I 5 HOH A 17 583 22 HOH HOH . I 5 HOH A 18 584 23 HOH HOH . I 5 HOH A 19 585 24 HOH HOH . I 5 HOH A 20 586 25 HOH HOH . I 5 HOH A 21 587 26 HOH HOH . I 5 HOH A 22 588 28 HOH HOH . I 5 HOH A 23 589 29 HOH HOH . I 5 HOH A 24 590 30 HOH HOH . I 5 HOH A 25 591 31 HOH HOH . I 5 HOH A 26 592 32 HOH HOH . I 5 HOH A 27 593 33 HOH HOH . I 5 HOH A 28 594 34 HOH HOH . I 5 HOH A 29 595 35 HOH HOH . I 5 HOH A 30 596 36 HOH HOH . I 5 HOH A 31 597 37 HOH HOH . I 5 HOH A 32 598 38 HOH HOH . I 5 HOH A 33 599 42 HOH HOH . I 5 HOH A 34 600 43 HOH HOH . I 5 HOH A 35 601 44 HOH HOH . I 5 HOH A 36 602 45 HOH HOH . I 5 HOH A 37 603 46 HOH HOH . I 5 HOH A 38 604 49 HOH HOH . I 5 HOH A 39 605 51 HOH HOH . I 5 HOH A 40 606 52 HOH HOH . I 5 HOH A 41 607 53 HOH HOH . I 5 HOH A 42 608 54 HOH HOH . I 5 HOH A 43 609 55 HOH HOH . I 5 HOH A 44 610 56 HOH HOH . I 5 HOH A 45 611 57 HOH HOH . I 5 HOH A 46 612 58 HOH HOH . I 5 HOH A 47 613 63 HOH HOH . I 5 HOH A 48 614 66 HOH HOH . I 5 HOH A 49 615 67 HOH HOH . I 5 HOH A 50 616 68 HOH HOH . I 5 HOH A 51 617 69 HOH HOH . I 5 HOH A 52 618 72 HOH HOH . I 5 HOH A 53 619 73 HOH HOH . J 5 HOH B 1 564 39 HOH HOH . J 5 HOH B 2 565 40 HOH HOH . J 5 HOH B 3 566 47 HOH HOH . J 5 HOH B 4 567 48 HOH HOH . J 5 HOH B 5 568 59 HOH HOH . J 5 HOH B 6 569 61 HOH HOH . J 5 HOH B 7 570 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 4 7.913 4.86 69.62 1 60.12 ? PG ATP 562 B 1 HETATM 2 O O1G ATP . . . H 4 8.958 5.944 69.753 1 61.63 ? O1G ATP 562 B 1 HETATM 3 O O2G ATP . . . H 4 8.28 3.752 68.653 1 59.45 ? O2G ATP 562 B 1 HETATM 4 O O3G ATP . . . H 4 7.331 4.371 70.925 1 60.31 ? O3G ATP 562 B 1 HETATM 5 P PB ATP . . . H 4 6.652 5.794 67.367 1 53.43 ? PB ATP 562 B 1 HETATM 6 O O1B ATP . . . H 4 7.821 6.637 66.915 1 53.8 ? O1B ATP 562 B 1 HETATM 7 O O2B ATP . . . H 4 6.417 4.414 66.788 1 50.19 ? O2B ATP 562 B 1 HETATM 8 O O3B ATP . . . H 4 6.701 5.667 68.958 1 54.7 ? O3B ATP 562 B 1 HETATM 9 P PA ATP . . . H 4 3.931 6.036 67.727 1 55.32 ? PA ATP 562 B 1 HETATM 10 O O1A ATP . . . H 4 3.354 5.125 66.673 1 55.12 ? O1A ATP 562 B 1 HETATM 11 O O2A ATP . . . H 4 4.125 5.527 69.137 1 55.34 ? O2A ATP 562 B 1 HETATM 12 O O3A ATP . . . H 4 5.313 6.653 67.193 1 54.21 ? O3A ATP 562 B 1 HETATM 13 O O5' ATP . . . H 4 3.079 7.378 67.789 1 52.58 ? O5' ATP 562 B 1 HETATM 14 C C5' ATP . . . H 4 3.51 8.4 68.672 1 53.05 ? C5' ATP 562 B 1 HETATM 15 C C4' ATP . . . H 4 2.394 9.414 68.779 1 52.56 ? C4' ATP 562 B 1 HETATM 16 O O4' ATP . . . H 4 1.887 9.756 67.483 1 53.84 ? O4' ATP 562 B 1 HETATM 17 C C3' ATP . . . H 4 1.22 8.862 69.554 1 50.8 ? C3' ATP 562 B 1 HETATM 18 O O3' ATP . . . H 4 1.392 9.075 70.943 1 52.41 ? O3' ATP 562 B 1 HETATM 19 C C2' ATP . . . H 4 0.057 9.629 68.977 1 51.85 ? C2' ATP 562 B 1 HETATM 20 O O2' ATP . . . H 4 -0.123 10.907 69.579 1 52.72 ? O2' ATP 562 B 1 HETATM 21 C C1' ATP . . . H 4 0.458 9.852 67.532 1 53.01 ? C1' ATP 562 B 1 HETATM 22 N N9 ATP . . . H 4 -0.244 8.822 66.723 1 52.46 ? N9 ATP 562 B 1 HETATM 23 C C8 ATP . . . H 4 0.223 7.632 66.302 1 51.88 ? C8 ATP 562 B 1 HETATM 24 N N7 ATP . . . H 4 -0.732 6.976 65.602 1 51.76 ? N7 ATP 562 B 1 HETATM 25 C C5 ATP . . . H 4 -1.83 7.75 65.583 1 51.95 ? C5 ATP 562 B 1 HETATM 26 C C6 ATP . . . H 4 -3.197 7.677 65.024 1 51.91 ? C6 ATP 562 B 1 HETATM 27 N N6 ATP . . . H 4 -3.587 6.603 64.322 1 51.64 ? N6 ATP 562 B 1 HETATM 28 N N1 ATP . . . H 4 -4.044 8.711 65.233 1 53.3 ? N1 ATP 562 B 1 HETATM 29 C C2 ATP . . . H 4 -3.667 9.803 65.931 1 53.04 ? C2 ATP 562 B 1 HETATM 30 N N3 ATP . . . H 4 -2.439 9.932 66.465 1 52.12 ? N3 ATP 562 B 1 HETATM 31 C C4 ATP . . . H 4 -1.502 8.964 66.326 1 51.64 ? C4 ATP 562 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #