data_3C5T
#
_model_server_result.job_id            3emAqjgkhRbEhzkCE6lN9w 
_model_server_result.datetime_utc      '2024-11-26 20:28:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3C5T 
#
_exptl.entry_id    3C5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.628 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3C5T 
_cell.length_a            75.91 
_cell.length_b            75.91 
_cell.length_c            87.77 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 46 1_555 A SG CYS 48 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
disulf ? disulf2 A SG CYS 39 A CYS 62 1_555 A SG CYS 81 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 62 A CYS 85 1_555 A SG CYS 103 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
#
_chem_comp.formula           'C22 H42 O10 S' 
_chem_comp.formula_weight    498.628 
_chem_comp.id                10M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '(2R,3R,4S,5S,6R)-2-((2R,3S,4R,5R,6S)-6-Decylsulfanyl-4,5-dihydroxy-2-hydroxymethyl-tetrahydro-pyran-3-yloxy)-6-hydroxymethyl-tetrahydro-pyran-3,4,5-triol, n-Decyl-beta-D-thiomaltoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O10 C22 10M sing 1 n n 
C22 C21 10M sing 2 n n 
C22 C11 10M sing 3 n n 
C21 O9 10M sing 4 n n 
C21 C14 10M sing 5 n n 
C14 O3 10M sing 6 n n 
C14 C12 10M sing 7 n n 
O3 C15 10M sing 8 n n 
C15 C20 10M sing 9 n n 
C15 O4 10M sing 10 n n 
C20 O8 10M sing 11 n n 
C20 C19 10M sing 12 n n 
C19 O7 10M sing 13 n n 
C19 C18 10M sing 14 n n 
C18 O6 10M sing 15 n n 
C18 C16 10M sing 16 n n 
C16 C17 10M sing 17 n n 
C16 O4 10M sing 18 n n 
C17 O5 10M sing 19 n n 
C12 C13 10M sing 20 n n 
C12 O1 10M sing 21 n n 
C13 O2 10M sing 22 n n 
O1 C11 10M sing 23 n n 
C11 S 10M sing 24 n n 
S C10 10M sing 25 n n 
C10 C9 10M sing 26 n n 
C9 C8 10M sing 27 n n 
C8 C7 10M sing 28 n n 
C7 C6 10M sing 29 n n 
C6 C5 10M sing 30 n n 
C5 C4 10M sing 31 n n 
C4 C3 10M sing 32 n n 
C3 C2 10M sing 33 n n 
C2 C1 10M sing 34 n n 
O10 HO10 10M sing 35 n n 
C22 H22 10M sing 36 n n 
C21 H21 10M sing 37 n n 
O9 HO9 10M sing 38 n n 
C14 H14 10M sing 39 n n 
C15 H15 10M sing 40 n n 
C20 H20 10M sing 41 n n 
O8 HO8 10M sing 42 n n 
C19 H19 10M sing 43 n n 
O7 HO7 10M sing 44 n n 
C18 H18 10M sing 45 n n 
O6 HO6 10M sing 46 n n 
C16 H16 10M sing 47 n n 
C17 H17 10M sing 48 n n 
C17 H17A 10M sing 49 n n 
O5 HO5 10M sing 50 n n 
C12 H12 10M sing 51 n n 
C13 H13 10M sing 52 n n 
C13 H13A 10M sing 53 n n 
O2 HO2 10M sing 54 n n 
C11 H11 10M sing 55 n n 
C10 H10 10M sing 56 n n 
C10 H10A 10M sing 57 n n 
C9 H9 10M sing 58 n n 
C9 H9A 10M sing 59 n n 
C8 H8 10M sing 60 n n 
C8 H8A 10M sing 61 n n 
C7 H7 10M sing 62 n n 
C7 H7A 10M sing 63 n n 
C6 H6 10M sing 64 n n 
C6 H6A 10M sing 65 n n 
C5 H5 10M sing 66 n n 
C5 H5A 10M sing 67 n n 
C4 H4 10M sing 68 n n 
C4 H4A 10M sing 69 n n 
C3 H3 10M sing 70 n n 
C3 H3A 10M sing 71 n n 
C2 H2 10M sing 72 n n 
C2 H2A 10M sing 73 n n 
C1 H1 10M sing 74 n n 
C1 H1A 10M sing 75 n n 
C1 H1B 10M sing 76 n n 
#
_atom_sites.entry_id                     3C5T 
_atom_sites.fract_transf_matrix[1][1]    0.013173 
_atom_sites.fract_transf_matrix[1][2]    0.007606 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 10M A 1 1 1 10M 10M . 
D 4 HOH A 1 146 1 HOH HOH . 
D 4 HOH A 2 147 2 HOH HOH . 
D 4 HOH A 3 148 3 HOH HOH . 
D 4 HOH A 4 149 4 HOH HOH . 
D 4 HOH A 5 150 5 HOH HOH . 
D 4 HOH A 6 151 6 HOH HOH . 
D 4 HOH A 7 152 7 HOH HOH . 
D 4 HOH A 8 153 8 HOH HOH . 
D 4 HOH A 9 154 9 HOH HOH . 
D 4 HOH A 10 155 10 HOH HOH . 
D 4 HOH A 11 156 11 HOH HOH . 
D 4 HOH A 12 157 12 HOH HOH . 
D 4 HOH A 13 158 13 HOH HOH . 
D 4 HOH A 14 159 14 HOH HOH . 
D 4 HOH A 15 160 15 HOH HOH . 
D 4 HOH A 16 161 16 HOH HOH . 
D 4 HOH A 17 162 17 HOH HOH . 
D 4 HOH A 18 163 19 HOH HOH . 
D 4 HOH A 19 164 20 HOH HOH . 
D 4 HOH A 20 165 21 HOH HOH . 
D 4 HOH A 21 166 23 HOH HOH . 
D 4 HOH A 22 167 24 HOH HOH . 
D 4 HOH A 23 168 25 HOH HOH . 
D 4 HOH A 24 169 26 HOH HOH . 
D 4 HOH A 25 170 28 HOH HOH . 
D 4 HOH A 26 171 29 HOH HOH . 
D 4 HOH A 27 172 30 HOH HOH . 
D 4 HOH A 28 173 31 HOH HOH . 
D 4 HOH A 29 174 32 HOH HOH . 
D 4 HOH A 30 175 33 HOH HOH . 
D 4 HOH A 31 176 34 HOH HOH . 
D 4 HOH A 32 177 35 HOH HOH . 
D 4 HOH A 33 178 36 HOH HOH . 
D 4 HOH A 34 179 37 HOH HOH . 
D 4 HOH A 35 180 38 HOH HOH . 
D 4 HOH A 36 181 39 HOH HOH . 
D 4 HOH A 37 182 40 HOH HOH . 
D 4 HOH A 38 183 41 HOH HOH . 
D 4 HOH A 39 184 42 HOH HOH . 
D 4 HOH A 40 185 43 HOH HOH . 
D 4 HOH A 41 186 44 HOH HOH . 
D 4 HOH A 42 187 45 HOH HOH . 
D 4 HOH A 43 188 47 HOH HOH . 
D 4 HOH A 44 189 48 HOH HOH . 
D 4 HOH A 45 190 50 HOH HOH . 
D 4 HOH A 46 191 53 HOH HOH . 
D 4 HOH A 47 192 55 HOH HOH . 
D 4 HOH A 48 193 56 HOH HOH . 
D 4 HOH A 49 194 57 HOH HOH . 
D 4 HOH A 50 195 58 HOH HOH . 
D 4 HOH A 51 196 59 HOH HOH . 
D 4 HOH A 52 197 60 HOH HOH . 
D 4 HOH A 53 198 61 HOH HOH . 
D 4 HOH A 54 199 62 HOH HOH . 
D 4 HOH A 55 200 63 HOH HOH . 
D 4 HOH A 56 201 64 HOH HOH . 
D 4 HOH A 57 202 65 HOH HOH . 
D 4 HOH A 58 203 67 HOH HOH . 
D 4 HOH A 59 204 68 HOH HOH . 
D 4 HOH A 60 205 71 HOH HOH . 
D 4 HOH A 61 206 72 HOH HOH . 
D 4 HOH A 62 207 73 HOH HOH . 
D 4 HOH A 63 208 74 HOH HOH . 
D 4 HOH A 64 209 75 HOH HOH . 
D 4 HOH A 65 210 78 HOH HOH . 
D 4 HOH A 66 211 79 HOH HOH . 
D 4 HOH A 67 212 80 HOH HOH . 
D 4 HOH A 68 213 83 HOH HOH . 
D 4 HOH A 69 214 85 HOH HOH . 
D 4 HOH A 70 215 86 HOH HOH . 
D 4 HOH A 71 216 87 HOH HOH . 
D 4 HOH A 72 217 88 HOH HOH . 
D 4 HOH A 73 218 89 HOH HOH . 
D 4 HOH A 74 219 90 HOH HOH . 
D 4 HOH A 75 220 91 HOH HOH . 
D 4 HOH A 76 221 92 HOH HOH . 
D 4 HOH A 77 222 93 HOH HOH . 
D 4 HOH A 78 223 94 HOH HOH . 
D 4 HOH A 79 224 95 HOH HOH . 
D 4 HOH A 80 225 96 HOH HOH . 
D 4 HOH A 81 226 97 HOH HOH . 
D 4 HOH A 82 227 98 HOH HOH . 
D 4 HOH A 83 228 99 HOH HOH . 
D 4 HOH A 84 229 100 HOH HOH . 
D 4 HOH A 85 230 101 HOH HOH . 
D 4 HOH A 86 231 102 HOH HOH . 
D 4 HOH A 87 232 103 HOH HOH . 
D 4 HOH A 88 233 104 HOH HOH . 
D 4 HOH A 89 234 105 HOH HOH . 
D 4 HOH A 90 235 106 HOH HOH . 
D 4 HOH A 91 236 108 HOH HOH . 
D 4 HOH A 92 237 109 HOH HOH . 
D 4 HOH A 93 238 112 HOH HOH . 
D 4 HOH A 94 239 113 HOH HOH . 
D 4 HOH A 95 240 114 HOH HOH . 
D 4 HOH A 96 241 115 HOH HOH . 
D 4 HOH A 97 242 116 HOH HOH . 
D 4 HOH A 98 243 117 HOH HOH . 
D 4 HOH A 99 244 118 HOH HOH . 
D 4 HOH A 100 245 119 HOH HOH . 
D 4 HOH A 101 246 123 HOH HOH . 
D 4 HOH A 102 247 125 HOH HOH . 
D 4 HOH A 103 248 126 HOH HOH . 
D 4 HOH A 104 249 127 HOH HOH . 
D 4 HOH A 105 250 121 HOH HOH . 
E 4 HOH B 1 40 18 HOH HOH . 
E 4 HOH B 2 41 22 HOH HOH . 
E 4 HOH B 3 42 27 HOH HOH . 
E 4 HOH B 4 43 46 HOH HOH . 
E 4 HOH B 5 44 49 HOH HOH . 
E 4 HOH B 6 45 51 HOH HOH . 
E 4 HOH B 7 46 52 HOH HOH . 
E 4 HOH B 8 47 54 HOH HOH . 
E 4 HOH B 9 48 66 HOH HOH . 
E 4 HOH B 10 49 69 HOH HOH . 
E 4 HOH B 11 50 70 HOH HOH . 
E 4 HOH B 12 51 76 HOH HOH . 
E 4 HOH B 13 52 77 HOH HOH . 
E 4 HOH B 14 53 81 HOH HOH . 
E 4 HOH B 15 54 82 HOH HOH . 
E 4 HOH B 16 55 84 HOH HOH . 
E 4 HOH B 17 56 107 HOH HOH . 
E 4 HOH B 18 57 111 HOH HOH . 
E 4 HOH B 19 58 120 HOH HOH . 
E 4 HOH B 20 60 122 HOH HOH . 
E 4 HOH B 21 61 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 10M . . . C 3 -29.774 32.962 2.787 1 55.01 ? O10 10M 1 A 1 
HETATM 2 C C22 10M . . . C 3 -30.883 32.087 2.672 1 54.12 ? C22 10M 1 A 1 
HETATM 3 C C21 10M . . . C 3 -32.158 32.771 3.143 1 56.42 ? C21 10M 1 A 1 
HETATM 4 O O9 10M . . . C 3 -32.481 33.762 2.172 1 59.08 ? O9 10M 1 A 1 
HETATM 5 C C14 10M . . . C 3 -33.318 31.791 3.265 1 59.99 ? C14 10M 1 A 1 
HETATM 6 O O3 10M . . . C 3 -34.366 32.433 3.98 1 68.92 ? O3 10M 1 A 1 
HETATM 7 C C15 10M . . . C 3 -35.679 32.45 3.387 1 76.72 ? C15 10M 1 A 1 
HETATM 8 C C20 10M . . . C 3 -36.52 33.589 3.967 1 79.98 ? C20 10M 1 A 1 
HETATM 9 O O8 10M . . . C 3 -35.987 34.865 3.587 1 80.17 ? O8 10M 1 A 1 
HETATM 10 C C19 10M . . . C 3 -36.584 33.473 5.497 1 82.85 ? C19 10M 1 A 1 
HETATM 11 O O7 10M . . . C 3 -37.494 34.474 5.974 1 84.38 ? O7 10M 1 A 1 
HETATM 12 C C18 10M . . . C 3 -36.98 32.069 6.016 1 84.04 ? C18 10M 1 A 1 
HETATM 13 O O6 10M . . . C 3 -36.414 31.8 7.323 1 84.84 ? O6 10M 1 A 1 
HETATM 14 C C16 10M . . . C 3 -36.581 30.902 5.087 1 83.26 ? C16 10M 1 A 1 
HETATM 15 C C17 10M . . . C 3 -37.638 29.793 5.155 1 84.96 ? C17 10M 1 A 1 
HETATM 16 O O5 10M . . . C 3 -37.429 29.013 6.349 1 88.66 ? O5 10M 1 A 1 
HETATM 17 O O4 10M . . . C 3 -36.413 31.258 3.695 1 80.09 ? O4 10M 1 A 1 
HETATM 18 C C12 10M . . . C 3 -32.881 30.544 4.044 1 57.01 ? C12 10M 1 A 1 
HETATM 19 C C13 10M . . . C 3 -33.948 29.468 3.992 1 55.35 ? C13 10M 1 A 1 
HETATM 20 O O2 10M . . . C 3 -33.594 28.42 4.88 1 55.34 ? O2 10M 1 A 1 
HETATM 21 O O1 10M . . . C 3 -31.685 29.988 3.482 1 53.03 ? O1 10M 1 A 1 
HETATM 22 C C11 10M . . . C 3 -30.568 30.874 3.518 1 52.12 ? C11 10M 1 A 1 
HETATM 23 S S 10M . . . C 3 -29.122 30.098 2.874 1 46.77 ? S 10M 1 A 1 
HETATM 24 C C10 10M . . . C 3 -28.446 29.015 4.11 1 52.46 ? C10 10M 1 A 1 
HETATM 25 C C9 10M . . . C 3 -28.162 29.76 5.416 1 55.66 ? C9 10M 1 A 1 
HETATM 26 C C8 10M . . . C 3 -26.686 30.07 5.633 1 59.37 ? C8 10M 1 A 1 
HETATM 27 C C7 10M . . . C 3 -26.081 29.339 6.836 1 61.99 ? C7 10M 1 A 1 
HETATM 28 C C6 10M . . . C 3 -25.177 30.222 7.705 1 63.38 ? C6 10M 1 A 1 
HETATM 29 C C5 10M . . . C 3 -23.809 29.593 8.043 1 64.63 ? C5 10M 1 A 1 
HETATM 30 C C4 10M . . . C 3 -23.831 28.08 8.308 1 65.35 ? C4 10M 1 A 1 
HETATM 31 C C3 10M . . . C 3 -22.419 27.482 8.409 1 65.16 ? C3 10M 1 A 1 
HETATM 32 C C2 10M . . . C 3 -22.49 25.97 8.675 1 66.74 ? C2 10M 1 A 1 
HETATM 33 C C1 10M . . . C 3 -21.276 25.181 8.208 1 65.53 ? C1 10M 1 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#