data_3C6E # _model_server_result.job_id g9ZbcgUPKyZ53luKPapWqQ _model_server_result.datetime_utc '2024-11-18 00:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1397}' # _entry.id 3C6E # _exptl.entry_id 3C6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C6E _cell.length_a 71.104 _cell.length_b 108.366 _cell.length_c 108.956 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NDG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 1398 NAG 3 n C NDG 2 B 2 NDG A 1399 NDG 3 n C MAN 3 B 3 MAN A 1400 MAN 3 n C MAN 4 B 4 MAN A 1402 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 3 1_555 A SG CYS 38 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 68 A CYS 60 1_555 A SG CYS 129 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 82 A CYS 74 1_555 A SG CYS 113 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 100 A CYS 92 1_555 A SG CYS 124 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 193 A CYS 185 1_555 A SG CYS 293 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 A SG CYS 310 A CYS 302 1_555 A SG CYS 341 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 34 C CYS 34 1_555 B SG CYS 68 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 B SG CYS 45 C CYS 45 1_555 B SG CYS 80 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 53 C CYS 53 1_555 B SG CYS 66 C CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 C O4 NAG . B NAG 1 1_555 C C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale3 C O4 NDG . B NDG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.658 ? covale ? covale4 C O3 MAN . B MAN 3 1_555 C C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.087 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3C6E _atom_sites.fract_transf_matrix[1][1] 0.014064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NDG C 1 1396 1396 NDG NDG . E 5 NAG C 1 1397 1397 NAG NAG . F 6 HOH A 1 1399 1 HOH HOH . F 6 HOH A 2 1400 2 HOH HOH . F 6 HOH A 3 1401 3 HOH HOH . F 6 HOH A 4 1402 4 HOH HOH . F 6 HOH A 5 1403 6 HOH HOH . F 6 HOH A 6 1404 7 HOH HOH . F 6 HOH A 7 1405 8 HOH HOH . F 6 HOH A 8 1406 10 HOH HOH . F 6 HOH A 9 1407 11 HOH HOH . F 6 HOH A 10 1408 12 HOH HOH . F 6 HOH A 11 1409 13 HOH HOH . F 6 HOH A 12 1410 14 HOH HOH . F 6 HOH A 13 1411 15 HOH HOH . F 6 HOH A 14 1412 16 HOH HOH . F 6 HOH A 15 1413 18 HOH HOH . F 6 HOH A 16 1414 19 HOH HOH . F 6 HOH A 17 1415 20 HOH HOH . F 6 HOH A 18 1416 21 HOH HOH . F 6 HOH A 19 1417 22 HOH HOH . F 6 HOH A 20 1418 23 HOH HOH . F 6 HOH A 21 1419 24 HOH HOH . F 6 HOH A 22 1420 25 HOH HOH . F 6 HOH A 23 1421 27 HOH HOH . F 6 HOH A 24 1422 28 HOH HOH . F 6 HOH A 25 1423 31 HOH HOH . F 6 HOH A 26 1424 32 HOH HOH . F 6 HOH A 27 1425 33 HOH HOH . F 6 HOH A 28 1426 34 HOH HOH . F 6 HOH A 29 1427 35 HOH HOH . F 6 HOH A 30 1428 36 HOH HOH . F 6 HOH A 31 1429 37 HOH HOH . F 6 HOH A 32 1430 38 HOH HOH . F 6 HOH A 33 1431 43 HOH HOH . F 6 HOH A 34 1432 44 HOH HOH . F 6 HOH A 35 1433 45 HOH HOH . F 6 HOH A 36 1434 46 HOH HOH . F 6 HOH A 37 1435 47 HOH HOH . F 6 HOH A 38 1436 48 HOH HOH . G 6 HOH C 1 1403 17 HOH HOH . G 6 HOH C 2 1404 29 HOH HOH . G 6 HOH C 3 1405 30 HOH HOH . G 6 HOH C 4 1406 39 HOH HOH . G 6 HOH C 5 1407 40 HOH HOH . G 6 HOH C 6 1408 41 HOH HOH . G 6 HOH C 7 1409 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 4.023 12.168 -56.939 1 92.08 ? C1 NAG 1397 C 1 HETATM 2 C C2 NAG . . . E 5 3.832 13.685 -57.016 1 91.65 ? C2 NAG 1397 C 1 HETATM 3 C C3 NAG . . . E 5 3.01 14.142 -55.802 1 91.87 ? C3 NAG 1397 C 1 HETATM 4 C C4 NAG . . . E 5 1.68 13.378 -55.746 1 90.96 ? C4 NAG 1397 C 1 HETATM 5 C C5 NAG . . . E 5 1.921 11.859 -55.807 1 90.88 ? C5 NAG 1397 C 1 HETATM 6 C C6 NAG . . . E 5 0.628 11.08 -55.946 1 90.41 ? C6 NAG 1397 C 1 HETATM 7 C C7 NAG . . . E 5 6.22 13.902 -56.579 1 89.66 ? C7 NAG 1397 C 1 HETATM 8 C C8 NAG . . . E 5 7.202 13.24 -57.532 1 89.5 ? C8 NAG 1397 C 1 HETATM 9 N N2 NAG . . . E 5 5.099 14.4 -57.096 1 90.63 ? N2 NAG 1397 C 1 HETATM 10 O O1 NAG . . . E 5 4.744 11.726 -58.039 1 92.21 ? O1 NAG 1397 C 1 HETATM 11 O O3 NAG . . . E 5 2.75 15.537 -55.889 1 93.51 ? O3 NAG 1397 C 1 HETATM 12 O O4 NAG . . . E 5 0.98 13.712 -54.531 1 88.09 ? O4 NAG 1397 C 1 HETATM 13 O O5 NAG . . . E 5 2.739 11.516 -56.951 1 92.14 ? O5 NAG 1397 C 1 HETATM 14 O O6 NAG . . . E 5 -0.482 11.837 -55.484 1 89.26 ? O6 NAG 1397 C 1 HETATM 15 O O7 NAG . . . E 5 6.491 13.978 -55.384 1 89.9 ? O7 NAG 1397 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #