data_3C7I # _model_server_result.job_id snrauTgSqomFzbiIg4P4oA _model_server_result.datetime_utc '2025-02-27 00:39:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":202}' # _entry.id 3C7I # _exptl.entry_id 3C7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2R)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-valyl-L-aspartamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C7I _cell.length_a 42.053 _cell.length_b 42.053 _cell.length_c 109.426 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H32 N5 O9 P' _chem_comp.formula_weight 529.481 _chem_comp.id TVN _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2R)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-valyl-L-aspartamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBH HOBH TVN sing 325 n n PBF OBH TVN sing 326 n n PBF OBE TVN sing 327 n n PBF OBG TVN sing 328 n n OBI PBF TVN doub 329 n n OBG HOBG TVN sing 330 n n OBE CBD TVN sing 331 n n CBD CBC TVN doub 332 n y CBD CBJ TVN sing 333 n y CBC CBB TVN sing 334 n y CBC HBC TVN sing 335 n n CBB CBA TVN doub 336 n y CBB HBB TVN sing 337 n n CBJ CBK TVN doub 338 n y CBJ HBJ TVN sing 339 n n CBK CBA TVN sing 340 n y CBK HBK TVN sing 341 n n CBA CAZ TVN sing 342 n n CAZ HAZ TVN sing 343 n n CAZ HAZA TVN sing 344 n n CAF CAG TVN sing 345 n n CAF HAF TVN sing 346 n n CAF HAFA TVN sing 347 n n CAC CAF TVN sing 348 n n OAD CAC TVN doub 349 n n NAB CAC TVN sing 350 n n NAB H31 TVN sing 351 n n CAA NAB TVN sing 352 n n CAA HAA TVN sing 353 n n CAA HAAA TVN sing 354 n n CAA H32 TVN sing 355 n n CAG CAZ TVN sing 356 n n CAG CAH TVN sing 357 n n CAG HAG TVN sing 358 n n CAH OAI TVN doub 359 n n CAH NAJ TVN sing 360 n n NAJ CAK TVN sing 361 n n NAJ HNAJ TVN sing 362 n n CAK CAW TVN sing 363 n n CAK CAL TVN sing 364 n n CAK HAK TVN sing 365 n n CAW CAY TVN sing 366 n n CAW HAW TVN sing 367 n n CAX CAW TVN sing 368 n n CAX HAX TVN sing 369 n n CAX HAXA TVN sing 370 n n CAX HAXB TVN sing 371 n n CAY HAY TVN sing 372 n n CAY HAYA TVN sing 373 n n CAY HAYB TVN sing 374 n n CAL NAN TVN sing 375 n n CAL OAM TVN doub 376 n n NAN CAO TVN sing 377 n n NAN HNAN TVN sing 378 n n CAO CAP TVN sing 379 n n CAO HAO TVN sing 380 n n CAT CAO TVN sing 381 n n CAT OAV TVN doub 382 n n NAU CAT TVN sing 383 n n NAU HNAU TVN sing 384 n n NAU HNAA TVN sing 385 n n CAP HAP TVN sing 386 n n CAP HAPA TVN sing 387 n n CAQ CAP TVN sing 388 n n CAQ NAR TVN sing 389 n n OAS CAQ TVN doub 390 n n NAR HNAR TVN sing 391 n n NAR HNAB TVN sing 392 n n # _atom_sites.entry_id 3C7I _atom_sites.fract_transf_matrix[1][1] 0.02378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TVN A 1 202 202 TVN TVN . C 3 FMT A 1 201 201 FMT FMT . D 4 HOH A 1 203 1 HOH HOH . D 4 HOH A 2 204 2 HOH HOH . D 4 HOH A 3 205 3 HOH HOH . D 4 HOH A 4 206 4 HOH HOH . D 4 HOH A 5 207 5 HOH HOH . D 4 HOH A 6 208 6 HOH HOH . D 4 HOH A 7 209 7 HOH HOH . D 4 HOH A 8 210 8 HOH HOH . D 4 HOH A 9 211 9 HOH HOH . D 4 HOH A 10 212 10 HOH HOH . D 4 HOH A 11 213 11 HOH HOH . D 4 HOH A 12 214 12 HOH HOH . D 4 HOH A 13 215 13 HOH HOH . D 4 HOH A 14 216 14 HOH HOH . D 4 HOH A 15 217 15 HOH HOH . D 4 HOH A 16 218 16 HOH HOH . D 4 HOH A 17 219 17 HOH HOH . D 4 HOH A 18 220 18 HOH HOH . D 4 HOH A 19 221 19 HOH HOH . D 4 HOH A 20 222 20 HOH HOH . D 4 HOH A 21 223 21 HOH HOH . D 4 HOH A 22 224 22 HOH HOH . D 4 HOH A 23 225 23 HOH HOH . D 4 HOH A 24 226 24 HOH HOH . D 4 HOH A 25 227 25 HOH HOH . D 4 HOH A 26 228 26 HOH HOH . D 4 HOH A 27 229 27 HOH HOH . D 4 HOH A 28 230 28 HOH HOH . D 4 HOH A 29 231 29 HOH HOH . D 4 HOH A 30 232 30 HOH HOH . D 4 HOH A 31 233 31 HOH HOH . D 4 HOH A 32 234 32 HOH HOH . D 4 HOH A 33 235 33 HOH HOH . D 4 HOH A 34 236 34 HOH HOH . D 4 HOH A 35 237 35 HOH HOH . D 4 HOH A 36 238 36 HOH HOH . D 4 HOH A 37 239 37 HOH HOH . D 4 HOH A 38 240 38 HOH HOH . D 4 HOH A 39 241 39 HOH HOH . D 4 HOH A 40 242 40 HOH HOH . D 4 HOH A 41 243 41 HOH HOH . D 4 HOH A 42 244 42 HOH HOH . D 4 HOH A 43 245 43 HOH HOH . D 4 HOH A 44 246 44 HOH HOH . D 4 HOH A 45 247 45 HOH HOH . D 4 HOH A 46 248 46 HOH HOH . D 4 HOH A 47 249 47 HOH HOH . D 4 HOH A 48 250 48 HOH HOH . D 4 HOH A 49 251 49 HOH HOH . D 4 HOH A 50 252 50 HOH HOH . D 4 HOH A 51 253 51 HOH HOH . D 4 HOH A 52 254 52 HOH HOH . D 4 HOH A 53 255 53 HOH HOH . D 4 HOH A 54 256 54 HOH HOH . D 4 HOH A 55 257 55 HOH HOH . D 4 HOH A 56 258 56 HOH HOH . D 4 HOH A 57 259 57 HOH HOH . D 4 HOH A 58 260 58 HOH HOH . D 4 HOH A 59 261 59 HOH HOH . D 4 HOH A 60 262 60 HOH HOH . D 4 HOH A 61 263 61 HOH HOH . D 4 HOH A 62 264 62 HOH HOH . D 4 HOH A 63 265 63 HOH HOH . D 4 HOH A 64 266 64 HOH HOH . D 4 HOH A 65 267 65 HOH HOH . D 4 HOH A 66 268 66 HOH HOH . D 4 HOH A 67 269 67 HOH HOH . D 4 HOH A 68 270 68 HOH HOH . D 4 HOH A 69 271 69 HOH HOH . D 4 HOH A 70 272 70 HOH HOH . D 4 HOH A 71 273 71 HOH HOH . D 4 HOH A 72 274 72 HOH HOH . D 4 HOH A 73 275 73 HOH HOH . D 4 HOH A 74 276 74 HOH HOH . D 4 HOH A 75 277 75 HOH HOH . D 4 HOH A 76 278 76 HOH HOH . D 4 HOH A 77 279 77 HOH HOH . D 4 HOH A 78 280 78 HOH HOH . D 4 HOH A 79 281 79 HOH HOH . D 4 HOH A 80 282 80 HOH HOH . D 4 HOH A 81 283 81 HOH HOH . D 4 HOH A 82 284 82 HOH HOH . D 4 HOH A 83 285 83 HOH HOH . D 4 HOH A 84 286 84 HOH HOH . D 4 HOH A 85 287 85 HOH HOH . D 4 HOH A 86 288 86 HOH HOH . D 4 HOH A 87 289 87 HOH HOH . D 4 HOH A 88 290 88 HOH HOH . D 4 HOH A 89 291 89 HOH HOH . D 4 HOH A 90 292 90 HOH HOH . D 4 HOH A 91 293 91 HOH HOH . D 4 HOH A 92 294 92 HOH HOH . D 4 HOH A 93 295 93 HOH HOH . D 4 HOH A 94 296 94 HOH HOH . D 4 HOH A 95 297 95 HOH HOH . D 4 HOH A 96 298 96 HOH HOH . D 4 HOH A 97 299 97 HOH HOH . D 4 HOH A 98 300 98 HOH HOH . D 4 HOH A 99 301 99 HOH HOH . D 4 HOH A 100 302 100 HOH HOH . D 4 HOH A 101 303 101 HOH HOH . D 4 HOH A 102 304 102 HOH HOH . D 4 HOH A 103 305 103 HOH HOH . D 4 HOH A 104 306 104 HOH HOH . D 4 HOH A 105 307 105 HOH HOH . D 4 HOH A 106 308 106 HOH HOH . D 4 HOH A 107 309 107 HOH HOH . D 4 HOH A 108 310 108 HOH HOH . D 4 HOH A 109 311 109 HOH HOH . D 4 HOH A 110 312 110 HOH HOH . D 4 HOH A 111 313 111 HOH HOH . D 4 HOH A 112 314 113 HOH HOH . D 4 HOH A 113 315 114 HOH HOH . D 4 HOH A 114 316 115 HOH HOH . D 4 HOH A 115 317 116 HOH HOH . D 4 HOH A 116 318 117 HOH HOH . D 4 HOH A 117 319 118 HOH HOH . D 4 HOH A 118 320 119 HOH HOH . D 4 HOH A 119 321 120 HOH HOH . D 4 HOH A 120 322 121 HOH HOH . D 4 HOH A 121 323 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OBH TVN . . . B 2 -11.43 8.407 -5.528 1 16.81 ? OBH TVN 202 A 1 HETATM 2 P PBF TVN . . . B 2 -9.885 8.699 -5.865 1 12.69 ? PBF TVN 202 A 1 HETATM 3 O OBI TVN . . . B 2 -9.752 8.592 -7.466 1 18.1 ? OBI TVN 202 A 1 HETATM 4 O OBG TVN . . . B 2 -8.958 7.77 -5.179 1 18.16 ? OBG TVN 202 A 1 HETATM 5 O OBE TVN . . . B 2 -9.596 10.252 -5.541 1 17.44 ? OBE TVN 202 A 1 HETATM 6 C CBD TVN . . . B 2 -9.86 10.715 -4.288 1 17.35 ? CBD TVN 202 A 1 HETATM 7 C CBC TVN . . . B 2 -9.5 12.032 -4.031 1 18.39 ? CBC TVN 202 A 1 HETATM 8 C CBB TVN . . . B 2 -9.838 12.642 -2.823 1 18.27 ? CBB TVN 202 A 1 HETATM 9 C CBJ TVN . . . B 2 -10.552 9.996 -3.313 1 17.72 ? CBJ TVN 202 A 1 HETATM 10 C CBK TVN . . . B 2 -10.89 10.602 -2.105 1 18.85 ? CBK TVN 202 A 1 HETATM 11 C CBA TVN . . . B 2 -10.541 11.929 -1.861 1 18.91 ? CBA TVN 202 A 1 HETATM 12 C CAZ TVN . . . B 2 -10.967 12.646 -0.575 1 19.49 ? CAZ TVN 202 A 1 HETATM 13 C CAF TVN . . . B 2 -12.614 14.173 -1.796 1 22.5 ? CAF TVN 202 A 1 HETATM 14 C CAC TVN . . . B 2 -12.864 13.459 -3.127 1 26.5 ? CAC TVN 202 A 1 HETATM 15 O OAD TVN . . . B 2 -13.555 12.445 -3.182 1 26.73 ? OAD TVN 202 A 1 HETATM 16 N NAB TVN . . . B 2 -12.288 14.032 -4.182 1 26.91 ? NAB TVN 202 A 1 HETATM 17 C CAA TVN . . . B 2 -12.653 13.529 -5.515 1 27.27 ? CAA TVN 202 A 1 HETATM 18 C CAG TVN . . . B 2 -12.394 13.201 -0.631 1 20.3 ? CAG TVN 202 A 1 HETATM 19 C CAH TVN . . . B 2 -12.75 13.925 0.671 1 19.3 ? CAH TVN 202 A 1 HETATM 20 O OAI TVN . . . B 2 -12.391 15.085 0.873 1 17.31 ? OAI TVN 202 A 1 HETATM 21 N NAJ TVN . . . B 2 -13.447 13.203 1.54 1 17.33 ? NAJ TVN 202 A 1 HETATM 22 C CAK TVN . . . B 2 -13.914 13.721 2.839 1 17.37 ? CAK TVN 202 A 1 HETATM 23 C CAW TVN . . . B 2 -14.656 12.619 3.601 1 19 ? CAW TVN 202 A 1 HETATM 24 C CAX TVN . . . B 2 -15.832 12.085 2.78 1 20.3 ? CAX TVN 202 A 1 HETATM 25 C CAY TVN . . . B 2 -15.164 13.114 4.958 1 18.67 ? CAY TVN 202 A 1 HETATM 26 C CAL TVN . . . B 2 -12.783 14.299 3.696 1 18.16 ? CAL TVN 202 A 1 HETATM 27 O OAM TVN . . . B 2 -12.943 15.361 4.299 1 17.93 ? OAM TVN 202 A 1 HETATM 28 N NAN TVN . . . B 2 -11.662 13.587 3.731 1 15.91 ? NAN TVN 202 A 1 HETATM 29 C CAO TVN . . . B 2 -10.497 14.01 4.524 1 17.82 ? CAO TVN 202 A 1 HETATM 30 C CAT TVN . . . B 2 -9.45 14.705 3.651 1 19.04 ? CAT TVN 202 A 1 HETATM 31 O OAV TVN . . . B 2 -8.285 14.821 4.029 1 22.73 ? OAV TVN 202 A 1 HETATM 32 N NAU TVN . . . B 2 -9.902 15.173 2.492 1 21.13 ? NAU TVN 202 A 1 HETATM 33 C CAP TVN . . . B 2 -9.897 12.806 5.258 1 16.93 ? CAP TVN 202 A 1 HETATM 34 C CAQ TVN . . . B 2 -9.417 11.709 4.306 1 16.2 ? CAQ TVN 202 A 1 HETATM 35 O OAS TVN . . . B 2 -9.875 11.603 3.167 1 15.02 ? OAS TVN 202 A 1 HETATM 36 N NAR TVN . . . B 2 -8.483 10.907 4.806 1 15.15 ? NAR TVN 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #