data_3C8F
#
_model_server_result.job_id            CMItCQwjnSdVic1EFNrrbg 
_model_server_result.datetime_utc      '2024-12-26 12:16:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3C8F 
#
_exptl.entry_id    3C8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.272 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3S)-3-amino-3-carboxypropyl](ethyl)methylsulfonium' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3C8F 
_cell.length_a            58.051 
_cell.length_b            58.051 
_cell.length_c            117.466 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 29 A CYS 29 1_555 B FE4 SF4 . A SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc2 A SG CYS 33 A CYS 33 1_555 B FE1 SF4 . A SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc3 A SG CYS 36 A CYS 36 1_555 B FE3 SF4 . A SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
#
_chem_comp.formula           'C7 H16 N O2 S 1' 
_chem_comp.formula_weight    178.272 
_chem_comp.id                MT2 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '[(3S)-3-amino-3-carboxypropyl](ethyl)methylsulfonium' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     S-ethyl-L-Methionine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C MT2 doub 237 n n 
C OXT MT2 sing 238 n n 
C CA MT2 sing 239 n n 
CA N MT2 sing 240 n n 
CA CB MT2 sing 241 n n 
CA HA MT2 sing 242 n n 
N H MT2 sing 243 n n 
N H2 MT2 sing 244 n n 
CB CG MT2 sing 245 n n 
CB HB1 MT2 sing 246 n n 
CB HB2 MT2 sing 247 n n 
CG SD MT2 sing 248 n n 
CG HG1 MT2 sing 249 n n 
CG HG2 MT2 sing 250 n n 
SD CE MT2 sing 251 n n 
SD C15 MT2 sing 252 n n 
CE HE1 MT2 sing 253 n n 
CE HE2 MT2 sing 254 n n 
CE HE3 MT2 sing 255 n n 
C14 C15 MT2 sing 256 n n 
C14 H14 MT2 sing 257 n n 
C14 H14A MT2 sing 258 n n 
C14 H14B MT2 sing 259 n n 
C15 H15 MT2 sing 260 n n 
C15 H15A MT2 sing 261 n n 
OXT HXT MT2 sing 262 n n 
#
_atom_sites.entry_id                     3C8F 
_atom_sites.fract_transf_matrix[1][1]    0.017226 
_atom_sites.fract_transf_matrix[1][2]    0.009946 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019891 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 500 500 SF4 FS4 . 
C 3 MT2 A 1 501 501 MT2 MT2 . 
D 4 PGE A 1 502 502 PGE PGE . 
E 5 HOH A 1 600 600 HOH HOH . 
E 5 HOH A 2 601 601 HOH HOH . 
E 5 HOH A 3 602 602 HOH HOH . 
E 5 HOH A 4 603 603 HOH HOH . 
E 5 HOH A 5 604 604 HOH HOH . 
E 5 HOH A 6 605 605 HOH HOH . 
E 5 HOH A 7 606 606 HOH HOH . 
E 5 HOH A 8 607 607 HOH HOH . 
E 5 HOH A 9 608 608 HOH HOH . 
E 5 HOH A 10 609 609 HOH HOH . 
E 5 HOH A 11 610 610 HOH HOH . 
E 5 HOH A 12 611 611 HOH HOH . 
E 5 HOH A 13 612 612 HOH HOH . 
E 5 HOH A 14 613 613 HOH HOH . 
E 5 HOH A 15 614 614 HOH HOH . 
E 5 HOH A 16 615 615 HOH HOH . 
E 5 HOH A 17 616 616 HOH HOH . 
E 5 HOH A 18 617 617 HOH HOH . 
E 5 HOH A 19 618 618 HOH HOH . 
E 5 HOH A 20 619 619 HOH HOH . 
E 5 HOH A 21 620 620 HOH HOH . 
E 5 HOH A 22 621 621 HOH HOH . 
E 5 HOH A 23 622 622 HOH HOH . 
E 5 HOH A 24 623 623 HOH HOH . 
E 5 HOH A 25 624 624 HOH HOH . 
E 5 HOH A 26 625 625 HOH HOH . 
E 5 HOH A 27 626 626 HOH HOH . 
E 5 HOH A 28 627 627 HOH HOH . 
E 5 HOH A 29 628 628 HOH HOH . 
E 5 HOH A 30 629 629 HOH HOH . 
E 5 HOH A 31 630 630 HOH HOH . 
E 5 HOH A 32 631 631 HOH HOH . 
E 5 HOH A 33 632 632 HOH HOH . 
E 5 HOH A 34 633 633 HOH HOH . 
E 5 HOH A 35 634 634 HOH HOH . 
E 5 HOH A 36 635 635 HOH HOH . 
E 5 HOH A 37 636 636 HOH HOH . 
E 5 HOH A 38 637 637 HOH HOH . 
E 5 HOH A 39 638 638 HOH HOH . 
E 5 HOH A 40 639 639 HOH HOH . 
E 5 HOH A 41 640 640 HOH HOH . 
E 5 HOH A 42 641 641 HOH HOH . 
E 5 HOH A 43 642 642 HOH HOH . 
E 5 HOH A 44 643 643 HOH HOH . 
E 5 HOH A 45 644 644 HOH HOH . 
E 5 HOH A 46 645 645 HOH HOH . 
E 5 HOH A 47 646 646 HOH HOH . 
E 5 HOH A 48 647 647 HOH HOH . 
E 5 HOH A 49 648 648 HOH HOH . 
E 5 HOH A 50 649 649 HOH HOH . 
E 5 HOH A 51 650 650 HOH HOH . 
E 5 HOH A 52 651 651 HOH HOH . 
E 5 HOH A 53 652 652 HOH HOH . 
E 5 HOH A 54 653 653 HOH HOH . 
E 5 HOH A 55 654 654 HOH HOH . 
E 5 HOH A 56 655 655 HOH HOH . 
E 5 HOH A 57 656 656 HOH HOH . 
E 5 HOH A 58 657 657 HOH HOH . 
E 5 HOH A 59 658 658 HOH HOH . 
E 5 HOH A 60 659 659 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O MT2 . . . C 3 22.499 8.562 18.996 1 52.88 ? O MT2 501 A 1 
HETATM 2 C C MT2 . . . C 3 22.347 7.981 17.907 1 53.38 ? C MT2 501 A 1 
HETATM 3 O OXT MT2 . . . C 3 22.989 8.203 16.853 1 54.36 ? OXT MT2 501 A 1 
HETATM 4 C CA MT2 . . . C 3 21.266 6.901 17.86 1 54.93 ? CA MT2 501 A 1 
HETATM 5 N N MT2 . . . C 3 20.663 6.863 16.525 1 52.58 ? N MT2 501 A 1 
HETATM 6 C CB MT2 . . . C 3 21.85 5.525 18.204 1 59.72 ? CB MT2 501 A 1 
HETATM 7 C CG MT2 . . . C 3 22.879 5.082 17.146 1 65.56 ? CG MT2 501 A 1 
HETATM 8 S SD MT2 . . . C 3 23.436 3.389 17.529 1 71.84 ? SD MT2 501 A 1 
HETATM 9 C CE MT2 . . . C 3 24.862 2.967 16.474 1 70.8 ? CE MT2 501 A 1 
HETATM 10 C C14 MT2 . . . C 3 20.871 2.419 18.156 1 70.9 ? C14 MT2 501 A 1 
HETATM 11 C C15 MT2 . . . C 3 22.077 2.207 17.229 1 70.09 ? C15 MT2 501 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#