data_3C9L # _model_server_result.job_id N4F7FhIlphIPhboTDS5QHw _model_server_result.datetime_utc '2024-11-08 04:04:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1333}' # _entry.id 3C9L # _exptl.entry_id 3C9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3C9L _cell.length_a 103.82 _cell.length_b 103.82 _cell.length_c 76.59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1335 NAG 2 n B NAG 2 B 2 NAG A 1336 NAG 2 n B BMA 3 B 3 BMA A 1337 BMA 2 n C NAG 1 C 1 NAG A 1338 NAG 2 n C NAG 2 C 2 NAG A 1339 NAG 2 n C BMA 3 C 3 BMA A 1340 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 E C ACE . A ACE 0 1_555 A N MET 1 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A ND2 ASN 2 A ASN 2 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 15 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A NZ LYS 296 A LYS 296 1_555 F C15 RET . A RET 1332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A SG CYS 322 A CYS 322 1_555 G C1 PLM . A PLM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? covale ? covale6 A SG CYS 323 A CYS 323 1_555 H C1 PLM . A PLM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 540 n n C1 O2 PLM doub 541 n n C1 C2 PLM sing 542 n n O1 H PLM sing 543 n n C2 C3 PLM sing 544 n n C2 H21 PLM sing 545 n n C2 H22 PLM sing 546 n n C3 C4 PLM sing 547 n n C3 H31 PLM sing 548 n n C3 H32 PLM sing 549 n n C4 C5 PLM sing 550 n n C4 H41 PLM sing 551 n n C4 H42 PLM sing 552 n n C5 C6 PLM sing 553 n n C5 H51 PLM sing 554 n n C5 H52 PLM sing 555 n n C6 C7 PLM sing 556 n n C6 H61 PLM sing 557 n n C6 H62 PLM sing 558 n n C7 C8 PLM sing 559 n n C7 H71 PLM sing 560 n n C7 H72 PLM sing 561 n n C8 C9 PLM sing 562 n n C8 H81 PLM sing 563 n n C8 H82 PLM sing 564 n n C9 CA PLM sing 565 n n C9 H91 PLM sing 566 n n C9 H92 PLM sing 567 n n CA CB PLM sing 568 n n CA HA1 PLM sing 569 n n CA HA2 PLM sing 570 n n CB CC PLM sing 571 n n CB HB1 PLM sing 572 n n CB HB2 PLM sing 573 n n CC CD PLM sing 574 n n CC HC1 PLM sing 575 n n CC HC2 PLM sing 576 n n CD CE PLM sing 577 n n CD HD1 PLM sing 578 n n CD HD2 PLM sing 579 n n CE CF PLM sing 580 n n CE HE1 PLM sing 581 n n CE HE2 PLM sing 582 n n CF CG PLM sing 583 n n CF HF1 PLM sing 584 n n CF HF2 PLM sing 585 n n CG HG1 PLM sing 586 n n CG HG2 PLM sing 587 n n CG HG3 PLM sing 588 n n # _atom_sites.entry_id 3C9L _atom_sites.fract_transf_matrix[1][1] 0.009632 _atom_sites.fract_transf_matrix[1][2] 0.005561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1349 1349 ZN ZN . E 4 ACE A 1 0 0 ACE ACE . F 5 RET A 1 1332 1332 RET RET . G 6 PLM A 1 1333 1333 PLM PLM . H 6 PLM A 1 1334 1334 PLM PLM . I 7 PEF A 1 1341 1341 PEF PEF . J 8 LDA A 1 1342 1342 LDA LDA . K 9 C8E A 1 1343 1343 C8E C8E . L 9 C8E A 1 1344 1344 C8E C8E . M 9 C8E A 1 1345 1345 C8E C8E . N 9 C8E A 1 1346 1346 C8E C8E . O 9 C8E A 1 1347 1347 C8E C8E . P 9 C8E A 1 1348 1348 C8E C8E . Q 10 HOH A 1 1350 14 HOH HOH . Q 10 HOH A 2 1351 15 HOH HOH . Q 10 HOH A 3 1352 1 HOH HOH . Q 10 HOH A 4 1353 2 HOH HOH . Q 10 HOH A 5 1354 3 HOH HOH . Q 10 HOH A 6 1355 4 HOH HOH . Q 10 HOH A 7 1356 5 HOH HOH . Q 10 HOH A 8 1357 6 HOH HOH . Q 10 HOH A 9 1358 7 HOH HOH . Q 10 HOH A 10 1359 8 HOH HOH . Q 10 HOH A 11 1360 9 HOH HOH . Q 10 HOH A 12 1361 10 HOH HOH . Q 10 HOH A 13 1362 11 HOH HOH . Q 10 HOH A 14 1363 14 HOH HOH . Q 10 HOH A 15 1364 15 HOH HOH . Q 10 HOH A 16 1365 16 HOH HOH . Q 10 HOH A 17 1366 17 HOH HOH . Q 10 HOH A 18 1367 18 HOH HOH . Q 10 HOH A 19 1368 19 HOH HOH . Q 10 HOH A 20 1369 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . G 6 18.173 42.357 7.705 1 86.37 ? C1 PLM 1333 A 1 HETATM 2 O O1 PLM . . . G 6 19.38 42.689 7.625 1 89.65 ? O1 PLM 1333 A 1 HETATM 3 C C2 PLM . . . G 6 17.338 42.814 8.88 1 87.14 ? C2 PLM 1333 A 1 HETATM 4 C C3 PLM . . . G 6 17.739 44.223 9.325 1 83.55 ? C3 PLM 1333 A 1 HETATM 5 C C4 PLM . . . G 6 17.667 45.235 8.185 1 82.89 ? C4 PLM 1333 A 1 HETATM 6 C C5 PLM . . . G 6 17.01 46.534 8.637 1 79.4 ? C5 PLM 1333 A 1 HETATM 7 C C6 PLM . . . G 6 15.488 46.413 8.578 1 73.39 ? C6 PLM 1333 A 1 HETATM 8 C C7 PLM . . . G 6 14.811 47.733 8.942 1 69.06 ? C7 PLM 1333 A 1 HETATM 9 C C8 PLM . . . G 6 13.456 47.854 8.244 1 65.31 ? C8 PLM 1333 A 1 HETATM 10 C C9 PLM . . . G 6 13.05 49.316 8.106 1 62.58 ? C9 PLM 1333 A 1 HETATM 11 C CA PLM . . . G 6 12.091 49.516 6.939 1 66.47 ? CA PLM 1333 A 1 HETATM 12 C CB PLM . . . G 6 10.74 48.858 7.195 1 64.71 ? CB PLM 1333 A 1 HETATM 13 C CC PLM . . . G 6 9.616 49.648 6.531 1 70.22 ? CC PLM 1333 A 1 HETATM 14 C CD PLM . . . G 6 8.235 49.07 6.844 1 63.41 ? CD PLM 1333 A 1 HETATM 15 C CE PLM . . . G 6 7.985 48.994 8.35 1 64.56 ? CE PLM 1333 A 1 HETATM 16 C CF PLM . . . G 6 6.522 49.192 8.744 1 62.68 ? CF PLM 1333 A 1 HETATM 17 C CG PLM . . . G 6 6.181 50.675 8.844 1 58.39 ? CG PLM 1333 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 17 #