data_3C9L # _model_server_result.job_id sC1rtDbVBmGpk6AKBPQ6iA _model_server_result.datetime_utc '2024-11-08 04:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1342}' # _entry.id 3C9L # _exptl.entry_id 3C9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3C9L _cell.length_a 103.82 _cell.length_b 103.82 _cell.length_c 76.59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1335 NAG 2 n B NAG 2 B 2 NAG A 1336 NAG 2 n B BMA 3 B 3 BMA A 1337 BMA 2 n C NAG 1 C 1 NAG A 1338 NAG 2 n C NAG 2 C 2 NAG A 1339 NAG 2 n C BMA 3 C 3 BMA A 1340 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 E C ACE . A ACE 0 1_555 A N MET 1 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A ND2 ASN 2 A ASN 2 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 15 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A NZ LYS 296 A LYS 296 1_555 F C15 RET . A RET 1332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A SG CYS 322 A CYS 322 1_555 G C1 PLM . A PLM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? covale ? covale6 A SG CYS 323 A CYS 323 1_555 H C1 PLM . A PLM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 257 n n N1 CM1 LDA sing 258 n n N1 CM2 LDA sing 259 n n N1 C1 LDA sing 260 n n CM1 HM11 LDA sing 261 n n CM1 HM12 LDA sing 262 n n CM1 HM13 LDA sing 263 n n CM2 HM21 LDA sing 264 n n CM2 HM22 LDA sing 265 n n CM2 HM23 LDA sing 266 n n C1 C2 LDA sing 267 n n C1 H11 LDA sing 268 n n C1 H12 LDA sing 269 n n C2 C3 LDA sing 270 n n C2 H21 LDA sing 271 n n C2 H22 LDA sing 272 n n C3 C4 LDA sing 273 n n C3 H31 LDA sing 274 n n C3 H32 LDA sing 275 n n C4 C5 LDA sing 276 n n C4 H41 LDA sing 277 n n C4 H42 LDA sing 278 n n C5 C6 LDA sing 279 n n C5 H51 LDA sing 280 n n C5 H52 LDA sing 281 n n C6 C7 LDA sing 282 n n C6 H61 LDA sing 283 n n C6 H62 LDA sing 284 n n C7 C8 LDA sing 285 n n C7 H71 LDA sing 286 n n C7 H72 LDA sing 287 n n C8 C9 LDA sing 288 n n C8 H81 LDA sing 289 n n C8 H82 LDA sing 290 n n C9 C10 LDA sing 291 n n C9 H91 LDA sing 292 n n C9 H92 LDA sing 293 n n C10 C11 LDA sing 294 n n C10 H101 LDA sing 295 n n C10 H102 LDA sing 296 n n C11 C12 LDA sing 297 n n C11 H111 LDA sing 298 n n C11 H112 LDA sing 299 n n C12 H121 LDA sing 300 n n C12 H122 LDA sing 301 n n C12 H123 LDA sing 302 n n # _atom_sites.entry_id 3C9L _atom_sites.fract_transf_matrix[1][1] 0.009632 _atom_sites.fract_transf_matrix[1][2] 0.005561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1349 1349 ZN ZN . E 4 ACE A 1 0 0 ACE ACE . F 5 RET A 1 1332 1332 RET RET . G 6 PLM A 1 1333 1333 PLM PLM . H 6 PLM A 1 1334 1334 PLM PLM . I 7 PEF A 1 1341 1341 PEF PEF . J 8 LDA A 1 1342 1342 LDA LDA . K 9 C8E A 1 1343 1343 C8E C8E . L 9 C8E A 1 1344 1344 C8E C8E . M 9 C8E A 1 1345 1345 C8E C8E . N 9 C8E A 1 1346 1346 C8E C8E . O 9 C8E A 1 1347 1347 C8E C8E . P 9 C8E A 1 1348 1348 C8E C8E . Q 10 HOH A 1 1350 14 HOH HOH . Q 10 HOH A 2 1351 15 HOH HOH . Q 10 HOH A 3 1352 1 HOH HOH . Q 10 HOH A 4 1353 2 HOH HOH . Q 10 HOH A 5 1354 3 HOH HOH . Q 10 HOH A 6 1355 4 HOH HOH . Q 10 HOH A 7 1356 5 HOH HOH . Q 10 HOH A 8 1357 6 HOH HOH . Q 10 HOH A 9 1358 7 HOH HOH . Q 10 HOH A 10 1359 8 HOH HOH . Q 10 HOH A 11 1360 9 HOH HOH . Q 10 HOH A 12 1361 10 HOH HOH . Q 10 HOH A 13 1362 11 HOH HOH . Q 10 HOH A 14 1363 14 HOH HOH . Q 10 HOH A 15 1364 15 HOH HOH . Q 10 HOH A 16 1365 16 HOH HOH . Q 10 HOH A 17 1366 17 HOH HOH . Q 10 HOH A 18 1367 18 HOH HOH . Q 10 HOH A 19 1368 19 HOH HOH . Q 10 HOH A 20 1369 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . J 8 -26.363 52.597 9.996 1 79.71 ? N1 LDA 1342 A 1 HETATM 2 O O1 LDA . . . J 8 -25.756 53.396 9.253 1 71.56 ? O1 LDA 1342 A 1 HETATM 3 C CM1 LDA . . . J 8 -25.993 52.829 11.407 1 78.45 ? CM1 LDA 1342 A 1 HETATM 4 C CM2 LDA . . . J 8 -27.821 52.841 9.925 1 76.9 ? CM2 LDA 1342 A 1 HETATM 5 C C1 LDA . . . J 8 -26.126 51.209 9.579 1 75.83 ? C1 LDA 1342 A 1 HETATM 6 C C2 LDA . . . J 8 -25.023 51.169 8.508 1 61.2 ? C2 LDA 1342 A 1 HETATM 7 C C3 LDA . . . J 8 -23.872 50.203 8.833 1 69.56 ? C3 LDA 1342 A 1 HETATM 8 C C4 LDA . . . J 8 -23.233 49.489 7.63 1 66.02 ? C4 LDA 1342 A 1 HETATM 9 C C5 LDA . . . J 8 -24.224 48.689 6.786 1 62.78 ? C5 LDA 1342 A 1 HETATM 10 C C6 LDA . . . J 8 -23.792 48.467 5.337 1 58.19 ? C6 LDA 1342 A 1 HETATM 11 C C7 LDA . . . J 8 -24.817 49.1 4.395 1 57.65 ? C7 LDA 1342 A 1 HETATM 12 C C8 LDA . . . J 8 -24.43 49.046 2.916 1 58.76 ? C8 LDA 1342 A 1 HETATM 13 C C9 LDA . . . J 8 -25.393 49.855 2.034 1 55.14 ? C9 LDA 1342 A 1 HETATM 14 C C10 LDA . . . J 8 -25.238 49.599 0.531 1 57.51 ? C10 LDA 1342 A 1 HETATM 15 C C11 LDA . . . J 8 -26.478 50.073 -0.229 1 61.12 ? C11 LDA 1342 A 1 HETATM 16 C C12 LDA . . . J 8 -26.305 50.135 -1.75 1 54.34 ? C12 LDA 1342 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #