data_3C9L
#
_model_server_result.job_id            6C8bLZSlVM4tyiNtYYwyPg 
_model_server_result.datetime_utc      '2024-11-23 09:05:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1344}' 
#
_entry.id    3C9L 
#
_exptl.entry_id    3C9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.438 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3C9L 
_cell.length_a            103.82 
_cell.length_b            103.82 
_cell.length_c            76.59 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 K N N 
? 9 L N N 
? 9 M N N 
? 9 N N N 
? 9 O N N 
? 9 P N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 1335 NAG 
2 n B NAG 2 B 2 NAG A 1336 NAG 
2 n B BMA 3 B 3 BMA A 1337 BMA 
2 n C NAG 1 C 1 NAG A 1338 NAG 
2 n C NAG 2 C 2 NAG A 1339 NAG 
2 n C BMA 3 C 3 BMA A 1340 BMA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 E C ACE . A ACE 0 1_555 A N MET 1 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A ND2 ASN 2 A ASN 2 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 A ND2 ASN 15 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 A NZ LYS 296 A LYS 296 1_555 F C15 RET . A RET 1332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale5 A SG CYS 322 A CYS 322 1_555 G C1 PLM . A PLM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? 
covale ? covale6 A SG CYS 323 A CYS 323 1_555 H C1 PLM . A PLM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? 
covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale8 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale10 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C16 H34 O5' 
_chem_comp.formula_weight    306.438 
_chem_comp.id                C8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 C8E sing 100 n n 
C1 H11 C8E sing 101 n n 
C1 H12 C8E sing 102 n n 
C1 H13 C8E sing 103 n n 
C2 C3 C8E sing 104 n n 
C2 H21 C8E sing 105 n n 
C2 H22 C8E sing 106 n n 
C3 C4 C8E sing 107 n n 
C3 H31 C8E sing 108 n n 
C3 H32 C8E sing 109 n n 
C4 C5 C8E sing 110 n n 
C4 H41 C8E sing 111 n n 
C4 H42 C8E sing 112 n n 
C5 C6 C8E sing 113 n n 
C5 H51 C8E sing 114 n n 
C5 H52 C8E sing 115 n n 
C6 C7 C8E sing 116 n n 
C6 H61 C8E sing 117 n n 
C6 H62 C8E sing 118 n n 
C7 C8 C8E sing 119 n n 
C7 H71 C8E sing 120 n n 
C7 H72 C8E sing 121 n n 
C8 O9 C8E sing 122 n n 
C8 H81 C8E sing 123 n n 
C8 H82 C8E sing 124 n n 
O9 C10 C8E sing 125 n n 
C10 C11 C8E sing 126 n n 
C10 H101 C8E sing 127 n n 
C10 H102 C8E sing 128 n n 
C11 O12 C8E sing 129 n n 
C11 H111 C8E sing 130 n n 
C11 H112 C8E sing 131 n n 
O12 C13 C8E sing 132 n n 
C13 C14 C8E sing 133 n n 
C13 H131 C8E sing 134 n n 
C13 H132 C8E sing 135 n n 
C14 O15 C8E sing 136 n n 
C14 H141 C8E sing 137 n n 
C14 H142 C8E sing 138 n n 
O15 C16 C8E sing 139 n n 
C16 C17 C8E sing 140 n n 
C16 H161 C8E sing 141 n n 
C16 H162 C8E sing 142 n n 
C17 O18 C8E sing 143 n n 
C17 H171 C8E sing 144 n n 
C17 H172 C8E sing 145 n n 
O18 C19 C8E sing 146 n n 
C19 C20 C8E sing 147 n n 
C19 H191 C8E sing 148 n n 
C19 H192 C8E sing 149 n n 
C20 O21 C8E sing 150 n n 
C20 H201 C8E sing 151 n n 
C20 H202 C8E sing 152 n n 
O21 HO2 C8E sing 153 n n 
#
_atom_sites.entry_id                     3C9L 
_atom_sites.fract_transf_matrix[1][1]    0.009632 
_atom_sites.fract_transf_matrix[1][2]    0.005561 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013057 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 ZN A 1 1349 1349 ZN ZN . 
E 4 ACE A 1 0 0 ACE ACE . 
F 5 RET A 1 1332 1332 RET RET . 
G 6 PLM A 1 1333 1333 PLM PLM . 
H 6 PLM A 1 1334 1334 PLM PLM . 
I 7 PEF A 1 1341 1341 PEF PEF . 
J 8 LDA A 1 1342 1342 LDA LDA . 
K 9 C8E A 1 1343 1343 C8E C8E . 
L 9 C8E A 1 1344 1344 C8E C8E . 
M 9 C8E A 1 1345 1345 C8E C8E . 
N 9 C8E A 1 1346 1346 C8E C8E . 
O 9 C8E A 1 1347 1347 C8E C8E . 
P 9 C8E A 1 1348 1348 C8E C8E . 
Q 10 HOH A 1 1350 14 HOH HOH . 
Q 10 HOH A 2 1351 15 HOH HOH . 
Q 10 HOH A 3 1352 1 HOH HOH . 
Q 10 HOH A 4 1353 2 HOH HOH . 
Q 10 HOH A 5 1354 3 HOH HOH . 
Q 10 HOH A 6 1355 4 HOH HOH . 
Q 10 HOH A 7 1356 5 HOH HOH . 
Q 10 HOH A 8 1357 6 HOH HOH . 
Q 10 HOH A 9 1358 7 HOH HOH . 
Q 10 HOH A 10 1359 8 HOH HOH . 
Q 10 HOH A 11 1360 9 HOH HOH . 
Q 10 HOH A 12 1361 10 HOH HOH . 
Q 10 HOH A 13 1362 11 HOH HOH . 
Q 10 HOH A 14 1363 14 HOH HOH . 
Q 10 HOH A 15 1364 15 HOH HOH . 
Q 10 HOH A 16 1365 16 HOH HOH . 
Q 10 HOH A 17 1366 17 HOH HOH . 
Q 10 HOH A 18 1367 18 HOH HOH . 
Q 10 HOH A 19 1368 19 HOH HOH . 
Q 10 HOH A 20 1369 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 C8E . . . L 9 -5.446 65.493 -9.361 1 61.92 ? C1 C8E 1344 A 1 
HETATM 2 C C2 C8E . . . L 9 -6.717 66.022 -8.703 1 67.9 ? C2 C8E 1344 A 1 
HETATM 3 C C3 C8E . . . L 9 -6.408 67.158 -7.733 1 65.67 ? C3 C8E 1344 A 1 
HETATM 4 C C4 C8E . . . L 9 -7.69 67.764 -7.167 1 63.59 ? C4 C8E 1344 A 1 
HETATM 5 C C5 C8E . . . L 9 -7.468 69.226 -6.785 1 54.17 ? C5 C8E 1344 A 1 
HETATM 6 C C6 C8E . . . L 9 -8.784 69.98 -6.825 1 60.86 ? C6 C8E 1344 A 1 
HETATM 7 C C7 C8E . . . L 9 -8.578 71.433 -6.43 1 67.21 ? C7 C8E 1344 A 1 
HETATM 8 C C8 C8E . . . L 9 -9.544 72.331 -7.208 1 73.51 ? C8 C8E 1344 A 1 
HETATM 9 O O9 C8E . . . L 9 -10.47 72.909 -6.314 1 77.04 ? O9 C8E 1344 A 1 
HETATM 10 C C10 C8E . . . L 9 -10.535 74.31 -6.421 1 74.35 ? C10 C8E 1344 A 1 
HETATM 11 C C11 C8E . . . L 9 -12.007 74.724 -6.473 1 77.53 ? C11 C8E 1344 A 1 
HETATM 12 O O12 C8E . . . L 9 -12.805 73.623 -6.835 1 86.62 ? O12 C8E 1344 A 1 
HETATM 13 C C13 C8E . . . L 9 -13.944 73.548 -6.006 1 83.39 ? C13 C8E 1344 A 1 
HETATM 14 C C14 C8E . . . L 9 -15.088 72.879 -6.792 1 82.4 ? C14 C8E 1344 A 1 
HETATM 15 O O15 C8E . . . L 9 -15.361 71.589 -6.29 1 78.19 ? O15 C8E 1344 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#