data_3C9T
#
_model_server_result.job_id            AnOihtWHPSRHRYNrqlmibg 
_model_server_result.datetime_utc      '2024-11-23 19:23:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3c9t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":308}' 
#
_entry.id    3C9T 
#
_exptl.entry_id    3C9T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.334 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'THIAMIN PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3C9T 
_cell.length_a            60.75 
_cell.length_b            66.843 
_cell.length_c            196.86 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3C9T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 70 A CYS 34 1_555 B SG CYS 70 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OD2 ASP 79 A ASP 43 1_555 D MG MG . A MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc2 A OD2 ASP 107 A ASP 71 1_555 D MG MG . A MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc3 A OD1 ASP 107 A ASP 71 1_555 F MG MG . A MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 A OD1 ASN 155 A ASN 119 1_555 G MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc5 A OD2 ASP 243 A ASP 207 1_555 F MG MG . A MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc6 A OD1 ASP 246 A ASP 210 1_555 C MG MG . A MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 A OD2 ASP 246 A ASP 210 1_555 E MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc8 I O3G ACP . A ACP 307 1_555 G MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc9 I O3G ACP . A ACP 307 1_555 M MG MG . B MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc10 H O2 TPS . A TPS 308 1_555 J MG MG . B MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc11 G MG MG . A MG 314 1_555 B OD1 ASP 79 B ASP 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc12 G MG MG . A MG 314 1_555 P O2 TPS . B TPS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc13 B OD2 ASP 79 B ASP 43 1_555 M MG MG . B MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc14 B OD2 ASP 107 B ASP 71 1_555 M MG MG . B MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc15 B ND2 ASN 155 B ASN 119 1_555 J MG MG . B MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc16 B OD1 ASP 243 B ASP 207 1_555 L MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc17 B OD2 ASP 246 B ASP 210 1_555 K MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc18 O O1G ACP . B ACP 307 1_555 J MG MG . B MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
#
_chem_comp.formula           'C12 H18 N4 O4 P S 1' 
_chem_comp.formula_weight    345.334 
_chem_comp.id                TPS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'THIAMIN PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM2 C2A TPS sing 357 n n 
CM2 HM21 TPS sing 358 n n 
CM2 HM22 TPS sing 359 n n 
CM2 HM23 TPS sing 360 n n 
N3 C2 TPS doub 361 n y 
N3 C4 TPS sing 362 n y 
N3 C7A TPS sing 363 n n 
C2 S1 TPS sing 364 n y 
C2 H2 TPS sing 365 n n 
S1 C5 TPS sing 366 n y 
C5 C4 TPS doub 367 n y 
C5 C6 TPS sing 368 n n 
C4 CM4 TPS sing 369 n n 
CM4 HM41 TPS sing 370 n n 
CM4 HM42 TPS sing 371 n n 
CM4 HM43 TPS sing 372 n n 
C6 C7 TPS sing 373 n n 
C6 H61 TPS sing 374 n n 
C6 H62 TPS sing 375 n n 
C7 O7 TPS sing 376 n n 
C7 H71 TPS sing 377 n n 
C7 H72 TPS sing 378 n n 
O7 P1 TPS sing 379 n n 
N1A C2A TPS doub 380 n y 
N1A C6A TPS sing 381 n y 
C2A N3A TPS sing 382 n y 
N3A C4A TPS doub 383 n y 
C4A N4A TPS sing 384 n n 
C4A C5A TPS sing 385 n y 
N4A H41N TPS sing 386 n n 
N4A H42N TPS sing 387 n n 
C5A C6A TPS doub 388 n y 
C5A C7A TPS sing 389 n n 
C6A H6A TPS sing 390 n n 
C7A H7A1 TPS sing 391 n n 
C7A H7A2 TPS sing 392 n n 
P1 O1 TPS doub 393 n n 
P1 O2 TPS sing 394 n n 
P1 O3 TPS sing 395 n n 
O2 HO2 TPS sing 396 n n 
O3 HO3 TPS sing 397 n n 
#
_atom_sites.entry_id                     3C9T 
_atom_sites.fract_transf_matrix[1][1]    0.016461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01496 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 309 309 MG MG . 
D 2 MG A 1 310 310 MG MG . 
E 2 MG A 1 312 312 MG MG . 
F 2 MG A 1 313 313 MG MG . 
G 2 MG A 1 314 309 MG MG . 
H 3 TPS A 1 308 308 TPS TPS . 
I 4 ACP A 1 307 307 ACP ACP . 
J 2 MG B 1 311 311 MG MG . 
K 2 MG B 1 310 310 MG MG . 
L 2 MG B 1 312 311 MG MG . 
M 2 MG B 1 313 312 MG MG . 
N 2 MG B 1 314 313 MG MG . 
O 4 ACP B 1 307 307 ACP ACP . 
P 3 TPS B 1 308 308 TPS TPS . 
Q 5 HOH A 1 315 2 HOH HOH . 
Q 5 HOH A 2 316 3 HOH HOH . 
Q 5 HOH A 3 317 6 HOH HOH . 
Q 5 HOH A 4 318 7 HOH HOH . 
Q 5 HOH A 5 319 8 HOH HOH . 
Q 5 HOH A 6 320 10 HOH HOH . 
Q 5 HOH A 7 321 12 HOH HOH . 
Q 5 HOH A 8 322 13 HOH HOH . 
R 5 HOH B 1 315 1 HOH HOH . 
R 5 HOH B 2 316 5 HOH HOH . 
R 5 HOH B 3 317 9 HOH HOH . 
R 5 HOH B 4 318 11 HOH HOH . 
R 5 HOH B 5 319 14 HOH HOH . 
R 5 HOH B 6 320 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM2 TPS . . . H 3 26.482 41.633 114.692 1 53.86 ? CM2 TPS 308 A 1 
HETATM 2 N N3 TPS . . . H 3 20.184 42.405 116.188 1 51.23 ? N3 TPS 308 A 1 
HETATM 3 C C2 TPS . . . H 3 20.986 43.131 116.987 1 51.76 ? C2 TPS 308 A 1 
HETATM 4 S S1 TPS . . . H 3 20.274 44.261 117.93 1 47.11 ? S1 TPS 308 A 1 
HETATM 5 C C5 TPS . . . H 3 18.723 43.831 117.295 1 51.07 ? C5 TPS 308 A 1 
HETATM 6 C C4 TPS . . . H 3 18.855 42.811 116.367 1 51.89 ? C4 TPS 308 A 1 
HETATM 7 C CM4 TPS . . . H 3 17.737 42.157 115.59 1 50.01 ? CM4 TPS 308 A 1 
HETATM 8 C C6 TPS . . . H 3 17.556 44.578 117.806 1 52.08 ? C6 TPS 308 A 1 
HETATM 9 C C7 TPS . . . H 3 18.014 45.982 117.894 1 56.06 ? C7 TPS 308 A 1 
HETATM 10 O O7 TPS . . . H 3 17.186 46.958 118.448 1 56.96 ? O7 TPS 308 A 1 
HETATM 11 N N1A TPS . . . H 3 24.481 40.473 115.411 1 54.69 ? N1A TPS 308 A 1 
HETATM 12 C C2A TPS . . . H 3 25.019 41.586 114.777 1 53.94 ? C2A TPS 308 A 1 
HETATM 13 N N3A TPS . . . H 3 24.305 42.542 114.276 1 53.76 ? N3A TPS 308 A 1 
HETATM 14 C C4A TPS . . . H 3 22.927 42.511 114.351 1 51.3 ? C4A TPS 308 A 1 
HETATM 15 N N4A TPS . . . H 3 22.241 43.521 113.82 1 48.88 ? N4A TPS 308 A 1 
HETATM 16 C C5A TPS . . . H 3 22.27 41.374 115.027 1 52.79 ? C5A TPS 308 A 1 
HETATM 17 C C6A TPS . . . H 3 23.118 40.393 115.514 1 51.8 ? C6A TPS 308 A 1 
HETATM 18 C C7A TPS . . . H 3 20.735 41.306 115.241 1 52.48 ? C7A TPS 308 A 1 
HETATM 19 P P1 TPS . . . H 3 17.457 47.438 119.899 1 54.36 ? P1 TPS 308 A 1 
HETATM 20 O O1 TPS . . . H 3 17.371 46.24 120.758 1 54.02 ? O1 TPS 308 A 1 
HETATM 21 O O2 TPS . . . H 3 16.396 48.441 120.123 1 60.58 ? O2 TPS 308 A 1 
HETATM 22 O O3 TPS . . . H 3 18.829 48.009 119.934 1 58.14 ? O3 TPS 308 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#