data_3C9T # _model_server_result.job_id 0iAdkBdQZ-J6TX-lSd2_2g _model_server_result.datetime_utc '2024-11-23 19:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3c9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":312}' # _entry.id 3C9T # _exptl.entry_id 3C9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3C9T _cell.length_a 60.75 _cell.length_b 66.843 _cell.length_c 196.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3C9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 70 A CYS 34 1_555 B SG CYS 70 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD2 ASP 79 A ASP 43 1_555 D MG MG . A MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc2 A OD2 ASP 107 A ASP 71 1_555 D MG MG . A MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A OD1 ASP 107 A ASP 71 1_555 F MG MG . A MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 A OD1 ASN 155 A ASN 119 1_555 G MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc5 A OD2 ASP 243 A ASP 207 1_555 F MG MG . A MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 A OD1 ASP 246 A ASP 210 1_555 C MG MG . A MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 A OD2 ASP 246 A ASP 210 1_555 E MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 I O3G ACP . A ACP 307 1_555 G MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc9 I O3G ACP . A ACP 307 1_555 M MG MG . B MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc10 H O2 TPS . A TPS 308 1_555 J MG MG . B MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc11 G MG MG . A MG 314 1_555 B OD1 ASP 79 B ASP 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc12 G MG MG . A MG 314 1_555 P O2 TPS . B TPS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc13 B OD2 ASP 79 B ASP 43 1_555 M MG MG . B MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc14 B OD2 ASP 107 B ASP 71 1_555 M MG MG . B MG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc15 B ND2 ASN 155 B ASN 119 1_555 J MG MG . B MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc16 B OD1 ASP 243 B ASP 207 1_555 L MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc17 B OD2 ASP 246 B ASP 210 1_555 K MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc18 O O1G ACP . B ACP 307 1_555 J MG MG . B MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3C9T _atom_sites.fract_transf_matrix[1][1] 0.016461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 309 309 MG MG . D 2 MG A 1 310 310 MG MG . E 2 MG A 1 312 312 MG MG . F 2 MG A 1 313 313 MG MG . G 2 MG A 1 314 309 MG MG . H 3 TPS A 1 308 308 TPS TPS . I 4 ACP A 1 307 307 ACP ACP . J 2 MG B 1 311 311 MG MG . K 2 MG B 1 310 310 MG MG . L 2 MG B 1 312 311 MG MG . M 2 MG B 1 313 312 MG MG . N 2 MG B 1 314 313 MG MG . O 4 ACP B 1 307 307 ACP ACP . P 3 TPS B 1 308 308 TPS TPS . Q 5 HOH A 1 315 2 HOH HOH . Q 5 HOH A 2 316 3 HOH HOH . Q 5 HOH A 3 317 6 HOH HOH . Q 5 HOH A 4 318 7 HOH HOH . Q 5 HOH A 5 319 8 HOH HOH . Q 5 HOH A 6 320 10 HOH HOH . Q 5 HOH A 7 321 12 HOH HOH . Q 5 HOH A 8 322 13 HOH HOH . R 5 HOH B 1 315 1 HOH HOH . R 5 HOH B 2 316 5 HOH HOH . R 5 HOH B 3 317 9 HOH HOH . R 5 HOH B 4 318 11 HOH HOH . R 5 HOH B 5 319 14 HOH HOH . R 5 HOH B 6 320 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.147 _atom_site.Cartn_y 72.951 _atom_site.Cartn_z 126.948 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 312 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #