data_3CAB # _model_server_result.job_id I1xvYg-59YGS1_1SMYrVDQ _model_server_result.datetime_utc '2024-12-22 11:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":122}' # _entry.id 3CAB # _exptl.entry_id 3CAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CAB _cell.length_a 75.478 _cell.length_b 86.185 _cell.length_c 49.557 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 89 A CYS 89 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3CAB _atom_sites.fract_transf_matrix[1][1] 0.013249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 120 1 GOL GOL . C 2 GOL A 1 121 2 GOL GOL . D 2 GOL A 1 122 3 GOL GOL . E 3 HOH A 1 123 3 HOH HOH . E 3 HOH A 2 124 4 HOH HOH . E 3 HOH A 3 125 5 HOH HOH . E 3 HOH A 4 126 6 HOH HOH . E 3 HOH A 5 127 7 HOH HOH . E 3 HOH A 6 128 8 HOH HOH . E 3 HOH A 7 129 9 HOH HOH . E 3 HOH A 8 130 10 HOH HOH . E 3 HOH A 9 131 11 HOH HOH . E 3 HOH A 10 132 12 HOH HOH . E 3 HOH A 11 133 13 HOH HOH . E 3 HOH A 12 134 14 HOH HOH . E 3 HOH A 13 135 15 HOH HOH . E 3 HOH A 14 136 16 HOH HOH . E 3 HOH A 15 137 17 HOH HOH . E 3 HOH A 16 138 18 HOH HOH . E 3 HOH A 17 139 19 HOH HOH . E 3 HOH A 18 140 20 HOH HOH . E 3 HOH A 19 141 21 HOH HOH . E 3 HOH A 20 142 22 HOH HOH . E 3 HOH A 21 143 23 HOH HOH . E 3 HOH A 22 144 24 HOH HOH . E 3 HOH A 23 145 25 HOH HOH . E 3 HOH A 24 146 26 HOH HOH . E 3 HOH A 25 147 28 HOH HOH . E 3 HOH A 26 148 29 HOH HOH . E 3 HOH A 27 149 30 HOH HOH . E 3 HOH A 28 150 31 HOH HOH . E 3 HOH A 29 151 32 HOH HOH . E 3 HOH A 30 152 33 HOH HOH . E 3 HOH A 31 153 34 HOH HOH . E 3 HOH A 32 154 35 HOH HOH . E 3 HOH A 33 155 36 HOH HOH . E 3 HOH A 34 156 37 HOH HOH . E 3 HOH A 35 157 38 HOH HOH . E 3 HOH A 36 158 39 HOH HOH . E 3 HOH A 37 159 40 HOH HOH . E 3 HOH A 38 160 43 HOH HOH . E 3 HOH A 39 161 44 HOH HOH . E 3 HOH A 40 162 45 HOH HOH . E 3 HOH A 41 163 47 HOH HOH . E 3 HOH A 42 164 49 HOH HOH . E 3 HOH A 43 165 50 HOH HOH . E 3 HOH A 44 166 52 HOH HOH . E 3 HOH A 45 167 54 HOH HOH . E 3 HOH A 46 168 55 HOH HOH . E 3 HOH A 47 169 56 HOH HOH . E 3 HOH A 48 170 57 HOH HOH . E 3 HOH A 49 171 59 HOH HOH . E 3 HOH A 50 172 60 HOH HOH . E 3 HOH A 51 173 61 HOH HOH . E 3 HOH A 52 174 62 HOH HOH . E 3 HOH A 53 175 65 HOH HOH . E 3 HOH A 54 176 66 HOH HOH . E 3 HOH A 55 177 67 HOH HOH . E 3 HOH A 56 178 69 HOH HOH . E 3 HOH A 57 179 72 HOH HOH . E 3 HOH A 58 180 74 HOH HOH . E 3 HOH A 59 181 76 HOH HOH . E 3 HOH A 60 182 78 HOH HOH . E 3 HOH A 61 183 79 HOH HOH . E 3 HOH A 62 184 85 HOH HOH . E 3 HOH A 63 185 86 HOH HOH . E 3 HOH A 64 186 88 HOH HOH . E 3 HOH A 65 187 89 HOH HOH . E 3 HOH A 66 188 91 HOH HOH . E 3 HOH A 67 189 92 HOH HOH . E 3 HOH A 68 190 93 HOH HOH . E 3 HOH A 69 191 94 HOH HOH . E 3 HOH A 70 192 96 HOH HOH . E 3 HOH A 71 193 98 HOH HOH . E 3 HOH A 72 194 99 HOH HOH . E 3 HOH A 73 195 100 HOH HOH . E 3 HOH A 74 196 105 HOH HOH . E 3 HOH A 75 197 106 HOH HOH . E 3 HOH A 76 198 107 HOH HOH . E 3 HOH A 77 199 108 HOH HOH . E 3 HOH A 78 200 109 HOH HOH . E 3 HOH A 79 201 114 HOH HOH . E 3 HOH A 80 202 116 HOH HOH . E 3 HOH A 81 203 117 HOH HOH . E 3 HOH A 82 204 122 HOH HOH . E 3 HOH A 83 205 123 HOH HOH . E 3 HOH A 84 206 124 HOH HOH . E 3 HOH A 85 207 125 HOH HOH . E 3 HOH A 86 208 126 HOH HOH . E 3 HOH A 87 209 128 HOH HOH . E 3 HOH A 88 210 129 HOH HOH . E 3 HOH A 89 211 130 HOH HOH . E 3 HOH A 90 212 131 HOH HOH . E 3 HOH A 91 213 132 HOH HOH . E 3 HOH A 92 214 133 HOH HOH . E 3 HOH A 93 215 134 HOH HOH . E 3 HOH A 94 216 135 HOH HOH . E 3 HOH A 95 217 136 HOH HOH . E 3 HOH A 96 218 137 HOH HOH . E 3 HOH A 97 219 138 HOH HOH . E 3 HOH A 98 220 139 HOH HOH . E 3 HOH A 99 221 142 HOH HOH . E 3 HOH A 100 222 146 HOH HOH . E 3 HOH A 101 223 151 HOH HOH . E 3 HOH A 102 224 157 HOH HOH . E 3 HOH A 103 225 160 HOH HOH . E 3 HOH A 104 226 163 HOH HOH . E 3 HOH A 105 227 167 HOH HOH . E 3 HOH A 106 228 174 HOH HOH . E 3 HOH A 107 229 175 HOH HOH . E 3 HOH A 108 230 176 HOH HOH . E 3 HOH A 109 231 185 HOH HOH . E 3 HOH A 110 232 186 HOH HOH . E 3 HOH A 111 233 187 HOH HOH . E 3 HOH A 112 234 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 26.155 5.46 -1.025 1 75.09 ? C1 GOL 122 A 1 HETATM 2 O O1 GOL . . . D 2 27.261 6.351 -0.895 1 74.96 ? O1 GOL 122 A 1 HETATM 3 C C2 GOL . . . D 2 24.954 5.801 -0.116 1 74.46 ? C2 GOL 122 A 1 HETATM 4 O O2 GOL . . . D 2 24.675 7.185 -0.122 1 72.8 ? O2 GOL 122 A 1 HETATM 5 C C3 GOL . . . D 2 23.703 5.039 -0.578 1 75.03 ? C3 GOL 122 A 1 HETATM 6 O O3 GOL . . . D 2 22.549 5.414 0.158 1 75.73 ? O3 GOL 122 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 1279 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #